genome.fa.s8.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  131  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47216470--47216680	110	1.9	111	87	0	307	36	20	20	22	1.96
47223226--47223273	21	2.3	21	96	0	87	33	18	2	45	1.61
47223267--47223293	10	2.7	10	100	0	54	29	29	7	33	1.85
47224608--47224652	23	2.0	23	87	12	67	31	8	2	57	1.41
47224890--47225047	75	2.1	75	93	0	271	37	5	34	22	1.78
47225099--47225179	3	27.3	3	94	2	146	34	0	34	30	1.58
47233572--47233629	28	2.1	28	90	0	89	56	13	18	10	1.65
47234132--47234198	29	2.4	27	82	5	71	22	4	0	73	1.01
47234130--47234192	27	2.3	26	81	10	72	23	3	0	73	0.98
47234862--47234962	11	9.9	11	69	23	69	38	1	0	59	1.09
47234852--47234962	40	2.8	40	98	0	213	37	1	0	60	1.07
47239282--47239353	35	2.1	35	100	0	144	33	13	11	41	1.80
47244381--47244406	3	8.7	3	100	0	52	0	0	30	69	0.89
47255651--47255697	23	2.1	23	88	4	69	38	0	17	44	1.48
47258012--47258036	7	3.6	7	100	0	50	84	0	0	16	0.63
47260040--47260080	20	2.0	20	100	0	82	26	24	24	24	2.00
47271997--47272034	19	2.0	19	94	0	67	36	23	5	34	1.78
47280271--47280319	9	5.4	9	92	0	80	44	16	10	28	1.80
47280970--47281019	21	2.4	21	93	3	84	58	12	0	30	1.34
47287855--47287893	14	2.8	14	88	0	60	20	2	7	69	1.26
47293672--47293709	20	2.0	19	90	10	60	47	10	0	42	1.38
47306029--47306145	62	1.9	60	84	3	153	37	3	8	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47309175--47309693	124	4.2	125	86	3	661	29	16	15	38	1.90
47309175--47309693	250	2.1	249	85	3	677	29	16	15	38	1.90
47309774--47309839	34	1.9	35	93	3	116	43	12	0	43	1.41
47309779--47309864	34	2.7	31	84	12	97	41	16	0	41	1.48
47309900--47309937	16	2.4	16	86	4	51	50	34	0	15	1.45
47313505--47313548	21	2.1	21	91	0	70	38	9	13	38	1.77
47313504--47313559	21	2.8	20	83	5	69	35	8	17	37	1.82
47313693--47313781	43	2.1	43	93	0	151	53	6	16	22	1.66
47321301--47321966	44	15.1	45	65	10	203	26	22	26	24	2.00
47321301--47321989	351	2.0	351	87	1	995	25	23	25	25	2.00
47321301--47321989	88	7.8	88	90	0	921	25	23	25	25	2.00
47321990--47322338	44	7.9	44	84	3	409	30	15	23	30	1.95
47321597--47322407	264	3.1	263	78	3	657	28	18	24	27	1.98
47321916--47322404	133	3.7	131	85	2	581	31	17	23	28	1.97
47321990--47322404	89	4.7	89	76	3	392	31	15	23	29	1.95
47322749--47322806	19	2.7	22	82	10	59	34	8	18	37	1.82
47330439--47330506	25	2.8	24	88	4	91	17	26	19	36	1.94
47330448--47330516	25	2.8	25	89	8	97	18	26	18	36	1.94
47331787--47331828	21	2.0	22	85	4	59	30	2	19	47	1.62
47333787--47333816	15	2.0	15	100	0	60	33	13	33	20	1.91
47336865--47336895	14	2.1	15	94	5	55	61	6	0	32	1.21
47337148--47337215	34	2.0	34	82	5	84	22	25	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47340595--47340651	20	2.7	21	76	10	55	36	0	8	54	1.32
47340761--47340890	25	5.2	25	80	8	122	20	26	21	30	1.98
47350699--47350751	9	5.9	9	90	0	88	47	20	7	24	1.76
47354619--47354658	9	4.4	9	90	0	62	37	25	10	27	1.88
47354666--47354728	17	3.5	17	69	12	54	49	12	3	34	1.57
47354657--47354731	37	2.0	37	94	0	132	45	14	4	36	1.64
47354839--47354957	53	2.2	53	100	0	238	25	3	26	45	1.69
47354916--47355032	39	3.0	39	86	1	164	21	2	24	51	1.60
47355329--47355371	21	2.1	20	83	12	52	32	4	4	58	1.39
47358803--47358837	17	2.1	17	94	0	61	71	2	0	25	1.00
47358791--47358838	13	3.7	13	83	10	53	66	4	2	27	1.21
47359018--47359056	17	2.3	16	87	12	60	25	5	5	64	1.35
47360287--47360330	20	2.2	20	88	8	63	27	2	4	65	1.23
47360327--47360366	19	2.0	20	90	4	64	27	0	5	67	1.11
47361007--47361057	24	2.2	24	82	10	61	60	3	0	35	1.15
47361016--47361069	24	2.3	24	81	15	69	59	3	0	37	1.15
47361016--47361069	22	2.3	25	81	15	71	59	3	0	37	1.15
47363288--47363336	17	2.6	19	78	18	57	38	18	14	28	1.90
47368938--47369040	42	2.4	42	87	4	136	27	12	27	33	1.93
47375154--47375180	12	2.2	12	100	0	54	66	0	33	0	0.92
47383087--47383128	17	2.4	18	84	4	59	33	0	4	61	1.17
47383086--47383193	9	11.8	9	67	20	55	27	3	1	66	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47383085--47383145	27	2.3	25	79	20	70	29	3	3	63	1.26
47383082--47383153	28	2.7	25	79	12	72	29	2	2	65	1.21
47383133--47383191	18	3.2	17	80	17	64	22	5	0	72	1.03
47383358--47383452	18	5.2	18	67	9	59	29	3	2	65	1.20
47383371--47383412	17	2.4	18	84	4	59	33	0	4	61	1.17
47383370--47383477	9	11.8	9	67	20	55	27	3	1	66	1.19
47383369--47383429	27	2.3	25	79	20	70	29	3	3	63	1.26
47383352--47383437	28	3.1	25	77	15	73	30	2	2	65	1.18
47383331--47383477	18	7.9	18	69	19	56	30	2	2	64	1.19
47382994--47383561	284	2.0	284	98	0	1102	33	7	6	52	1.57
47388267--47388361	9	10.4	9	86	6	129	22	10	27	40	1.86
47388522--47388546	12	2.1	12	100	0	50	16	24	36	24	1.94
47388620--47388655	18	2.0	18	100	0	72	27	27	5	38	1.79
47390351--47390405	27	2.0	27	86	6	76	45	0	29	25	1.54
47390338--47390394	20	3.0	18	82	10	69	45	0	31	22	1.53
47394918--47395243	87	3.8	87	85	4	471	24	23	21	29	1.99
47394918--47395243	172	1.9	173	89	1	512	24	23	21	29	1.99
47396465--47396538	13	5.5	14	72	22	52	13	16	0	70	1.17
47396466--47396525	19	3.0	21	83	11	63	15	13	0	71	1.14
47396476--47396538	7	9.4	7	87	5	87	12	14	0	73	1.11
47396476--47396538	33	1.9	33	90	0	99	12	14	0	73	1.11
47396465--47396538	14	5.5	14	84	10	84	13	16	0	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47402485--47402530	24	2.0	23	86	4	65	69	10	6	13	1.35
47403897--47404031	51	2.6	51	86	9	186	25	15	31	27	1.96
47406097--47406142	8	5.8	8	92	0	65	45	0	32	21	1.52
47406097--47406148	16	3.3	16	89	2	70	48	0	32	19	1.49
47406237--47406271	6	5.5	6	87	12	52	60	0	17	22	1.37
47406237--47406269	14	2.5	13	90	9	50	60	0	15	24	1.35
47406490--47407041	272	2.0	272	88	0	827	37	15	15	31	1.89
47412937--47413076	40	3.5	39	72	10	115	36	18	21	23	1.95
47413128--47413406	41	6.8	41	89	1	407	21	22	25	31	1.98
47414264--47414319	7	8.1	7	76	11	53	19	1	39	39	1.62
47416981--47417240	129	2.0	129	96	0	484	51	4	6	38	1.47
47418131--47418165	16	2.2	16	94	0	61	14	11	14	60	1.60
47419519--47419875	43	8.3	43	79	2	349	25	18	28	27	1.98
47421776--47421810	18	1.9	18	88	0	52	62	0	17	20	1.32
47425069--47425141	38	1.9	37	86	8	103	31	19	1	47	1.58
47425129--47425172	23	1.9	22	82	17	54	38	22	0	38	1.55
47425242--47425429	45	4.2	45	88	1	236	32	25	20	21	1.98
47427677--47427714	19	2.0	20	85	15	53	71	0	5	23	1.07
47428207--47428372	86	1.9	86	84	4	219	50	4	6	39	1.48
47430790--47430815	6	4.3	6	100	0	52	84	0	15	0	0.62
47431309--47431352	23	2.0	22	90	4	70	65	4	0	29	1.12
47435437--47435481	19	2.3	20	82	17	60	37	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47438739--47438787	19	2.8	17	81	9	53	71	2	6	20	1.18
47439711--47439911	94	2.1	94	87	1	287	21	30	21	26	1.98
47442812--47442853	22	2.0	22	81	13	52	71	4	9	14	1.28
47446431--47446561	68	1.9	68	84	3	174	23	16	26	33	1.95
47448216--47448261	24	1.9	24	95	0	83	21	10	15	52	1.73
47449374--47449423	24	2.1	24	100	0	100	20	20	20	40	1.92
47457292--47457338	19	2.6	18	86	6	67	31	8	21	38	1.83
47457906--47458565	69	9.7	69	89	2	935	25	10	21	42	1.84
47458241--47458349	35	3.1	35	60	17	82	24	9	21	44	1.81
47477456--47477493	20	2.0	20	84	5	51	55	15	10	18	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135