genome.fa.s8.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  112  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41146754--41146808	25	2.2	25	81	12	60	49	5	1	43	1.36
41147234--41147264	9	3.3	9	95	4	53	41	0	0	58	0.98
41148413--41148444	15	2.1	15	94	0	55	68	9	6	15	1.36
41150857--41150892	17	2.2	16	90	5	54	80	0	19	0	0.71
41151608--41151677	31	2.3	31	87	0	95	52	10	4	32	1.54
41152025--41152082	21	2.9	20	77	10	57	50	1	6	41	1.39
41160118--41160243	28	4.5	28	89	2	182	30	25	12	31	1.93
41162709--41162800	37	2.5	37	81	8	107	31	22	1	44	1.60
41162709--41162801	36	2.5	35	80	13	98	31	23	1	44	1.61
41163015--41163044	3	10.0	3	100	0	60	66	0	0	33	0.92
41166436--41166766	165	2.0	166	99	0	655	47	9	9	33	1.69
41169211--41169257	17	2.8	17	80	6	51	34	4	0	61	1.15
41171370--41171432	28	2.2	29	91	8	103	47	14	15	22	1.81
41171567--41171756	93	2.0	93	82	7	226	49	16	8	24	1.75
41173713--41173767	22	2.5	23	85	5	78	45	18	3	32	1.67
41178828--41178885	22	2.7	21	82	10	80	44	18	3	32	1.67
41181607--41181657	24	2.1	24	92	0	84	21	35	13	29	1.92
41181697--41181759	24	2.6	24	100	0	126	28	28	15	26	1.96
41185745--41185769	13	1.9	13	100	0	50	32	8	20	40	1.81
41186680--41186732	24	2.2	24	86	0	70	52	9	3	33	1.52
41189634--41189675	21	2.0	21	85	4	57	59	2	7	30	1.37
41194942--41195058	58	2.0	59	85	6	157	43	17	18	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41196280--41196332	27	2.0	27	100	0	106	43	7	7	41	1.61
41198900--41198934	5	6.8	5	90	3	52	2	0	17	80	0.84
41204756--41204790	18	1.9	18	94	0	61	40	28	5	25	1.78
41209841--41209879	6	6.5	6	96	0	69	17	28	38	15	1.91
41209942--41209971	6	5.0	6	100	0	60	33	33	0	33	1.58
41216312--41216490	50	3.6	50	75	5	148	28	23	25	22	1.99
41217017--41217100	42	2.0	42	100	0	168	35	7	21	35	1.81
41222753--41222937	50	3.6	50	78	8	149	22	28	21	28	1.99
41225546--41225677	63	2.1	62	95	2	246	25	12	14	47	1.78
41234779--41235619	46	17.8	46	85	5	1007	33	25	14	26	1.95
41237121--41237187	13	5.4	12	81	10	73	0	17	1	80	0.79
41237138--41237185	17	2.9	16	77	20	53	0	18	2	79	0.84
41237121--41237199	38	2.1	39	80	7	90	3	16	1	78	0.96
41237565--41237598	7	4.9	7	92	0	59	8	0	2	88	0.62
41238607--41238643	13	2.8	13	91	0	65	21	5	40	32	1.76
41239816--41239840	9	2.8	9	100	0	50	88	0	0	12	0.53
41242063--41242091	15	2.0	15	93	6	51	55	6	13	24	1.63
41242353--41242443	39	2.2	43	79	16	102	59	5	5	29	1.43
41242366--41242443	39	1.9	42	85	12	110	56	6	5	32	1.47
41246628--41246658	6	5.2	6	92	0	53	64	0	0	35	0.94
41251500--41251537	17	2.3	17	86	4	51	52	0	0	47	1.00
41253673--41253728	22	2.5	23	82	2	69	51	1	1	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41253704--41253743	16	2.5	16	91	0	62	47	2	7	42	1.45
41253796--41253846	25	2.0	27	88	7	79	60	1	0	37	1.08
41256754--41256789	18	2.0	18	89	10	56	66	2	0	30	1.06
41256769--41256809	13	3.2	13	77	19	50	73	0	0	26	0.84
41256741--41256797	20	3.0	20	73	23	59	64	1	1	31	1.13
41256769--41256808	12	3.2	12	85	3	53	72	0	0	27	0.85
41259558--41259660	41	2.5	41	85	0	134	22	21	24	32	1.98
41259558--41259677	41	2.9	41	83	0	123	21	21	25	31	1.98
41263057--41263179	42	2.9	41	75	4	120	17	26	17	39	1.91
41267350--41267825	246	1.9	246	87	0	691	26	26	23	23	2.00
41268615--41268726	42	2.7	42	81	1	118	47	17	20	14	1.82
41268625--41268741	21	5.6	21	68	12	62	44	17	20	17	1.87
41268661--41268744	42	2.0	42	83	4	107	45	16	20	17	1.86
41270570--41270627	3	19.3	3	100	0	116	32	0	0	67	0.91
41270755--41270797	22	2.0	22	90	0	68	44	27	18	9	1.80
41272822--41272861	9	4.3	9	83	3	53	55	2	2	40	1.27
41273066--41273701	318	2.0	318	99	0	1247	30	14	19	35	1.92
41273646--41273699	20	2.9	18	77	20	58	44	3	3	48	1.38
41273625--41273713	25	3.7	24	75	13	83	43	3	4	48	1.39
41273674--41273705	16	1.9	16	93	6	55	46	3	0	50	1.17
41276343--41276379	2	18.5	2	100	0	74	48	0	0	51	1.00
41285466--41285509	13	3.6	13	76	17	58	15	18	0	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41285462--41285507	23	2.0	23	100	0	92	17	17	0	65	1.28
41287978--41288036	24	2.5	24	85	0	82	50	0	22	27	1.49
41288821--41288869	22	2.3	22	89	3	73	18	0	8	73	1.07
41299194--41299251	21	2.7	21	84	12	66	29	1	5	63	1.25
41299188--41299252	28	2.3	29	84	5	80	30	1	4	63	1.24
41300346--41300388	19	2.3	19	84	8	52	32	2	0	65	1.06
41303527--41303561	15	2.3	15	95	0	61	14	8	42	34	1.76
41304089--41304520	132	3.3	132	88	1	627	26	22	19	31	1.98
41304523--41305180	88	7.5	88	91	1	1005	27	24	19	27	1.99
41304089--41304601	264	1.9	264	81	7	605	26	23	18	31	1.98
41305576--41305687	55	2.0	55	87	3	163	33	13	11	41	1.81
41306314--41306633	106	3.0	106	80	1	381	32	18	18	31	1.94
41307121--41307178	31	1.9	30	85	3	80	74	3	5	17	1.15
41311553--41311637	27	3.1	27	79	3	100	22	36	22	18	1.95
41313318--41313376	31	1.9	31	89	0	91	30	11	15	42	1.83
41315424--41315705	140	2.0	140	100	0	564	24	11	28	35	1.90
41318615--41318655	18	2.3	18	87	4	57	36	9	2	51	1.48
41323823--41323847	3	8.3	3	100	0	50	36	0	32	32	1.58
41339504--41339880	186	2.0	187	99	0	747	44	6	5	42	1.53
41340454--41340513	10	6.0	10	78	7	68	68	0	3	28	1.05
41340454--41340543	21	4.4	21	80	9	96	65	0	2	32	1.05
41340459--41340543	11	8.2	11	71	17	74	68	0	2	29	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41340735--41340799	19	3.4	18	74	16	60	29	7	1	61	1.33
41343370--41343559	89	2.2	87	85	7	246	38	25	8	27	1.85
41348793--41348957	47	3.5	46	84	1	177	25	24	15	34	1.94
41352079--41352130	24	2.2	24	85	0	68	50	7	3	38	1.50
41356423--41356473	24	2.2	24	89	3	77	49	5	3	41	1.45
41357340--41357365	2	13.0	2	100	0	52	50	50	0	0	1.00
41357365--41357389	2	12.5	2	100	0	50	52	0	0	48	1.00
41359490--41359552	31	2.0	31	96	0	117	22	19	11	47	1.80
41359595--41359623	14	2.0	15	93	6	51	51	20	0	27	1.47
41365756--41365819	31	2.1	31	82	5	76	40	9	7	42	1.66
41365866--41365897	2	17.0	2	87	12	50	53	0	0	46	1.00
41365866--41365897	11	2.8	12	86	13	50	53	0	0	46	1.00
41370299--41370355	14	3.9	14	75	15	53	31	8	1	57	1.39
41373206--41373243	20	1.9	20	84	10	51	57	5	7	28	1.49
41374478--41375289	167	4.9	164	78	13	773	22	13	20	44	1.85
41378681--41378757	3	25.7	3	100	0	154	32	0	0	67	0.91
41382717--41382759	21	2.0	21	90	0	68	51	13	11	23	1.74
41383068--41383106	16	2.4	17	87	8	55	64	0	5	30	1.15
41405034--41405615	50	11.6	50	74	2	497	22	19	23	35	1.96
41405034--41405651	100	6.2	100	87	1	819	22	19	24	34	1.96
41409681--41409770	47	1.9	47	88	0	135	16	18	18	45	1.86
41420411--41420454	14	3.2	13	81	9	52	9	0	40	50	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41420425--41420450	7	3.7	7	100	0	52	11	0	42	46	1.40
41420408--41420450	21	2.0	21	82	8	52	11	0	39	48	1.40
41420668--41420836	46	3.6	46	70	13	132	44	2	14	37	1.61
41420573--41420881	86	3.3	92	81	8	328	42	3	16	37	1.64
41420924--41421346	126	3.4	126	93	0	722	31	19	22	26	1.98
41423627--41423714	41	2.1	41	89	0	131	29	20	20	29	1.98
41423640--41423726	41	2.1	41	86	0	120	28	21	21	27	1.99
41425921--41426251	72	4.6	70	79	7	281	23	16	24	35	1.95
41425988--41426251	142	1.8	144	83	1	352	23	16	24	35	1.95
41429116--41429170	27	2.0	27	100	0	110	21	14	29	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135