genome.fa.s8.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  64  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25858060--25858115	29	1.9	30	82	7	71	51	0	3	44	1.18
25859884--25859939	29	1.9	30	82	7	71	51	0	3	44	1.18
25863279--25863307	13	2.2	13	100	0	58	27	13	0	58	1.36
25867166--25867285	40	3.0	40	96	0	222	50	15	19	15	1.79
25869665--25869796	50	2.5	54	73	11	130	26	18	28	25	1.98
25870109--25870183	16	4.8	15	75	18	73	50	1	29	18	1.55
25870117--25870146	14	2.1	14	100	0	60	50	0	30	20	1.49
25870131--25870200	32	2.2	32	97	0	131	51	1	30	17	1.54
25874218--25874255	13	2.7	14	84	12	51	39	7	0	52	1.31
25875655--25875682	9	3.1	9	100	0	56	57	10	0	32	1.33
25876678--25876721	23	1.9	23	86	9	63	43	9	2	45	1.48
25881296--25881620	161	2.0	162	99	0	643	36	18	16	28	1.93
25884573--25884620	22	2.2	22	92	3	80	6	8	22	62	1.46
25884584--25884622	11	3.5	11	78	0	51	7	12	20	58	1.58
25893446--25893477	12	2.6	13	90	9	50	46	3	0	50	1.17
25894214--25894255	15	2.8	15	85	7	50	57	2	9	30	1.44
25898955--25898995	21	2.0	21	85	0	55	41	9	12	36	1.76
25902093--25902133	15	2.7	15	85	14	57	73	2	7	17	1.17
25906260--25906919	327	2.0	330	82	5	814	30	20	18	30	1.97
25910847--25910896	24	2.1	24	100	0	100	38	22	20	20	1.94
25916381--25916412	15	2.1	15	94	0	55	15	3	53	28	1.57
25922486--25922576	45	2.0	46	97	2	175	42	6	15	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25929795--25929958	29	5.6	29	76	11	156	21	26	14	37	1.91
25929853--25929979	58	2.2	57	90	1	191	22	24	12	40	1.89
25934278--25934321	14	3.1	15	90	6	65	0	29	4	65	1.12
25936479--25936508	13	2.3	13	94	0	51	46	36	0	16	1.47
25945308--25945558	27	9.3	27	80	1	270	19	15	21	43	1.87
25949553--25949600	17	2.8	16	78	12	51	22	0	4	72	1.01
25959769--25959830	30	2.1	30	100	0	124	40	33	3	22	1.70
25974786--25974945	32	5.0	32	84	6	148	36	24	20	18	1.94
25974989--25975052	27	2.4	27	85	12	80	31	23	25	20	1.98
25975117--25975185	24	2.9	23	80	6	84	46	24	8	20	1.79
25975220--25975501	27	10.5	27	85	1	318	25	21	17	34	1.95
25975508--25975593	26	3.3	26	78	15	88	23	18	18	39	1.92
25975478--25975592	53	2.2	53	79	14	123	22	16	20	40	1.91
25981338--25981380	21	2.0	21	82	8	52	20	18	18	41	1.90
25981761--25981791	4	8.0	4	92	7	55	0	0	22	77	0.77
25987058--25987134	32	2.4	32	84	0	109	14	10	49	25	1.75
25989698--25989868	32	5.4	32	76	7	152	40	18	18	22	1.91
25990040--25990145	24	4.4	24	86	2	115	48	23	5	22	1.72
25990194--25990473	27	10.3	27	78	5	235	20	17	18	43	1.88
25990278--25990460	81	2.3	80	88	7	264	20	18	16	43	1.88
25992556--25992588	15	2.2	15	94	0	57	36	15	9	39	1.79
25995429--25995460	13	2.5	13	94	0	55	28	28	34	9	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26005166--26005201	17	2.1	17	89	0	54	19	27	33	19	1.96
26007505--26007542	19	2.0	19	85	10	51	21	42	0	36	1.53
26013006--26013087	3	28.3	3	76	7	80	30	2	3	63	1.24
26013103--26013197	31	3.4	27	69	17	77	31	9	6	52	1.59
26017733--26017791	6	9.7	6	83	3	64	71	13	1	13	1.23
26019445--26019706	87	3.0	87	88	3	384	29	23	24	22	1.99
26019885--26020010	44	2.8	45	80	7	134	28	19	26	25	1.99
26019886--26020093	44	4.7	42	72	11	116	28	18	25	27	1.98
26022641--26022764	47	2.6	47	79	3	133	28	19	30	21	1.98
26022641--26022816	48	3.7	46	75	4	138	28	19	28	23	1.98
26029682--26029886	48	4.3	48	77	5	200	27	19	29	22	1.98
26057932--26057972	15	2.6	16	84	11	57	36	4	4	53	1.44
26061327--26061357	15	2.1	15	93	0	53	58	6	9	25	1.54
26065007--26065071	27	2.4	26	77	10	67	30	23	24	21	1.99
26065239--26065290	22	2.4	22	80	0	59	44	19	19	17	1.87
26065302--26065515	32	6.7	32	76	6	193	36	23	21	18	1.95
26065307--26065515	95	2.2	96	81	6	253	36	23	21	17	1.94
26065518--26065571	26	2.1	26	85	0	72	38	24	22	14	1.91
26065692--26065744	24	2.2	23	77	9	61	47	22	7	22	1.76
26065802--26066059	27	9.6	26	80	5	264	25	20	18	35	1.95
26065808--26066314	54	9.2	53	80	6	456	25	19	18	36	1.95
26066060--26066314	27	9.4	27	83	0	294	25	20	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26065940--26066179	120	2.0	120	85	3	322	25	19	18	36	1.94
26065817--26066391	255	2.3	255	96	0	1062	25	19	18	36	1.94
26066144--26066469	174	1.9	173	83	4	433	23	19	19	37	1.95
26066315--26066444	27	4.9	27	83	1	145	20	18	21	39	1.93
26066249--26066379	66	2.0	66	92	0	217	24	19	19	35	1.95
26066315--26066523	54	3.9	54	80	7	187	22	19	19	38	1.93
26066341--26066523	27	6.8	27	84	2	156	21	20	20	37	1.94
26066351--26066522	53	3.2	54	81	5	161	22	20	19	38	1.94
26066381--26066537	27	5.9	27	82	8	160	22	20	18	38	1.93
26067742--26067986	127	1.9	127	100	0	490	30	27	11	31	1.91
26069241--26069348	32	3.4	32	74	5	119	37	23	19	19	1.94
26069215--26069444	32	7.2	32	69	11	114	40	20	18	20	1.92
26069275--26069449	96	1.8	96	81	7	221	40	21	17	20	1.91
26069240--26069452	64	3.3	64	74	7	209	39	21	18	19	1.92
26069625--26069702	24	3.3	23	80	5	84	47	23	7	21	1.76
26069739--26070056	27	11.8	27	87	2	406	23	22	21	33	1.97
26069804--26070128	27	12.1	27	84	7	206	21	21	21	35	1.96
26069774--26070109	81	4.2	81	80	8	269	22	22	20	34	1.97
26071743--26071922	57	3.2	57	83	6	231	47	15	14	22	1.82
26080369--26080432	30	2.1	30	91	0	101	20	29	20	29	1.97
26080664--26081110	224	2.0	224	95	0	795	33	13	17	35	1.89
26094492--26094530	18	2.1	19	85	4	53	28	12	15	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26115314--26115355	20	2.1	20	82	8	50	11	2	4	80	0.95
26115302--26115362	6	9.8	6	74	13	52	14	3	3	78	1.00
26122162--26122190	12	2.3	13	94	5	51	20	6	6	65	1.40
26129418--26129634	72	3.0	71	77	5	220	34	20	15	29	1.94
26133136--26133181	23	1.9	25	86	8	69	45	0	4	50	1.21
26133136--26133189	23	2.2	24	83	9	65	46	0	3	50	1.19
26134143--26134188	23	1.9	25	86	8	69	45	0	4	50	1.21
26134143--26134196	23	2.2	24	83	9	65	46	0	3	50	1.19
26136257--26136423	27	6.1	27	84	1	172	37	19	10	32	1.86
26136261--26136424	54	3.0	54	84	1	202	37	18	10	33	1.85
26136272--26136423	81	1.9	82	83	4	200	38	17	10	33	1.84
26136637--26136696	27	2.2	27	85	5	77	18	23	21	36	1.95
26145950--26146012	25	2.5	25	84	5	74	33	15	11	39	1.83
26146343--26146386	18	2.5	17	78	10	52	40	15	2	40	1.60
26149357--26149615	85	3.0	85	82	3	261	32	13	13	40	1.82
26149613--26149846	79	3.0	78	80	6	251	31	16	11	41	1.83
26149854--26150008	82	1.9	84	83	5	208	35	9	10	44	1.71
26149854--26150132	84	3.3	84	82	6	302	34	9	10	45	1.71
26149933--26150159	84	2.7	82	82	6	278	33	9	9	47	1.69
26162454--26163102	328	2.0	326	86	6	911	47	8	8	35	1.65
26168243--26168304	23	2.5	24	76	10	63	66	6	9	17	1.42
26170162--26170652	131	3.7	131	93	1	815	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26170325--26170696	44	8.5	45	69	17	174	26	24	19	29	1.98
26170162--26170652	263	1.9	262	91	3	817	26	23	19	30	1.98
26170741--26170918	50	3.5	51	69	4	164	27	26	19	26	1.99
26170794--26170971	50	3.6	50	68	3	151	24	22	22	30	1.99
26170892--26171989	50	22.1	49	64	7	270	22	21	23	32	1.98
26170725--26171969	99	12.5	99	89	1	1512	23	21	23	31	1.98
26170725--26171969	296	4.2	297	85	2	1487	23	21	23	31	1.98
26170725--26171969	197	6.3	198	85	1	1503	23	21	23	31	1.98
26172067--26172204	44	3.1	43	66	19	104	23	21	26	28	1.99
26171988--26172571	88	6.6	88	92	0	929	24	23	23	28	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135