genome.fa.s8.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  48  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19379780--19380066	20	14.4	19	75	9	243	43	16	4	35	1.69
19380185--19380269	20	4.3	19	71	14	64	31	12	10	44	1.77
19380170--19380251	40	2.0	40	90	0	128	37	15	7	39	1.76
19380399--19380469	21	3.5	20	80	5	90	47	9	0	42	1.36
19387756--19387786	16	1.9	16	93	0	53	35	0	0	64	0.94
19388637--19388672	15	2.4	15	90	0	54	52	0	13	33	1.41
19392659--19392695	3	12.3	3	100	0	74	32	0	0	67	0.91
19409583--19409641	29	2.0	29	100	0	118	32	10	40	16	1.82
19415700--19415729	3	10.0	3	92	0	51	33	3	0	63	1.11
19428512--19428558	19	2.5	18	83	13	51	55	2	6	36	1.37
19429311--19429351	20	2.2	20	86	8	59	39	7	0	53	1.29
19437088--19437164	27	2.8	27	88	2	109	51	6	2	38	1.41
19437088--19437184	28	3.5	28	83	4	108	49	7	4	39	1.50
19444383--19444468	21	4.0	23	79	11	101	37	23	22	17	1.94
19444383--19444469	44	2.0	41	84	6	111	36	22	21	18	1.95
19445179--19445230	16	3.2	16	83	0	59	28	1	34	34	1.69
19445212--19445301	45	2.0	44	84	2	117	33	5	27	33	1.80
19449370--19449411	6	7.2	6	91	5	50	66	19	9	4	1.38
19449378--19449411	17	2.0	17	88	0	50	70	17	5	5	1.28
19449482--19449524	17	2.4	18	81	18	54	67	0	20	11	1.22
19450151--19450194	22	1.9	24	90	9	74	25	20	0	54	1.45
19450568--19450611	21	2.0	21	87	12	63	2	13	4	79	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19451889--19451928	18	2.2	19	90	4	64	57	17	2	22	1.52
19452687--19452744	21	2.7	22	76	17	59	32	0	5	62	1.18
19456863--19456897	16	2.2	16	90	10	54	45	0	0	54	0.99
19460808--19460842	18	2.0	17	88	5	52	82	2	11	2	0.88
19461611--19461675	30	2.1	31	85	2	87	41	9	10	38	1.72
19462699--19462736	19	2.1	18	85	14	51	42	2	2	52	1.29
19510699--19510751	21	2.5	21	96	0	97	28	41	9	20	1.83
19529063--19529124	27	2.3	26	75	10	63	53	1	8	37	1.40
19530010--19530058	26	2.0	24	88	8	71	55	0	2	42	1.11
19532640--19532776	46	3.0	46	89	5	192	35	9	25	29	1.87
19536919--19536956	19	2.0	19	89	0	58	60	2	5	31	1.33
19536945--19537551	303	2.0	304	99	0	1207	34	8	14	42	1.77
19550050--19550093	22	2.0	22	86	8	63	54	2	0	43	1.12
19558678--19558753	40	1.9	40	97	0	143	38	23	9	28	1.86
19561489--19561514	4	6.5	4	100	0	52	26	0	0	73	0.84
19561763--19561802	20	1.9	22	90	10	66	57	0	0	42	0.98
19561782--19561849	26	2.6	26	73	13	68	55	0	4	39	1.20
19567651--19567709	28	2.1	28	93	3	102	40	20	27	11	1.87
19574519--19574614	49	1.9	51	89	4	151	37	27	8	27	1.85
19589592--19589630	14	2.8	14	80	0	51	35	10	12	41	1.77
19589897--19590003	45	2.4	45	85	4	137	37	27	6	28	1.82
19592018--19592094	31	2.4	32	82	4	84	37	7	3	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19593226--19593348	61	2.0	62	82	4	151	39	4	13	42	1.64
19606174--19606204	4	7.8	4	100	0	62	0	22	25	51	1.48
19608760--19608788	2	14.5	2	100	0	58	0	48	0	51	1.00
19612870--19612911	2	21.0	2	100	0	84	50	50	0	0	1.00
19617650--19617710	21	3.0	20	76	7	52	60	8	1	29	1.35
19630241--19630292	27	2.0	28	82	17	69	44	0	1	53	1.11
19631428--19631545	61	2.0	60	83	8	150	40	2	14	42	1.59
19636733--19636758	2	13.0	2	100	0	52	0	50	0	50	1.00
19639384--19639408	10	2.5	10	100	0	50	12	20	60	8	1.57
19644727--19644769	2	21.5	2	95	0	77	51	2	0	46	1.13
19645228--19645261	17	1.9	18	88	5	52	41	0	0	58	0.98
19645607--19645691	43	2.0	43	97	0	161	45	10	10	32	1.73
19646301--19646640	130	2.7	125	89	2	484	29	17	23	29	1.97
19647313--19647350	11	3.4	11	88	3	58	44	2	34	18	1.64
19648801--19648858	9	6.4	9	89	0	71	46	24	5	24	1.72
19648800--19648858	18	3.3	18	90	0	91	47	23	5	23	1.71
19648962--19649008	18	2.6	18	82	0	67	14	0	44	40	1.46
19650355--19650410	15	3.9	15	74	4	53	35	1	0	62	1.06
19650356--19650410	22	2.6	21	80	5	65	36	1	0	61	1.06
19661277--19661310	14	2.5	14	85	4	52	76	0	23	0	0.79
19662575--19662629	27	2.0	29	82	13	71	50	10	1	36	1.48
19668527--19668594	33	2.1	33	97	0	127	25	11	23	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19668721--19668769	20	2.4	22	73	16	59	40	0	6	53	1.26
19670867--19671107	50	4.8	50	82	5	274	27	21	28	21	1.99
19672225--19672273	9	5.4	9	92	0	71	42	18	10	28	1.83
19672376--19672419	18	2.4	18	88	0	61	13	0	43	43	1.44
19675254--19675316	30	2.1	30	93	0	108	25	3	14	57	1.52
19675399--19675438	18	2.2	18	86	8	55	20	0	12	67	1.22
19675440--19675473	12	2.8	12	90	0	50	67	0	0	32	0.91
19677700--19677840	70	2.0	70	100	0	282	32	18	24	24	1.97
19679082--19679123	20	2.1	20	82	8	50	21	4	4	69	1.26
19679062--19679123	28	2.3	27	80	2	70	22	3	9	64	1.38
19679891--19680068	88	2.0	89	98	1	349	47	5	8	38	1.59
19720907--19720936	15	2.0	15	100	0	60	66	26	0	6	1.16
19726038--19726087	3	17.3	3	79	8	59	30	0	4	66	1.10
19726041--19726082	18	2.4	18	92	4	68	28	0	4	66	1.12
19728255--19728302	25	1.9	25	100	0	96	33	35	0	31	1.58
19739056--19739119	23	2.7	23	72	13	60	46	0	10	42	1.39
19739908--19739992	27	3.2	26	75	11	91	36	2	5	55	1.37
19739962--19739996	18	1.9	18	88	0	52	40	2	0	57	1.14
19739905--19740014	53	2.1	53	86	6	152	34	1	6	57	1.35
19744482--19744507	3	8.7	3	100	0	52	34	0	30	34	1.58
19749599--19749639	18	2.2	19	86	4	57	56	2	2	39	1.26
19749607--19749651	23	2.0	21	87	8	63	60	4	2	33	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19750797--19750839	13	3.2	13	87	9	52	74	2	6	16	1.14
19751880--19751967	23	4.0	23	77	7	92	18	19	20	42	1.90
19753664--19753716	27	2.0	27	85	7	72	58	1	1	37	1.20
19760917--19760943	3	9.0	3	100	0	54	66	0	0	33	0.92
19761198--19761242	4	11.2	4	80	0	54	42	0	0	57	0.98
19761199--19761242	8	5.5	8	97	0	79	40	0	0	59	0.98
19768873--19768937	31	2.1	31	94	0	112	27	16	10	44	1.81
19773398--19773428	7	4.4	7	100	0	62	25	16	0	58	1.38
19783133--19783195	23	2.7	23	80	9	58	61	3	1	33	1.21
19783149--19783195	22	2.1	23	84	4	60	61	4	2	31	1.27
19784237--19784278	15	2.9	15	78	3	50	45	0	0	54	0.99
19784329--19784383	22	2.5	22	80	19	69	43	1	30	23	1.64
19784329--19784382	11	4.8	12	80	15	62	42	1	31	24	1.65
19785843--19785893	20	2.5	20	78	6	50	54	1	3	39	1.30
19794350--19794389	9	4.3	9	84	6	53	17	5	0	77	0.94
19798290--19798323	13	2.6	13	90	9	52	73	8	8	8	1.25
19798766--19798795	14	2.1	14	93	0	51	36	10	43	10	1.72
19798807--19798871	33	2.0	33	90	6	105	40	3	43	13	1.60
19800627--19800834	114	1.8	113	87	4	312	41	8	7	42	1.62
19801835--19801894	31	1.9	31	89	0	93	48	15	8	28	1.73
19811617--19811652	16	2.1	16	90	10	54	27	0	8	63	1.23
19811675--19811720	22	2.0	22	83	8	56	36	2	2	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19811691--19811735	23	2.0	22	82	4	54	40	4	2	53	1.33
19811796--19811838	17	2.5	17	84	3	50	30	0	2	67	1.03
19812009--19812050	18	2.3	18	80	8	50	61	9	2	26	1.39
19818913--19819102	97	1.9	98	98	1	373	45	16	4	33	1.67
19823679--19823776	42	2.3	42	87	3	135	21	30	12	35	1.90
19839258--19839282	11	2.3	11	100	0	50	24	8	28	40	1.83
19849084--19849187	21	5.0	21	66	0	64	40	16	25	17	1.90
19849067--19849198	42	3.1	42	83	0	165	40	16	25	17	1.90
19854308--19854510	21	9.7	21	67	4	113	42	17	23	16	1.89
19854291--19854495	42	4.9	42	88	0	275	41	17	24	17	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135