genome.fa.s8.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  94  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35339802--35339830	8	3.6	8	100	0	58	24	13	27	34	1.93
35339918--35339962	23	2.0	23	100	0	90	17	22	26	33	1.96
35345770--35345814	24	1.9	23	82	13	56	46	26	6	20	1.75
35346876--35347036	33	4.8	32	73	8	142	29	25	14	30	1.95
35346876--35347102	101	2.2	101	93	0	391	29	25	14	30	1.94
35346876--35347101	33	6.7	33	70	8	116	29	25	14	30	1.95
35353438--35353472	3	11.7	3	100	0	70	31	34	0	34	1.58
35355262--35355305	23	2.0	22	82	13	54	52	2	0	45	1.13
35362618--35362676	29	2.0	29	90	0	91	22	10	32	35	1.87
35362780--35363004	49	4.6	49	100	0	450	31	14	10	44	1.79
35367966--35368024	29	2.0	29	90	0	91	22	10	32	35	1.87
35368804--35368836	17	1.9	17	93	0	57	51	0	6	42	1.26
35379549--35379592	23	1.9	22	82	17	54	36	25	0	38	1.56
35379637--35379725	45	2.0	45	93	0	151	32	22	19	25	1.97
35379736--35379922	51	3.7	50	74	4	178	30	28	16	24	1.97
35386718--35386788	29	2.6	25	80	14	70	45	4	1	49	1.30
35392362--35392395	16	2.1	16	100	0	68	20	5	14	58	1.57
35394061--35394153	7	13.3	7	72	7	55	23	2	35	38	1.67
35394062--35394163	22	4.9	21	76	11	93	24	2	32	40	1.70
35394077--35394151	7	10.6	7	76	12	64	26	1	30	41	1.64
35399726--35399782	21	2.6	22	72	5	53	21	0	31	47	1.51
35400866--35400907	21	2.0	21	86	9	59	21	0	33	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35407954--35408015	31	2.0	31	96	0	115	33	29	4	32	1.78
35415435--35415554	33	3.4	33	72	18	105	35	28	16	20	1.94
35415502--35415585	27	2.8	29	85	10	100	32	29	21	16	1.95
35415460--35415658	102	2.0	102	90	0	317	32	27	18	21	1.97
35423205--35423232	3	9.3	3	100	0	56	32	0	0	67	0.91
35444154--35444210	29	2.0	29	89	0	87	40	0	5	54	1.23
35453758--35453829	29	2.4	29	81	4	81	25	12	15	47	1.80
35455342--35455413	29	2.4	29	81	4	81	25	12	15	47	1.80
35454770--35456362	798	2.0	795	97	0	3026	37	13	7	40	1.73
35456140--35456211	29	2.4	29	81	4	81	25	12	15	47	1.80
35456498--35456524	14	1.9	14	100	0	54	14	0	33	51	1.43
35457365--35457392	7	4.0	7	100	0	56	57	0	0	42	0.99
35457412--35457477	27	2.4	28	87	2	98	42	0	3	54	1.15
35459210--35459257	22	2.2	22	92	0	78	35	12	22	29	1.91
35459452--35459483	17	1.9	16	93	6	55	37	9	0	53	1.34
35461943--35462020	20	4.0	20	75	8	79	38	20	32	8	1.84
35462397--35462469	25	2.9	25	89	6	103	54	0	2	42	1.14
35467464--35467536	25	2.7	27	77	12	71	53	4	2	39	1.34
35467482--35467530	25	2.0	25	88	8	73	55	2	2	40	1.23
35467594--35467651	8	7.1	8	74	21	50	37	0	0	62	0.96
35467594--35467633	17	2.3	18	87	12	57	37	0	0	62	0.95
35467600--35467651	24	2.2	24	85	0	68	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35467643--35467755	55	2.0	56	98	1	219	42	5	15	36	1.70
35468065--35468095	14	2.3	14	94	5	55	70	0	0	29	0.87
35468119--35468170	21	2.5	20	80	20	61	67	3	1	26	1.18
35468118--35468181	15	4.3	15	75	13	53	67	3	1	28	1.15
35468119--35468178	23	2.6	24	82	12	74	66	3	1	28	1.17
35468139--35468189	15	3.4	15	81	5	59	70	1	0	27	0.98
35468126--35468191	23	2.8	24	82	15	77	68	3	1	27	1.13
35470334--35470388	27	2.0	27	100	0	110	52	18	10	18	1.73
35472509--35472566	16	3.3	16	71	28	55	44	12	8	34	1.72
35475665--35475707	22	2.0	22	95	0	77	44	2	6	46	1.43
35476030--35476070	21	1.9	22	85	5	57	26	12	17	43	1.84
35483701--35483771	29	2.4	30	85	4	99	45	11	11	32	1.75
35488237--35488672	87	5.0	87	90	1	581	25	26	20	28	1.99
35506098--35506129	8	4.1	8	92	8	57	12	0	40	46	1.42
35506100--35506129	15	2.0	15	100	0	60	13	0	40	46	1.43
35506105--35506138	15	2.3	15	89	0	50	17	0	38	44	1.49
35506320--35506393	39	2.0	36	89	7	112	62	0	4	33	1.14
35506703--35506746	6	7.2	6	89	5	70	18	0	45	36	1.49
35506941--35506972	12	2.5	13	95	5	57	21	0	40	37	1.54
35506566--35507133	226	2.5	229	87	8	739	35	3	18	42	1.66
35507445--35507489	21	2.1	21	87	0	63	2	26	42	28	1.67
35507747--35507789	18	2.4	18	92	0	68	44	6	27	20	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35509513--35509537	11	2.3	11	100	0	50	68	0	0	32	0.90
35510264--35510313	26	1.9	26	87	0	73	38	20	4	38	1.71
35511949--35511979	16	1.9	16	93	0	53	70	9	9	9	1.33
35520739--35520819	41	1.9	43	87	5	121	38	18	18	24	1.93
35521228--35521363	49	2.8	48	79	8	159	22	20	19	37	1.94
35521330--35521454	48	2.6	48	83	7	173	26	26	14	32	1.94
35521230--35521454	96	2.3	96	82	6	258	24	23	17	34	1.96
35521938--35522069	46	2.8	46	82	4	158	30	20	25	23	1.99
35521938--35522081	47	3.1	47	84	4	175	31	20	25	22	1.98
35521938--35522115	46	3.7	48	80	7	157	29	17	25	26	1.98
35522313--35522370	21	2.7	21	75	5	62	29	8	1	60	1.36
35522556--35522799	48	5.0	48	79	6	251	22	22	20	34	1.97
35522556--35522748	98	2.0	93	81	8	219	22	22	22	33	1.98
35522566--35522777	47	4.4	51	82	5	167	22	22	22	32	1.98
35523719--35524073	99	3.6	99	85	6	436	25	1	16	57	1.45
35527887--35528720	113	7.5	111	86	6	1063	59	14	1	24	1.46
35527682--35528720	215	4.8	221	84	8	1274	58	14	1	25	1.46
35528214--35528720	111	4.5	111	89	3	768	60	14	1	23	1.42
35527672--35528720	437	2.4	428	84	7	1305	58	14	1	25	1.45
35528339--35528724	59	6.9	57	63	23	176	60	14	0	24	1.39
35528727--35528752	13	2.0	13	100	0	52	69	15	0	15	1.20
35529090--35529485	96	4.1	97	85	7	513	40	2	16	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35529335--35529494	44	3.5	44	70	21	121	41	1	20	36	1.63
35529090--35529491	195	2.1	191	87	5	578	40	2	16	40	1.61
35529527--35530060	125	4.3	125	96	0	935	35	17	20	26	1.95
35530642--35530876	97	2.5	95	82	6	289	37	17	2	42	1.62
35532188--35532213	4	6.5	4	100	0	52	76	0	0	23	0.78
35535847--35535874	7	4.0	7	100	0	56	28	42	14	14	1.84
35549375--35549423	21	2.5	20	90	6	73	2	6	10	81	0.94
35549928--35549981	18	3.1	18	89	2	74	57	29	1	11	1.44
35549928--35549981	17	3.1	17	86	2	63	57	29	1	11	1.44
35550433--35550492	27	2.3	26	91	5	95	28	6	21	43	1.78
35555514--35555971	202	2.3	201	89	1	684	32	10	14	42	1.79
35561138--35561198	21	2.9	21	80	0	59	39	39	8	13	1.74
35563783--35563827	7	6.3	7	86	2	54	48	4	0	46	1.22
35568924--35569001	3	25.3	3	76	17	72	61	3	1	33	1.22
35570356--35570545	100	1.9	100	82	6	242	24	20	21	33	1.97
35570826--35571711	128	6.8	130	83	5	953	24	24	20	30	1.99
35571524--35571704	44	4.1	43	67	12	116	22	27	22	27	1.99
35572886--35572920	14	2.6	13	86	8	52	14	14	5	65	1.44
35578584--35578619	16	2.2	16	90	0	54	50	5	11	33	1.61
35580086--35580668	114	5.1	114	86	2	778	25	21	25	27	2.00
35580609--35580698	41	2.2	41	83	0	117	22	17	28	31	1.97
35584714--35585012	151	2.0	152	99	0	591	30	4	16	49	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35587996--35588104	26	4.3	26	76	11	82	40	26	13	19	1.89
35587995--35588064	23	2.9	23	80	12	77	38	30	14	17	1.89
35590805--35591175	139	2.7	138	84	8	444	24	12	10	52	1.71
35590765--35591179	139	3.0	131	78	11	422	24	13	11	51	1.73
35591248--35591286	12	3.2	12	79	13	53	23	0	2	74	0.94
35591497--35591895	141	2.9	139	81	5	439	50	11	11	26	1.73
35594110--35594161	24	2.2	24	89	0	77	55	9	1	32	1.43
35595052--35595201	74	2.0	74	96	0	273	34	6	10	48	1.63
35600569--35600595	7	3.9	7	100	0	54	55	14	0	29	1.40
35600915--35601026	59	1.9	59	82	10	140	24	11	13	50	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135