genome.fa.s8.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  113  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41436071--41436103	17	2.0	16	94	5	57	57	0	0	42	0.98
41436846--41436896	20	2.5	20	75	15	50	45	33	5	15	1.71
41443162--41443224	30	2.1	30	93	0	108	28	3	11	57	1.49
41448104--41448128	10	2.5	10	100	0	50	68	0	0	32	0.90
41448347--41448417	24	3.0	24	85	0	97	45	0	35	19	1.51
41453593--41453617	4	6.2	4	100	0	50	24	0	0	76	0.80
41463218--41463245	3	9.3	3	100	0	56	35	0	32	32	1.58
41473708--41473732	13	1.9	13	100	0	50	32	4	8	56	1.47
41473832--41474080	50	4.8	50	86	3	291	26	23	28	20	1.99
41473832--41474081	100	2.4	103	85	5	335	26	23	28	21	1.99
41487696--41487721	12	2.2	12	100	0	52	46	0	0	53	1.00
41487907--41487939	16	2.1	16	100	0	66	30	0	6	63	1.18
41499492--41499533	19	2.3	19	91	4	68	57	0	0	42	0.99
41512976--41513019	21	2.0	23	86	8	65	52	0	4	43	1.22
41518222--41518257	5	7.2	5	100	0	72	22	0	19	58	1.40
41520239--41520273	7	5.0	7	100	0	70	42	0	28	28	1.56
41520333--41520370	20	1.9	20	89	10	60	44	5	0	50	1.24
41522820--41523227	211	2.0	210	91	1	660	37	9	9	42	1.71
41525423--41525533	57	2.0	56	90	1	177	27	21	17	34	1.95
41526289--41526360	36	2.0	36	100	0	144	36	8	19	36	1.82
41526446--41526915	233	2.0	233	99	0	933	37	15	15	31	1.89
41527270--41527311	20	2.1	20	82	8	50	69	2	2	26	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41528834--41528883	22	2.4	22	83	6	68	32	0	4	64	1.12
41531820--41531860	20	2.0	21	90	4	66	21	2	41	34	1.67
41535030--41535276	132	1.9	132	83	3	327	27	21	18	32	1.97
41535248--41535765	89	5.8	89	91	0	777	29	23	15	30	1.96
41535249--41535796	44	12.4	44	80	2	585	30	23	15	30	1.95
41539919--41539958	19	2.0	20	85	4	55	47	10	20	22	1.79
41547783--41547812	15	2.0	15	100	0	60	40	6	13	40	1.71
41548238--41548298	23	2.6	22	77	10	59	54	1	24	19	1.54
41548765--41548822	17	3.5	17	74	21	61	25	5	5	63	1.36
41549654--41549742	45	2.0	45	97	0	169	29	11	8	50	1.68
41550222--41550249	9	3.1	9	100	0	56	57	10	0	32	1.33
41550183--41550333	68	2.3	66	96	2	275	45	8	4	41	1.55
41550322--41550363	16	2.6	16	92	0	66	42	7	2	47	1.43
41550337--41550392	23	2.5	23	82	2	69	44	1	1	51	1.22
41550183--41550355	68	2.7	66	90	7	243	46	8	4	41	1.53
41556006--41556065	30	2.0	30	90	0	93	6	18	30	45	1.75
41573373--41573420	17	2.8	17	77	0	51	39	8	0	52	1.32
41577485--41577537	26	2.0	28	92	7	92	16	22	11	49	1.78
41586663--41586691	14	2.1	14	100	0	58	37	13	20	27	1.91
41586955--41587533	288	2.0	291	98	1	1119	28	18	17	35	1.94
41589960--41590000	21	1.9	22	85	5	57	48	2	12	36	1.54
41594337--41594378	16	2.5	17	81	11	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41600778--41600803	13	2.0	13	100	0	52	30	0	38	30	1.58
41602256--41602289	16	2.1	16	88	0	50	50	11	23	14	1.76
41603826--41603858	16	2.0	17	88	5	50	24	3	12	60	1.46
41608433--41608483	19	2.6	20	78	6	59	37	1	5	54	1.36
41610527--41610576	20	2.5	20	86	0	73	18	22	18	42	1.90
41611332--41611361	2	15.5	2	93	6	53	46	0	0	53	1.00
41612122--41612156	17	2.1	17	94	0	61	25	20	25	28	1.99
41616506--41616557	27	1.9	27	84	0	68	55	3	0	40	1.18
41616548--41616583	18	2.0	18	88	0	54	55	2	0	41	1.14
41629399--41629476	32	2.4	32	85	6	95	20	25	37	16	1.93
41630880--41631043	40	4.1	40	89	0	247	11	15	28	43	1.82
41631716--41631754	12	3.2	12	88	0	60	5	17	43	33	1.72
41635244--41635304	32	1.9	32	83	6	79	45	1	3	49	1.28
41640591--41640671	42	1.9	42	94	0	144	45	22	3	28	1.69
41640599--41640685	42	2.1	42	89	4	131	47	21	4	26	1.70
41647199--41647233	18	1.9	18	100	0	70	37	5	28	28	1.80
41647410--41647533	64	1.9	64	96	0	230	37	14	11	36	1.82
41662049--41662084	18	2.0	18	88	0	54	55	2	0	41	1.14
41673171--41673236	32	2.1	32	97	0	123	21	12	22	43	1.85
41674888--41674944	26	2.1	27	81	15	66	47	0	5	47	1.24
41675153--41675257	52	2.0	52	96	0	192	34	17	21	26	1.95
41680618--41680659	22	1.9	22	90	0	66	16	9	7	66	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41680618--41680670	22	2.4	22	83	0	61	15	11	5	67	1.38
41680811--41680835	13	1.9	13	100	0	50	32	0	0	68	0.90
41680865--41680906	16	2.6	17	77	7	52	26	0	4	69	1.08
41687385--41687431	3	15.7	3	95	0	85	65	2	0	31	1.04
41695114--41695156	22	2.0	22	85	0	59	62	11	4	20	1.46
41700752--41700960	72	2.9	71	77	5	222	29	16	20	33	1.95
41703210--41703283	11	6.8	11	71	22	50	40	2	0	56	1.13
41703203--41703283	41	2.0	41	95	4	146	38	2	0	59	1.11
41703234--41703267	17	2.0	17	94	0	59	32	0	0	67	0.91
41709708--41709784	29	2.5	31	85	4	104	25	12	14	46	1.80
41711041--41711096	21	2.6	21	77	8	60	23	1	7	67	1.24
41719524--41719621	47	2.1	47	84	3	126	45	5	4	44	1.44
41720693--41720818	63	2.0	63	98	0	243	25	13	28	32	1.94
41725075--41725126	16	3.2	16	94	0	86	28	0	36	34	1.58
41725107--41725216	45	2.6	43	80	9	129	33	5	29	31	1.80
41726698--41726733	15	2.4	15	100	0	72	44	11	8	36	1.70
41730705--41730736	9	3.6	9	91	0	55	28	0	25	46	1.53
41732811--41732904	28	3.5	26	72	16	75	40	0	2	57	1.11
41735095--41735123	14	2.1	14	93	6	51	37	0	6	55	1.27
41735579--41735716	43	3.2	43	83	4	161	33	22	15	28	1.95
41735547--41735716	43	4.0	43	77	6	148	32	22	15	30	1.95
41738208--41738246	9	4.3	9	86	0	60	30	2	25	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41738300--41738336	19	1.9	19	100	0	74	37	0	18	43	1.51
41738302--41738336	9	3.8	9	92	7	61	37	0	20	42	1.52
41742003--41742212	7	30.1	7	72	4	129	47	33	0	18	1.55
41742007--41742212	36	5.7	34	75	10	133	47	32	0	18	1.56
41742126--41742176	27	1.9	26	84	4	66	45	29	1	23	1.64
41742558--41742778	107	2.1	106	85	5	295	27	22	17	32	1.96
41742849--41742945	40	2.5	40	86	1	133	25	24	20	28	1.99
41749834--41749886	22	2.3	23	78	15	56	45	26	5	22	1.74
41751245--41751276	3	10.7	3	100	0	64	0	34	0	65	0.93
41752430--41752464	17	2.1	17	94	0	61	31	8	28	31	1.87
41756827--41756860	3	11.3	3	100	0	68	32	0	0	67	0.91
41760755--41760811	25	2.3	24	80	13	71	19	3	21	56	1.57
41770192--41770238	15	3.1	15	84	6	51	17	40	12	29	1.86
41777066--41777115	13	4.2	12	78	16	59	54	2	0	44	1.11
41779681--41779744	32	2.0	32	100	0	128	18	18	6	56	1.62
41803429--41803739	104	3.1	98	60	26	210	42	6	7	43	1.59
41803395--41803813	208	2.0	209	99	0	831	42	6	7	43	1.57
41822295--41822342	22	2.2	23	85	7	64	66	12	6	14	1.42
41839996--41840056	19	3.2	19	97	2	113	36	16	9	37	1.82
41847451--41847503	22	2.4	22	96	0	97	32	26	3	37	1.74
41864201--41864246	23	2.0	22	84	12	58	78	4	0	17	0.91
41866521--41866611	40	2.2	40	82	5	103	34	23	21	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41866698--41866937	41	5.9	41	88	0	345	19	23	26	30	1.98
41868040--41868111	33	2.2	33	82	0	81	19	4	40	36	1.71
41873447--41873749	43	7.1	43	83	3	335	27	18	28	26	1.98
41873447--41873749	86	3.5	86	82	4	371	27	18	28	26	1.98
41873447--41873749	129	2.3	127	86	5	410	27	18	28	26	1.98
41874791--41874866	38	2.0	38	100	0	152	31	23	15	28	1.96
41884119--41884340	75	3.0	75	97	2	421	38	9	8	44	1.66
41889994--41890039	24	1.9	24	86	8	67	26	2	2	69	1.11
41922150--41922196	20	2.2	20	85	7	58	29	10	12	46	1.76
41925028--41925064	18	2.0	19	89	5	58	75	5	8	10	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135