Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr9 Parameters: 2 7 7 80 10 50 1000 Length: 48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  92  of  135  ( 16172 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34669685--34669830
45
3.2
45
86
0
193
17
18
22
41
1.91
34669817--34669856
6
6.3
6
88
2
53
17
17
17
47
1.83
34675739--34675788
24
2.1
24
85
7
66
50
6
2
42
1.38
34683161--34683223
4
15.8
4
83
0
81
47
25
4
22
1.70
34687184--34687259
23
3.3
23
94
0
125
28
26
19
25
1.99
34688367--34688404
2
19.0
2
94
0
67
50
0
2
47
1.15
34704236--34704294
1
59.0
1
93
0
82
93
0
1
5
0.41
34704227--34704292
32
2.1
32
91
0
105
86
0
4
9
0.70
34708808--34708898
30
3.0
30
93
0
146
17
28
15
38
1.90
34718372--34718954
291
2.0
292
99
0
1159
39
14
9
36
1.79
34724193--34724227
10
3.4
10
92
7
61
25
2
8
62
1.38
34724194--34724240
21
2.2
21
81
7
51
34
2
6
57
1.36
34724222--34724263
18
2.3
18
80
8
50
40
0
0
59
0.97
34736096--34736142
19
2.6
18
71
18
51
48
17
0
34
1.47
34741199--34741327
63
2.0
63
93
0
222
35
14
13
36
1.85
34741694--34741718
12
2.1
12
100
0
50
32
0
16
52
1.44
34744759--34744853
31
3.1
31
70
10
86
45
1
16
36
1.55
34751788--34751836
24
2.0
24
96
0
89
28
18
12
40
1.86
34764222--34764276
20
2.8
19
86
10
83
40
9
0
50
1.34
34764224--34764284
21
2.8
22
75
25
67
39
9
0
50
1.35
34764248--34764284
15
2.4
16
86
13
60
37
10
0
51
1.37
34765019--34765064
16
2.9
15
87
6
56
50
0
6
43
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34765036--34765090
20
2.8
19
81
10
74
50
0
7
41
1.30
34767804--34767949
71
2.1
71
85
1
195
27
14
24
33
1.94
34776221--34776253
10
3.2
10
95
4
57
27
9
12
51
1.69
34777164--34777211
22
2.3
23
79
17
59
52
8
4
35
1.51
34777361--34777602
127
1.9
127
94
0
430
35
14
10
38
1.82
34781336--34781389
12
4.6
11
76
19
56
70
1
3
24
1.13
34783031--34783097
34
1.9
35
90
3
109
32
8
13
44
1.75
34784192--34784234
20
2.0
20
82
8
50
41
16
2
39
1.61
34789918--34789953
16
2.3
15
90
4
54
27
0
0
72
0.85
34790386--34790487
11
9.5
11
81
11
90
22
30
2
44
1.68
34790398--34790498
51
2.0
51
88
3
150
23
29
2
43
1.69
34790662--34790723
18
3.5
18
68
24
51
37
0
3
59
1.13
34791424--34791466
18
2.5
17
85
10
61
32
39
2
25
1.69
34792580--34792881
126
2.4
126
88
1
455
26
20
19
32
1.97
34792914--34793142
94
2.4
96
82
3
275
38
19
2
39
1.65
34797230--34797291
29
2.2
29
82
8
74
24
12
14
48
1.79
34822435--34822524
43
2.1
43
87
0
126
32
32
14
21
1.93
34822810--34822878
34
2.0
34
97
0
129
20
13
20
46
1.83
34823350--34823378
13
2.1
14
93
6
51
55
10
0
34
1.34
34827636--34827697
27
2.3
27
97
0
115
33
0
16
50
1.45
34827767--34827793
13
2.1
13
100
0
54
37
11
0
51
1.37
34830037--34830091
25
2.2
25
86
0
74
25
14
45
14
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34841776--34841809
17
2.0
17
100
0
68
35
5
29
29
1.81
34841903--34841946
22
2.0
22
100
0
88
31
13
9
45
1.75
34843719--34843758
19
2.1
19
90
0
62
37
20
10
32
1.85
34844533--34844731
101
2.0
98
91
2
317
28
18
18
34
1.94
34857373--34857918
86
6.5
84
82
4
516
44
10
13
32
1.77
34858726--34858774
20
2.5
20
86
0
62
57
6
6
30
1.48
34865282--34865342
27
2.2
28
77
5
72
24
32
24
18
1.97
34871804--34871860
25
2.3
25
93
3
98
40
17
14
28
1.88
34876698--34876725
1
28.0
1
100
0
56
100
0
0
0
0.00
34877670--34877762
26
3.4
25
67
30
66
23
9
2
64
1.35
34877686--34877778
26
3.4
26
70
18
80
22
10
2
64
1.36
34880169--34880194
13
2.0
13
100
0
52
38
7
15
38
1.76
34882444--34882553
30
3.7
30
82
2
123
42
10
20
27
1.83
34884658--34884694
15
2.5
15
100
0
74
40
27
21
10
1.86
34885387--34885411
4
6.2
4
100
0
50
76
0
0
24
0.80
34896876--34896935
31
1.9
31
93
0
102
38
15
15
31
1.88
34896908--34897195
143
2.0
142
90
0
450
37
11
16
34
1.86
34897248--34897367
59
2.0
60
98
1
233
46
6
5
41
1.52
34897347--34897374
2
14.0
2
100
0
56
50
0
0
50
1.00
34903311--34903366
29
1.9
29
88
0
85
62
1
3
32
1.23
34919170--34919196
11
2.5
11
100
0
54
48
18
0
33
1.49
34920331--34920384
23
2.3
23
96
3
99
40
14
18
25
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34923404--34923438
17
2.0
18
88
5
54
51
0
8
40
1.33
34927837--34927879
19
2.1
21
87
8
63
60
2
2
34
1.22
34928723--34928768
17
2.6
17
86
3
56
32
0
6
60
1.22
34929218--34929284
31
2.2
31
83
0
80
25
5
10
58
1.54
34929239--34929297
31
1.9
31
86
3
84
23
10
10
55
1.63
34929247--34929333
43
2.1
43
89
4
133
27
11
10
50
1.71
34930334--34930393
17
3.5
17
74
19
61
63
1
1
33
1.14
34931045--34931168
34
3.6
34
70
13
108
29
12
10
47
1.75
34931049--34931199
72
2.1
72
96
0
275
30
15
9
44
1.78
34931069--34931180
34
3.2
34
69
14
109
34
12
8
43
1.74
34931239--34931292
28
2.0
27
92
3
90
44
1
5
48
1.37
34934690--34934734
19
2.4
19
96
3
83
28
15
8
46
1.76
34939420--34939470
25
2.0
25
88
7
77
29
0
3
66
1.09
34942358--34942406
21
2.2
22
85
7
64
22
6
8
63
1.44
34942438--34942477
21
2.0
20
90
5
62
17
10
2
70
1.27
34943887--34943938
24
2.2
24
85
0
68
53
9
3
32
1.51
34945833--34945885
24
2.2
24
89
0
79
54
9
1
33
1.43
34946338--34946362
12
2.1
12
100
0
50
32
8
24
36
1.84
34950303--34950397
45
2.3
42
77
15
106
38
6
6
48
1.54
34952066--34952145
41
2.0
41
94
0
142
27
2
13
56
1.51
34955352--34955383
2
16.0
2
93
0
55
50
3
0
46
1.17
34956210--34956251
22
2.0
21
90
4
66
59
14
11
14
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34956206--34956343
62
2.3
60
81
9
165
50
10
10
27
1.71
34956679--34956711
10
3.0
11
86
13
50
45
9
3
42
1.51
34956784--34956833
20
2.6
19
81
6
55
40
0
0
60
0.97
34956792--34956833
20
2.1
20
86
0
57
40
0
0
59
0.97
34956784--34956839
20
2.8
20
78
8
51
41
3
0
55
1.17
34962193--34962244
14
3.6
14
82
10
52
69
1
9
19
1.26
34966821--34966848
14
2.0
14
100
0
56
14
0
35
50
1.43
34966974--34967021
24
2.0
25
83
4
62
68
4
6
20
1.28
34973673--34973703
9
3.4
9
90
0
53
25
12
22
38
1.90
34973757--34973793
9
4.1
9
92
0
65
45
13
10
29
1.77
34975183--34975208
5
5.2
5
100
0
52
19
19
19
42
1.90
34979079--34979112
16
2.1
16
100
0
68
11
5
32
50
1.63
34979662--34979703
21
2.0
21
95
0
75
30
16
19
33
1.94
34980230--34980332
51
2.0
51
94
0
179
20
11
26
41
1.86
34980752--34980820
32
2.2
32
94
0
120
30
18
13
37
1.89
34983030--34983157
64
2.0
64
93
0
220
52
14
13
20
1.74
34986059--34986180
43
2.8
43
81
14
144
29
30
19
20
1.97
34986402--34986523
43
2.8
43
81
14
144
29
30
19
20
1.97
34985970--34986661
343
2.0
343
99
0
1368
30
25
16
26
1.97
34987378--34987634
125
2.1
126
98
1
500
32
10
6
50
1.62
34988457--34988522
9
7.3
9
87
0
78
39
24
9
27
1.85
34988462--34988522
18
3.4
18
86
0
86
40
24
9
24
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34988584--34988625
21
2.0
21
100
0
84
33
0
4
61
1.17
34991985--34992014
13
2.3
13
94
0
51
46
13
16
23
1.82
34993773--34993853
40
2.0
40
100
0
162
22
27
17
33
1.96
34999006--34999048
20
2.2
20
100
0
86
32
9
13
44
1.76
35008187--35008239
21
2.3
24
81
12
67
41
0
0
58
0.98
35016550--35016584
18
1.9
18
88
0
52
34
5
2
57
1.37
35016631--35016694
20
3.2
20
82
2
67
35
3
1
59
1.23
35021974--35022035
26
2.4
26
89
2
90
40
14
16
29
1.88
35025145--35025304
63
2.5
63
96
2
295
31
9
14
44
1.77
35025145--35025301
31
5.0
31
93
3
269
31
9
14
44
1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135