genome.fa.s8.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  76  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29770951--29771130	62	2.9	62	100	0	360	33	18	13	34	1.89
29790728--29790799	24	3.0	24	95	0	126	43	9	27	19	1.82
29790876--29790939	21	3.0	21	73	8	58	18	23	17	40	1.91
29790954--29790998	21	2.2	21	84	7	58	8	22	22	46	1.79
29794205--29794249	18	2.5	18	85	7	56	64	0	0	35	0.94
29794690--29794758	29	2.3	30	75	7	70	46	0	7	46	1.30
29805056--29805089	15	2.3	15	89	0	50	32	0	2	64	1.08
29808783--29808956	44	4.0	44	100	0	348	29	6	20	43	1.78
29810212--29810238	14	1.9	14	100	0	54	62	0	0	37	0.95
29810915--29810959	21	2.1	21	84	8	56	60	4	8	26	1.46
29811177--29811223	19	2.6	18	83	12	60	36	2	2	59	1.21
29811146--29811206	27	2.2	29	77	11	74	36	1	3	59	1.24
29811128--29811234	47	2.3	48	79	10	125	35	1	3	58	1.26
29811616--29811789	89	1.9	90	84	7	230	37	19	8	33	1.82
29811798--29811840	7	6.1	7	80	20	54	72	0	0	27	0.85
29811821--29811871	20	2.7	19	85	8	61	68	1	0	29	1.00
29811937--29811981	21	2.1	21	84	8	56	60	4	8	26	1.46
29812199--29812245	19	2.6	18	83	12	60	36	2	2	59	1.21
29812168--29812228	27	2.2	29	77	11	74	36	1	3	59	1.24
29812150--29812256	47	2.3	48	79	10	125	35	1	3	58	1.26
29812645--29812899	129	2.1	121	86	7	343	22	12	15	49	1.78
29812731--29812899	65	2.6	64	72	6	162	21	13	15	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29812705--29812897	64	3.0	63	71	8	165	21	13	16	48	1.80
29837609--29837740	60	2.2	59	82	4	149	28	34	7	29	1.85
29843626--29843659	16	2.1	16	88	5	50	47	0	5	47	1.26
29844386--29844567	92	2.0	92	96	0	337	30	16	22	30	1.96
29849096--29849133	16	2.4	17	86	8	53	50	0	5	44	1.24
29851856--29851888	7	4.6	7	92	7	57	48	0	0	51	1.00
29857588--29857617	12	2.6	12	94	5	53	76	0	23	0	0.78
29862528--29862603	29	2.6	29	82	4	89	47	13	14	25	1.80
29872539--29872596	19	3.1	19	78	11	57	58	6	0	34	1.25
29872559--29872596	20	1.9	19	89	5	58	57	7	0	34	1.28
29872587--29872634	19	2.6	19	90	3	71	56	2	0	41	1.11
29883025--29883057	3	11.0	3	100	0	66	33	0	33	33	1.58
29884122--29884167	24	1.9	24	90	0	74	36	2	4	56	1.31
29884197--29884326	53	2.5	51	80	13	131	29	2	4	63	1.26
29894078--29894109	16	2.0	16	93	0	55	18	0	3	78	0.89
29894297--29894327	3	10.7	3	93	6	55	70	0	0	29	0.87
29894295--29894327	17	1.9	17	100	0	66	72	0	0	27	0.85
29894300--29894329	14	2.1	14	100	0	60	73	0	0	26	0.84
29894308--29894528	68	3.1	69	85	9	288	46	10	5	37	1.61
29894439--29894472	16	2.1	16	94	0	59	58	14	0	26	1.36
29894547--29894588	16	2.6	16	92	0	66	42	7	2	47	1.43
29895506--29895545	19	2.1	19	86	9	55	32	5	0	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29895529--29895585	26	2.2	26	84	6	71	43	0	3	52	1.18
29897654--29897697	22	2.0	22	90	0	70	29	34	13	22	1.93
29913190--29913239	22	2.2	22	85	3	64	54	0	2	44	1.11
29913781--29913841	23	2.6	22	82	7	59	49	0	1	49	1.10
29914364--29914404	21	1.9	22	85	5	57	43	2	0	53	1.13
29925561--29925590	2	15.0	2	100	0	60	50	0	50	0	1.00
29935102--29935139	16	2.3	17	81	4	51	71	0	2	26	1.00
29940452--29940480	1	29.0	1	100	0	58	100	0	0	0	0.00
29940430--29940479	14	3.2	16	86	8	59	86	8	2	4	0.78
29940840--29940872	14	2.4	14	90	5	50	39	6	0	54	1.25
29954832--29954963	67	2.0	67	83	4	167	31	16	28	23	1.96
29956106--29956168	3	21.0	3	100	0	126	66	0	33	0	0.92
29957521--29957584	22	3.0	22	83	4	85	39	20	3	37	1.68
29957513--29957578	21	3.2	21	83	8	82	45	16	3	34	1.63
29962950--29962991	20	2.1	20	86	0	57	47	0	7	45	1.30
29965046--29965074	15	1.9	15	100	0	58	48	6	6	37	1.57
29968168--29968911	370	2.0	371	92	1	1251	26	18	16	38	1.92
29973609--29973665	29	1.9	29	89	3	87	56	7	0	36	1.27
29973621--29973685	29	2.2	29	83	5	76	53	7	3	35	1.45
29982429--29982487	32	1.9	30	86	6	82	50	1	6	40	1.39
29985147--29985228	26	3.2	26	84	3	103	42	19	17	20	1.89
29985799--29985824	11	2.4	11	100	0	52	19	19	7	53	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29986947--29986975	8	3.6	8	100	0	58	24	0	0	75	0.80
29990459--29990497	13	3.2	13	79	20	57	46	5	5	43	1.48
29990552--29990578	2	13.5	2	100	0	54	51	0	0	48	1.00
29991666--29991722	29	1.9	29	89	3	87	56	7	0	36	1.27
29991678--29991742	29	2.2	29	83	5	76	53	7	3	35	1.45
29998416--29998445	16	1.9	16	93	6	53	46	0	0	53	1.00
30003646--30003693	25	1.9	25	95	0	87	37	4	12	45	1.61
30004423--30004461	20	2.0	20	89	0	60	15	28	0	56	1.40
30005340--30005366	7	3.9	7	100	0	54	14	11	44	29	1.80
30005698--30005869	43	4.0	43	97	0	317	45	4	22	28	1.70
30027489--30027524	16	2.2	17	90	5	56	41	11	0	47	1.39
30033926--30034015	3	30.0	3	73	12	69	31	3	5	60	1.36
30033926--30034015	21	4.3	20	75	8	81	31	3	5	60	1.36
30033926--30034026	21	5.1	19	75	15	64	32	2	4	59	1.34
30040071--30040109	19	2.1	19	95	0	69	43	0	5	51	1.24
30042769--30042938	85	2.0	85	95	2	306	39	7	4	49	1.49
30044528--30044561	16	2.1	16	100	0	68	29	23	5	41	1.78
30049451--30049483	15	2.1	16	88	5	50	15	24	0	60	1.35
30069601--30069859	69	3.5	72	80	10	285	45	6	8	40	1.59
30073314--30073398	9	9.4	9	83	5	109	40	21	11	27	1.88
30073314--30073398	27	3.1	27	89	3	127	40	21	11	27	1.88
30077604--30077632	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30084378--30084432	13	4.3	13	73	11	51	36	0	3	60	1.15
30085541--30085579	11	3.5	11	89	6	53	17	25	0	56	1.41
30087346--30087388	18	2.4	18	92	0	68	20	27	9	41	1.83
30090867--30091136	126	2.2	125	85	2	353	31	16	15	36	1.90
30091204--30091295	34	2.7	34	85	6	107	42	14	0	43	1.45
30091324--30091354	15	2.1	15	100	0	62	61	32	0	6	1.21
30092525--30092623	21	4.8	21	77	13	107	36	23	20	20	1.95
30092524--30092624	41	2.5	41	91	0	166	35	23	20	19	1.96
30096282--30096354	23	3.2	23	80	0	74	41	15	19	24	1.89
30101152--30101339	94	2.0	94	95	0	340	35	14	18	31	1.90
30105801--30105829	6	4.8	6	100	0	58	86	0	0	13	0.58
30106579--30106612	15	2.3	15	90	10	52	0	2	8	88	0.62
30106896--30106946	20	2.7	18	80	14	59	13	9	3	72	1.24
30107760--30107822	26	2.3	28	83	5	76	36	0	1	61	1.05
30107966--30108028	26	2.3	28	83	5	76	36	0	1	61	1.05
30110390--30110450	20	3.0	20	76	11	61	70	4	0	24	1.07
30110390--30110459	11	6.5	11	69	22	51	70	4	0	25	1.06
30125765--30125824	25	2.4	24	75	8	57	45	0	8	46	1.33
30132776--30132813	3	12.7	3	100	0	76	0	31	0	68	0.90
30138594--30138620	4	6.8	4	100	0	54	77	0	22	0	0.76
30139823--30139847	11	2.3	11	100	0	50	32	0	0	68	0.90
30146270--30146343	29	2.5	27	81	16	85	50	10	18	20	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30150845--30151100	127	2.0	128	99	0	505	41	7	8	43	1.62
30160631--30160697	34	2.0	34	85	5	93	38	0	2	58	1.14
30186258--30186355	41	2.4	41	82	0	115	30	5	16	47	1.68
30187436--30187503	21	3.3	20	78	10	57	35	8	1	54	1.41
30187606--30187670	9	7.0	9	77	6	67	33	4	0	61	1.16
30187606--30187670	19	3.5	19	82	2	69	33	4	0	61	1.16
30193291--30193350	17	3.7	17	72	22	58	76	0	13	10	1.01
30193301--30193351	13	3.6	13	75	25	50	76	0	11	11	1.02
30195295--30195320	10	2.6	10	100	0	52	19	0	23	57	1.40
30196795--30197039	50	4.8	50	83	6	246	27	19	27	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135