genome.fa.s8.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  26  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10111762--10111816	14	4.0	14	70	13	51	25	23	21	29	1.99
10119671--10119721	24	2.0	24	85	7	66	68	0	17	13	1.21
10121955--10122018	20	3.2	20	93	2	101	50	6	1	42	1.37
10125112--10125757	215	3.0	215	93	1	1100	29	25	13	31	1.93
10130397--10130513	4	29.2	4	72	14	64	70	2	3	23	1.14
10130393--10130507	22	5.3	21	67	11	70	71	2	3	22	1.14
10130444--10130477	13	2.6	13	95	0	59	85	5	2	5	0.83
10132124--10132412	44	6.4	44	74	8	188	29	20	20	30	1.97
10132297--10132413	46	2.6	45	87	1	162	26	22	22	29	1.99
10143845--10143880	16	2.3	16	90	4	56	69	0	0	30	0.89
10143843--10143892	21	2.3	21	83	10	57	68	2	2	28	1.12
10144144--10144178	6	5.8	6	86	0	52	62	0	2	34	1.10
10147558--10147692	72	1.9	72	85	3	191	37	8	12	40	1.75
10155893--10156124	63	3.8	62	82	9	305	41	16	6	36	1.73
10155893--10156129	123	1.9	123	97	0	447	41	16	6	35	1.74
10163984--10164154	60	2.8	61	80	11	197	43	17	4	33	1.70
10163949--10164160	61	3.5	58	77	10	201	44	16	4	34	1.67
10166026--10166098	28	2.6	29	84	8	96	32	21	5	39	1.77
10166131--10166192	32	1.9	32	83	6	81	56	17	0	25	1.41
10169763--10169798	6	6.0	6	96	0	63	16	2	0	80	0.83
10172891--10173218	164	2.0	164	93	1	559	20	31	18	29	1.96
10173408--10173444	15	2.4	16	91	8	60	75	0	13	10	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10174765--10174853	29	3.0	27	71	14	70	62	4	2	30	1.27
10175310--10175342	18	1.9	17	88	11	50	63	18	12	6	1.48
10181495--10181588	45	2.1	45	95	0	170	35	25	8	30	1.86
10181685--10181748	32	2.0	32	93	0	110	29	18	3	48	1.64
10197329--10197406	39	2.0	39	97	0	147	47	11	7	33	1.68
10199542--10199575	16	2.1	16	88	0	50	55	2	0	41	1.15
10199811--10199844	13	2.6	13	85	0	50	50	14	2	32	1.58
10201392--10201430	20	2.0	19	85	5	51	53	2	2	41	1.28
10202102--10202148	16	2.9	16	74	0	58	40	2	2	55	1.24
10204014--10204116	27	3.6	27	70	17	73	59	0	6	33	1.30
10204452--10204528	3	25.7	3	100	0	154	66	0	0	33	0.92
10204792--10204890	49	2.0	48	81	12	114	44	27	4	24	1.71
10205269--10205318	21	2.4	21	75	0	55	18	30	46	6	1.73
10208944--10209009	29	2.2	30	84	7	82	48	33	0	18	1.48
10210044--10210077	2	17.0	2	100	0	68	0	50	0	50	1.00
10216381--10216515	62	2.2	59	82	11	164	39	0	3	56	1.22
10227777--10227827	25	2.2	24	83	13	63	49	39	3	7	1.51
10229040--10229076	19	2.0	19	94	5	67	16	16	21	45	1.84
10229075--10229153	3	26.3	3	70	10	54	29	10	1	59	1.38
10229782--10229822	20	2.0	20	100	0	82	29	9	9	51	1.67
10241399--10242006	132	4.6	132	87	2	790	29	19	25	25	1.98
10242004--10242112	51	2.1	51	84	0	137	32	16	24	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10242012--10242129	51	2.3	51	80	0	128	29	20	21	28	1.98
10243735--10243813	3	26.3	3	70	10	54	29	10	1	59	1.38
10245213--10245291	3	26.3	3	70	10	54	29	10	1	59	1.38
10246920--10247714	8	99.6	8	97	0	1450	13	0	36	50	1.42
10251669--10251710	18	2.3	19	79	4	50	50	0	4	45	1.23
10253557--10253592	5	7.4	5	93	6	65	58	0	0	41	0.98
10254691--10254733	10	4.2	10	80	14	52	55	2	11	30	1.48
10254692--10254733	21	2.0	21	86	9	59	57	2	11	28	1.47
10256013--10256127	40	2.9	39	83	3	149	41	26	15	15	1.87
10256013--10256141	40	3.3	39	79	7	143	41	27	16	14	1.87
10257566--10257621	28	2.0	28	100	0	112	35	14	14	35	1.86
10259210--10259286	38	2.0	38	94	0	136	22	25	31	20	1.98
10259252--10259410	66	2.4	66	80	6	178	25	21	28	23	1.99
10259474--10259539	30	2.2	30	88	0	96	22	33	24	19	1.97
10271028--10271102	23	3.0	25	82	7	91	46	10	16	26	1.79
10271028--10271102	12	6.2	12	80	9	80	46	10	16	26	1.79
10274764--10275056	146	2.0	147	97	2	563	57	7	10	24	1.57
10275230--10275645	19	21.9	19	89	0	643	34	7	18	39	1.79
10275230--10275645	38	10.9	38	99	0	823	34	7	18	39	1.79
10280921--10280953	14	2.3	15	89	5	50	27	12	33	27	1.92
10282281--10282954	88	7.7	88	83	2	798	27	25	24	21	2.00
10282281--10282954	176	3.8	177	89	1	989	27	25	24	21	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10284652--10284681	3	10.0	3	100	0	60	33	0	0	66	0.92
10286322--10286371	19	2.6	19	93	0	91	36	10	16	38	1.82
10288366--10288398	12	2.8	12	95	0	57	60	0	0	39	0.97
10288448--10288496	25	1.9	26	91	4	82	61	2	6	30	1.32
10290714--10290770	9	6.7	9	75	16	50	66	1	7	24	1.26
10291517--10291565	25	2.0	25	87	0	71	36	0	18	44	1.50
10293272--10293366	49	1.9	50	91	2	156	43	7	24	25	1.80
10299093--10299290	105	1.9	101	84	6	263	30	16	24	28	1.97
10299093--10299352	105	2.6	101	79	10	260	30	16	25	26	1.97
10299231--10299307	33	2.3	32	82	6	91	32	18	23	25	1.97
10301186--10301496	155	2.0	156	99	0	615	37	9	9	43	1.69
10309729--10309881	76	2.0	76	98	0	297	29	11	6	52	1.61
10311162--10311425	73	3.5	74	81	5	298	34	21	18	24	1.96
10311304--10311417	36	3.1	35	66	17	81	36	21	18	23	1.95
10323643--10323689	21	2.2	22	88	3	69	63	4	0	31	1.13
10332118--10332171	20	2.7	19	83	11	63	35	5	9	50	1.58
10332898--10332930	16	2.0	17	88	5	50	51	0	3	45	1.16
10350917--10350946	16	1.9	15	93	6	51	53	0	0	46	1.00
10352644--10352689	22	2.1	22	95	0	83	30	21	4	43	1.72
10370261--10370292	3	10.7	3	100	0	64	31	0	0	68	0.90
10372788--10372851	20	3.2	19	79	16	67	46	9	6	37	1.61
10374532--10374557	7	3.7	7	100	0	52	15	30	11	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10374534--10374652	51	2.3	51	97	0	220	26	23	15	34	1.95
10381736--10381774	20	2.0	20	85	10	53	41	12	0	46	1.42
10400764--10400790	2	13.5	2	100	0	54	0	48	0	51	1.00
10401164--10401232	3	23.0	3	90	0	111	0	31	2	65	1.08
10402241--10402307	32	2.1	32	100	0	134	37	25	13	23	1.92
10408099--10408220	51	2.5	48	76	11	129	54	6	3	35	1.42
10415166--10415233	34	2.0	34	100	0	136	44	20	17	17	1.87
10416938--10416977	19	2.1	19	86	9	55	55	5	5	35	1.44
10442062--10442121	30	2.0	30	83	3	75	41	0	38	20	1.52
10445731--10445954	110	2.0	110	91	1	360	36	16	17	28	1.93
10447533--10447649	57	2.0	58	83	1	146	29	14	5	50	1.64
10448514--10448550	8	4.5	8	96	3	65	27	0	0	72	0.84
10448409--10448839	131	3.3	131	100	0	862	45	0	9	43	1.41
10448645--10448681	8	4.5	8	96	3	65	27	0	0	72	0.84
10448776--10448812	8	4.5	8	96	3	65	27	0	0	72	0.84
10449160--10449217	29	2.0	29	80	12	66	31	1	25	41	1.66
10449284--10449323	19	2.0	20	90	4	64	52	2	10	35	1.48
10449720--10449770	18	2.9	17	80	11	59	47	0	17	35	1.48
10452023--10452173	75	2.0	75	98	0	293	33	5	10	49	1.62
10464057--10464084	12	2.3	12	100	0	56	35	21	17	25	1.95
10470817--10470843	12	2.2	12	100	0	54	7	0	7	85	0.75
10472868--10472984	61	1.9	61	89	0	180	50	5	0	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10474734--10475093	178	2.0	178	90	1	569	30	14	19	36	1.91
10477213--10477288	38	2.0	38	97	0	143	17	23	19	39	1.92
10480819--10480855	17	2.2	17	90	9	58	18	5	0	75	0.99
10488043--10488108	24	2.9	22	73	8	69	42	15	15	27	1.86
10490869--10491399	265	2.0	266	99	0	1055	45	5	9	39	1.60
10491384--10491408	9	2.8	9	100	0	50	20	0	0	80	0.72
10498733--10498793	29	2.1	29	100	0	122	40	21	21	16	1.91
10499296--10499321	2	13.0	2	100	0	52	0	50	0	50	1.00
10503593--10503653	27	2.3	27	85	0	77	11	14	39	34	1.82
10505797--10505836	20	2.0	20	100	0	80	30	10	10	50	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135