genome.fa.s8.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  92  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34669685--34669830	45	3.2	45	86	0	193	17	18	22	41	1.91
34669817--34669856	6	6.3	6	88	2	53	17	17	17	47	1.83
34675739--34675788	24	2.1	24	85	7	66	50	6	2	42	1.38
34683161--34683223	4	15.8	4	83	0	81	47	25	4	22	1.70
34687184--34687259	23	3.3	23	94	0	125	28	26	19	25	1.99
34688367--34688404	2	19.0	2	94	0	67	50	0	2	47	1.15
34704236--34704294	1	59.0	1	93	0	82	93	0	1	5	0.41
34704227--34704292	32	2.1	32	91	0	105	86	0	4	9	0.70
34708808--34708898	30	3.0	30	93	0	146	17	28	15	38	1.90
34718372--34718954	291	2.0	292	99	0	1159	39	14	9	36	1.79
34724193--34724227	10	3.4	10	92	7	61	25	2	8	62	1.38
34724194--34724240	21	2.2	21	81	7	51	34	2	6	57	1.36
34724222--34724263	18	2.3	18	80	8	50	40	0	0	59	0.97
34736096--34736142	19	2.6	18	71	18	51	48	17	0	34	1.47
34741199--34741327	63	2.0	63	93	0	222	35	14	13	36	1.85
34741694--34741718	12	2.1	12	100	0	50	32	0	16	52	1.44
34744759--34744853	31	3.1	31	70	10	86	45	1	16	36	1.55
34751788--34751836	24	2.0	24	96	0	89	28	18	12	40	1.86
34764222--34764276	20	2.8	19	86	10	83	40	9	0	50	1.34
34764224--34764284	21	2.8	22	75	25	67	39	9	0	50	1.35
34764248--34764284	15	2.4	16	86	13	60	37	10	0	51	1.37
34765019--34765064	16	2.9	15	87	6	56	50	0	6	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34765036--34765090	20	2.8	19	81	10	74	50	0	7	41	1.30
34767804--34767949	71	2.1	71	85	1	195	27	14	24	33	1.94
34776221--34776253	10	3.2	10	95	4	57	27	9	12	51	1.69
34777164--34777211	22	2.3	23	79	17	59	52	8	4	35	1.51
34777361--34777602	127	1.9	127	94	0	430	35	14	10	38	1.82
34781336--34781389	12	4.6	11	76	19	56	70	1	3	24	1.13
34783031--34783097	34	1.9	35	90	3	109	32	8	13	44	1.75
34784192--34784234	20	2.0	20	82	8	50	41	16	2	39	1.61
34789918--34789953	16	2.3	15	90	4	54	27	0	0	72	0.85
34790386--34790487	11	9.5	11	81	11	90	22	30	2	44	1.68
34790398--34790498	51	2.0	51	88	3	150	23	29	2	43	1.69
34790662--34790723	18	3.5	18	68	24	51	37	0	3	59	1.13
34791424--34791466	18	2.5	17	85	10	61	32	39	2	25	1.69
34792580--34792881	126	2.4	126	88	1	455	26	20	19	32	1.97
34792914--34793142	94	2.4	96	82	3	275	38	19	2	39	1.65
34797230--34797291	29	2.2	29	82	8	74	24	12	14	48	1.79
34822435--34822524	43	2.1	43	87	0	126	32	32	14	21	1.93
34822810--34822878	34	2.0	34	97	0	129	20	13	20	46	1.83
34823350--34823378	13	2.1	14	93	6	51	55	10	0	34	1.34
34827636--34827697	27	2.3	27	97	0	115	33	0	16	50	1.45
34827767--34827793	13	2.1	13	100	0	54	37	11	0	51	1.37
34830037--34830091	25	2.2	25	86	0	74	25	14	45	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34841776--34841809	17	2.0	17	100	0	68	35	5	29	29	1.81
34841903--34841946	22	2.0	22	100	0	88	31	13	9	45	1.75
34843719--34843758	19	2.1	19	90	0	62	37	20	10	32	1.85
34844533--34844731	101	2.0	98	91	2	317	28	18	18	34	1.94
34857373--34857918	86	6.5	84	82	4	516	44	10	13	32	1.77
34858726--34858774	20	2.5	20	86	0	62	57	6	6	30	1.48
34865282--34865342	27	2.2	28	77	5	72	24	32	24	18	1.97
34871804--34871860	25	2.3	25	93	3	98	40	17	14	28	1.88
34876698--34876725	1	28.0	1	100	0	56	100	0	0	0	0.00
34877670--34877762	26	3.4	25	67	30	66	23	9	2	64	1.35
34877686--34877778	26	3.4	26	70	18	80	22	10	2	64	1.36
34880169--34880194	13	2.0	13	100	0	52	38	7	15	38	1.76
34882444--34882553	30	3.7	30	82	2	123	42	10	20	27	1.83
34884658--34884694	15	2.5	15	100	0	74	40	27	21	10	1.86
34885387--34885411	4	6.2	4	100	0	50	76	0	0	24	0.80
34896876--34896935	31	1.9	31	93	0	102	38	15	15	31	1.88
34896908--34897195	143	2.0	142	90	0	450	37	11	16	34	1.86
34897248--34897367	59	2.0	60	98	1	233	46	6	5	41	1.52
34897347--34897374	2	14.0	2	100	0	56	50	0	0	50	1.00
34903311--34903366	29	1.9	29	88	0	85	62	1	3	32	1.23
34919170--34919196	11	2.5	11	100	0	54	48	18	0	33	1.49
34920331--34920384	23	2.3	23	96	3	99	40	14	18	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34923404--34923438	17	2.0	18	88	5	54	51	0	8	40	1.33
34927837--34927879	19	2.1	21	87	8	63	60	2	2	34	1.22
34928723--34928768	17	2.6	17	86	3	56	32	0	6	60	1.22
34929218--34929284	31	2.2	31	83	0	80	25	5	10	58	1.54
34929239--34929297	31	1.9	31	86	3	84	23	10	10	55	1.63
34929247--34929333	43	2.1	43	89	4	133	27	11	10	50	1.71
34930334--34930393	17	3.5	17	74	19	61	63	1	1	33	1.14
34931045--34931168	34	3.6	34	70	13	108	29	12	10	47	1.75
34931049--34931199	72	2.1	72	96	0	275	30	15	9	44	1.78
34931069--34931180	34	3.2	34	69	14	109	34	12	8	43	1.74
34931239--34931292	28	2.0	27	92	3	90	44	1	5	48	1.37
34934690--34934734	19	2.4	19	96	3	83	28	15	8	46	1.76
34939420--34939470	25	2.0	25	88	7	77	29	0	3	66	1.09
34942358--34942406	21	2.2	22	85	7	64	22	6	8	63	1.44
34942438--34942477	21	2.0	20	90	5	62	17	10	2	70	1.27
34943887--34943938	24	2.2	24	85	0	68	53	9	3	32	1.51
34945833--34945885	24	2.2	24	89	0	79	54	9	1	33	1.43
34946338--34946362	12	2.1	12	100	0	50	32	8	24	36	1.84
34950303--34950397	45	2.3	42	77	15	106	38	6	6	48	1.54
34952066--34952145	41	2.0	41	94	0	142	27	2	13	56	1.51
34955352--34955383	2	16.0	2	93	0	55	50	3	0	46	1.17
34956210--34956251	22	2.0	21	90	4	66	59	14	11	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34956206--34956343	62	2.3	60	81	9	165	50	10	10	27	1.71
34956679--34956711	10	3.0	11	86	13	50	45	9	3	42	1.51
34956784--34956833	20	2.6	19	81	6	55	40	0	0	60	0.97
34956792--34956833	20	2.1	20	86	0	57	40	0	0	59	0.97
34956784--34956839	20	2.8	20	78	8	51	41	3	0	55	1.17
34962193--34962244	14	3.6	14	82	10	52	69	1	9	19	1.26
34966821--34966848	14	2.0	14	100	0	56	14	0	35	50	1.43
34966974--34967021	24	2.0	25	83	4	62	68	4	6	20	1.28
34973673--34973703	9	3.4	9	90	0	53	25	12	22	38	1.90
34973757--34973793	9	4.1	9	92	0	65	45	13	10	29	1.77
34975183--34975208	5	5.2	5	100	0	52	19	19	19	42	1.90
34979079--34979112	16	2.1	16	100	0	68	11	5	32	50	1.63
34979662--34979703	21	2.0	21	95	0	75	30	16	19	33	1.94
34980230--34980332	51	2.0	51	94	0	179	20	11	26	41	1.86
34980752--34980820	32	2.2	32	94	0	120	30	18	13	37	1.89
34983030--34983157	64	2.0	64	93	0	220	52	14	13	20	1.74
34986059--34986180	43	2.8	43	81	14	144	29	30	19	20	1.97
34986402--34986523	43	2.8	43	81	14	144	29	30	19	20	1.97
34985970--34986661	343	2.0	343	99	0	1368	30	25	16	26	1.97
34987378--34987634	125	2.1	126	98	1	500	32	10	6	50	1.62
34988457--34988522	9	7.3	9	87	0	78	39	24	9	27	1.85
34988462--34988522	18	3.4	18	86	0	86	40	24	9	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34988584--34988625	21	2.0	21	100	0	84	33	0	4	61	1.17
34991985--34992014	13	2.3	13	94	0	51	46	13	16	23	1.82
34993773--34993853	40	2.0	40	100	0	162	22	27	17	33	1.96
34999006--34999048	20	2.2	20	100	0	86	32	9	13	44	1.76
35008187--35008239	21	2.3	24	81	12	67	41	0	0	58	0.98
35016550--35016584	18	1.9	18	88	0	52	34	5	2	57	1.37
35016631--35016694	20	3.2	20	82	2	67	35	3	1	59	1.23
35021974--35022035	26	2.4	26	89	2	90	40	14	16	29	1.88
35025145--35025304	63	2.5	63	96	2	295	31	9	14	44	1.77
35025145--35025301	31	5.0	31	93	3	269	31	9	14	44	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135