genome.fa.s8.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  102  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37883269--37883359	7	12.4	7	69	17	51	19	1	37	41	1.59
37886428--37886478	21	2.4	21	86	0	66	31	19	47	1	1.61
37886859--37887141	42	6.8	42	91	2	428	34	22	20	22	1.96
37886860--37887141	124	2.3	125	90	4	444	34	22	20	22	1.96
37886859--37887186	166	2.0	168	84	2	437	33	22	20	23	1.97
37887917--37887985	28	2.5	28	83	4	77	27	23	7	42	1.80
37892214--37892294	32	2.5	32	82	4	92	34	28	8	28	1.87
37892249--37892413	60	2.7	61	81	1	206	32	24	12	31	1.92
37892536--37892636	53	1.9	53	87	0	148	29	18	14	36	1.91
37896780--37896971	101	1.9	101	90	0	303	20	26	19	33	1.96
37901663--37901730	3	22.7	3	96	0	127	69	0	30	0	0.89
37905255--37905293	5	7.6	5	82	5	51	41	0	17	41	1.50
37905831--37905878	24	2.0	24	83	0	60	16	16	25	41	1.89
37907735--37907766	5	6.4	5	100	0	64	21	0	0	78	0.76
37912385--37912496	27	4.1	27	81	0	143	24	22	18	34	1.96
37912392--37912496	54	1.9	54	90	0	165	23	21	20	34	1.97
37919476--37919503	2	14.0	2	100	0	56	50	0	0	50	1.00
37919483--37919563	40	2.0	41	97	2	155	43	14	0	41	1.46
37930247--37930280	17	2.0	17	100	0	68	35	5	11	47	1.65
37934829--37934879	25	2.0	25	84	0	66	27	29	23	19	1.98
37934836--37934929	25	3.8	25	82	2	109	29	22	22	25	1.99
37936661--37936737	37	2.1	37	100	0	154	28	12	12	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37937510--37937594	19	4.5	19	77	2	73	18	18	23	38	1.93
37946516--37946550	17	2.0	18	88	5	54	14	22	40	22	1.90
37946780--37947155	27	13.9	27	78	7	336	42	19	15	22	1.88
37946780--37947169	54	7.2	54	80	7	400	42	18	15	22	1.88
37947376--37947456	26	3.1	26	78	7	110	20	22	23	33	1.97
37947560--37947763	28	7.3	28	88	2	288	23	21	24	31	1.98
37962781--37963668	138	6.4	138	89	1	1280	45	5	8	39	1.59
37962788--37963668	277	3.2	274	87	2	1289	45	5	8	39	1.58
37967575--37967605	16	1.9	16	93	0	53	74	3	9	12	1.19
37975861--37975891	16	1.9	16	93	0	53	74	6	6	12	1.21
37977096--37977179	42	2.0	42	85	0	114	44	10	20	25	1.83
37978344--37978428	43	2.0	43	90	4	136	50	1	25	22	1.56
37978403--37978453	27	2.0	27	84	7	70	50	0	29	19	1.48
37982394--37982542	75	2.0	75	86	2	210	32	16	7	42	1.76
37999208--37999373	41	4.0	42	81	4	169	12	19	31	35	1.90
38031447--38031490	23	1.9	23	85	0	61	34	18	34	13	1.90
38035298--38035351	24	2.2	24	86	3	72	18	27	12	40	1.87
38039465--38039510	20	2.3	18	82	17	56	52	2	2	43	1.25
38041389--38041519	65	2.0	65	100	0	262	38	15	18	27	1.90
38057162--38057236	29	2.5	31	78	8	75	37	25	21	16	1.93
38057278--38057334	30	2.0	30	89	6	91	33	29	17	19	1.95
38059602--38059647	23	1.9	23	86	8	65	73	2	2	21	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38059650--38059679	12	2.5	12	100	0	60	60	0	6	33	1.23
38065250--38065394	27	5.4	27	84	0	175	33	18	24	24	1.97
38065542--38065601	27	2.2	27	88	11	88	21	25	21	31	1.98
38065555--38065607	27	2.0	27	85	7	72	24	26	18	30	1.98
38065589--38065668	26	3.1	26	88	0	115	16	20	26	37	1.93
38065671--38065826	32	4.9	32	86	4	199	23	17	19	39	1.92
38065671--38065844	64	2.7	64	80	11	196	22	17	19	40	1.92
38074252--38074808	138	4.1	139	86	5	783	46	6	7	39	1.58
38090179--38090263	24	3.6	23	81	9	82	14	37	5	42	1.69
38092188--38092236	18	2.7	19	78	9	57	42	2	30	24	1.66
38104665--38104717	28	1.9	27	85	11	72	60	1	0	37	1.08
38106420--38106463	23	1.9	23	86	9	63	27	15	4	52	1.63
38107349--38107396	25	2.0	25	91	4	80	50	2	4	43	1.33
38109723--38109773	24	2.2	23	89	3	75	19	19	21	39	1.93
38109723--38109790	24	2.8	24	84	8	68	17	19	23	39	1.92
38112151--38112187	15	2.4	16	90	4	58	29	8	16	45	1.76
38115331--38115407	24	3.2	24	85	3	102	19	10	38	31	1.85
38116818--38116927	46	2.4	46	87	3	168	33	26	20	20	1.96
38118927--38119074	24	6.2	24	76	6	131	15	10	37	37	1.81
38118974--38119064	47	1.9	47	90	0	146	17	9	37	35	1.83
38118916--38119074	71	2.2	72	82	3	187	16	10	36	36	1.83
38120484--38120548	29	2.2	29	91	0	103	44	15	12	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38123242--38123318	31	2.5	32	85	8	106	48	7	16	27	1.74
38123336--38123367	13	2.4	14	90	10	50	40	0	0	59	0.97
38124070--38124348	145	1.9	145	81	5	333	50	8	16	23	1.73
38126400--38126554	50	3.1	50	60	20	113	34	14	18	32	1.90
38126400--38126628	102	2.2	102	100	0	458	33	13	19	32	1.91
38127486--38127516	9	3.4	9	90	0	53	25	12	22	38	1.90
38130395--38130853	228	2.0	228	96	0	855	28	26	13	31	1.94
38136869--38137022	76	2.0	77	94	1	274	30	27	17	24	1.97
38139224--38139270	20	2.3	20	96	0	85	55	10	4	29	1.53
38141280--38141404	35	3.4	35	69	18	117	25	6	3	64	1.32
38141251--38141405	77	2.0	78	98	1	303	29	7	3	59	1.43
38145771--38145835	13	5.5	13	70	20	61	36	0	15	47	1.46
38145771--38145835	23	2.8	23	97	0	121	36	0	15	47	1.46
38147293--38147337	23	2.0	23	95	0	81	42	2	8	46	1.47
38148160--38148210	18	2.9	17	80	16	50	17	5	1	74	1.11
38153042--38153112	29	2.3	30	85	7	90	35	0	12	52	1.40
38153279--38153348	31	2.3	30	82	4	79	41	12	8	37	1.74
38157097--38157179	32	2.6	32	86	3	114	36	20	12	31	1.89
38161016--38161041	11	2.4	11	100	0	52	50	19	0	30	1.48
38171624--38171815	100	1.9	99	86	3	269	34	22	15	27	1.94
38172676--38172769	49	1.9	49	97	0	179	23	26	7	42	1.80
38173989--38174074	43	2.0	43	83	0	109	23	23	1	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38175233--38175265	16	1.9	18	88	11	52	21	12	0	66	1.23
38175459--38175492	16	2.0	18	88	11	54	47	14	0	38	1.45
38180389--38180482	49	1.9	49	88	0	143	26	23	6	43	1.77
38181721--38181768	25	1.9	25	86	0	69	22	18	4	54	1.61
38182883--38182915	16	1.9	18	88	11	52	21	12	0	66	1.23
38186111--38186265	39	4.0	39	81	0	175	34	18	29	17	1.94
38186091--38186273	78	2.3	77	84	3	231	34	18	28	18	1.94
38188524--38189624	550	2.0	550	98	0	2114	38	11	19	30	1.88
38193638--38197923	705	6.2	689	78	8	3725	37	13	12	36	1.82
38197932--38198215	143	2.0	143	89	0	433	39	21	10	28	1.86
38198737--38198817	25	3.2	24	69	19	67	48	27	6	18	1.72
38198749--38198786	19	2.0	20	84	5	51	44	23	7	23	1.79
38200272--38200320	7	7.3	7	81	4	57	46	36	0	16	1.47
38200792--38200926	69	2.0	69	84	10	179	50	5	14	28	1.67
38205051--38205158	40	2.7	40	81	5	137	37	17	27	16	1.92
38207721--38207918	50	3.8	50	84	4	234	28	21	27	22	1.99
38209857--38209960	26	3.9	26	73	14	79	19	6	1	72	1.17
38209875--38209930	21	2.7	19	79	15	67	19	5	0	75	1.00
38211540--38211606	6	11.0	6	80	15	66	14	4	4	76	1.11
38215889--38215939	25	2.0	25	84	0	66	58	21	5	13	1.56
38216197--38216302	54	2.0	53	85	5	142	46	11	7	34	1.68
38216891--38216971	11	7.4	11	89	6	112	19	34	0	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38218577--38218601	7	3.6	7	100	0	50	28	0	12	60	1.32
38219227--38219269	18	2.4	18	88	0	59	16	30	9	44	1.79
38219510--38219569	21	2.9	21	80	5	68	30	46	18	5	1.70
38219688--38219755	34	2.0	35	91	2	111	44	1	7	47	1.40
38219695--38219784	34	2.6	34	85	7	101	45	3	5	45	1.43
38222963--38223256	125	2.3	125	88	0	444	26	21	19	33	1.97
38225777--38225807	16	1.9	16	100	0	62	35	0	6	58	1.24
38229702--38229781	26	3.1	26	79	13	85	15	5	37	42	1.68
38230489--38230529	15	2.8	15	88	3	57	12	7	4	75	1.16
38238922--38238967	24	2.0	23	86	4	65	41	8	8	41	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135