Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  84  of  135  ( 16172 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32517867--32517925
31
1.9
30
83
10
75
23
8
0
67
1.17
32521305--32521343
15
2.6
15
91
0
60
33
35
15
15
1.89
32523398--32523439
21
2.0
22
85
4
59
61
28
4
4
1.36
32527232--32527258
2
13.5
2
100
0
54
48
0
0
51
1.00
32530654--32530703
20
2.5
21
83
9
68
50
0
2
48
1.12
32530753--32530795
3
14.7
3
85
4
61
34
4
0
60
1.17
32533306--32533428
64
1.9
65
83
5
160
52
6
8
32
1.56
32543238--32543406
30
5.7
30
78
8
159
33
21
5
39
1.76
32543245--32543386
29
4.8
27
75
14
86
36
22
2
38
1.69
32543245--32543357
59
1.9
59
85
7
158
38
22
2
37
1.68
32543881--32543941
4
16.5
4
83
16
71
73
0
26
0
0.83
32543882--32543941
23
2.8
22
87
10
88
73
0
26
0
0.84
32543882--32543943
7
8.6
7
84
12
81
72
0
27
0
0.85
32544253--32544297
23
2.0
22
91
4
72
80
0
20
0
0.72
32544462--32544499
5
7.8
5
82
5
51
26
0
0
73
0.83
32544760--32544949
17
10.7
17
69
13
89
33
13
8
44
1.74
32544760--32545070
18
17.3
18
66
19
89
31
11
10
45
1.75
32544826--32544865
16
2.4
17
87
4
55
47
10
2
40
1.50
32544843--32544899
16
3.4
16
75
15
53
36
12
8
42
1.74
32544844--32544936
34
2.7
33
86
8
116
31
15
8
45
1.76
32544945--32544988
20
2.1
21
88
12
65
52
11
11
25
1.70
32544856--32545017
34
4.6
33
70
14
85
32
14
11
42
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32545048--32545119
37
1.9
38
85
2
101
38
6
9
44
1.64
32544995--32545114
18
6.7
18
63
14
50
30
8
11
49
1.69
32548039--32548065
12
2.2
12
100
0
54
59
25
7
7
1.51
32548497--32548546
4
11.8
4
83
12
64
50
0
2
48
1.12
32548497--32548547
13
3.9
13
85
7
68
49
0
1
49
1.12
32548537--32548569
17
1.9
18
88
11
52
42
12
0
45
1.41
32548665--32548717
14
3.8
13
78
9
52
39
3
0
56
1.17
32555004--32555064
19
3.2
19
100
0
122
9
21
54
14
1.69
32569437--32569508
14
5.3
14
77
9
51
38
0
8
52
1.32
32569457--32569513
21
2.8
20
80
17
71
40
0
8
50
1.33
32570810--32570848
20
1.9
21
85
15
55
48
5
7
38
1.54
32575431--32576106
307
2.2
307
89
6
1028
52
6
11
30
1.62
32578165--32578332
83
2.1
79
87
6
250
39
10
9
40
1.73
32581237--32581401
37
4.3
38
73
15
119
49
12
6
32
1.64
32581251--32581432
41
4.6
40
67
16
110
47
12
6
34
1.65
32583082--32583153
30
2.4
30
80
0
90
38
12
12
36
1.81
32583082--32583194
30
3.8
27
73
14
73
40
11
10
37
1.76
32585890--32585923
15
2.3
15
89
0
50
79
5
14
0
0.91
32586109--32586561
245
1.8
245
97
0
854
18
15
35
30
1.92
32588516--32588561
14
3.4
14
84
3
58
30
2
10
56
1.46
32589611--32589656
14
3.4
14
84
3
58
30
2
10
56
1.46
32590699--32590751
24
2.3
24
90
6
83
75
9
15
0
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32592299--32592427
44
3.0
43
84
8
147
27
24
17
30
1.97
32592361--32592613
94
2.7
94
87
1
355
29
22
19
28
1.98
32592461--32592714
138
1.8
138
81
5
316
29
20
19
31
1.97
32594615--32594647
15
2.2
15
89
10
50
69
0
21
9
1.15
32597182--32597233
26
2.0
26
100
0
104
42
15
19
23
1.89
32597890--32597952
19
3.3
19
66
25
51
50
1
7
39
1.41
32599780--32599842
19
3.3
19
66
25
51
50
1
7
39
1.41
32601696--32601750
21
2.6
21
80
8
67
25
40
20
14
1.90
32618713--32618773
9
6.6
9
78
10
61
81
3
6
8
0.95
32620733--32621283
82
6.7
82
97
0
1050
21
20
26
31
1.98
32621390--32621508
44
2.7
46
80
11
147
26
21
23
29
1.99
32621370--32621509
45
3.1
45
76
11
153
25
22
22
30
1.99
32621460--32622116
86
7.6
86
93
0
1071
25
23
24
27
2.00
32621849--32622066
44
5.0
43
65
18
135
24
23
25
26
2.00
32622918--32622962
19
2.3
20
88
3
65
0
11
4
84
0.76
32622918--32622950
10
3.4
10
87
4
50
0
9
3
87
0.63
32622918--32622960
9
4.6
9
82
8
50
0
9
4
86
0.71
32622918--32622961
13
3.4
13
83
0
52
0
9
4
86
0.70
32623380--32623431
16
3.4
16
89
5
72
9
5
0
84
0.77
32623394--32623431
8
4.8
8
93
0
67
10
2
0
86
0.66
32623380--32623437
15
3.9
15
80
10
57
8
6
1
82
0.90
32623394--32623437
16
2.8
16
86
6
54
9
4
2
84
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32623425--32623505
23
3.8
20
73
20
67
1
12
8
77
1.04
32623394--32623506
10
11.9
9
69
16
59
4
9
6
79
1.04
32623449--32623514
31
2.2
30
83
8
80
1
10
7
80
0.97
32624791--32624915
62
2.0
62
92
3
207
32
5
20
40
1.76
32640278--32640314
9
4.1
9
85
0
56
32
10
10
45
1.74
32642303--32642473
87
1.9
88
97
2
326
28
10
9
50
1.69
32644562--32644586
13
1.9
13
100
0
50
16
8
16
60
1.58
32647757--32647823
3
22.3
3
87
0
53
19
0
68
11
1.20
32647765--32647831
33
2.0
33
91
0
107
14
0
70
14
1.18
32647757--32647831
6
13.0
6
83
8
57
17
0
69
13
1.19
32651887--32651917
16
1.9
16
93
0
53
41
3
0
54
1.16
32667536--32667600
25
2.8
24
76
15
66
49
0
4
46
1.22
32669452--32669485
15
2.2
16
89
5
52
70
0
2
26
1.01
32670147--32670235
25
3.1
30
82
15
125
25
25
6
41
1.80
32670157--32670203
15
3.1
15
70
11
51
27
23
8
40
1.83
32670410--32670497
28
3.3
27
69
15
83
44
7
2
45
1.45
32671704--32671742
19
2.1
19
100
0
78
15
46
0
38
1.46
32672106--32672135
15
2.0
15
93
0
51
56
0
0
43
0.99
32685934--32687175
619
2.0
619
99
0
2475
36
8
12
41
1.74
32687666--32687710
22
2.0
22
83
8
56
62
0
0
37
0.96
32696082--32696200
57
2.1
57
85
6
161
27
21
7
42
1.80
32699415--32699599
92
2.0
93
98
1
363
52
12
9
24
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32702127--32702164
18
2.2
17
90
4
58
44
10
0
44
1.38
32702519--32702562
15
3.0
15
76
3
54
27
18
6
47
1.73
32707364--32707394
6
5.2
6
100
0
62
32
19
16
32
1.94
32709558--32709724
80
2.1
81
97
1
318
35
5
10
47
1.63
32709558--32709749
80
2.4
80
88
4
253
36
6
9
46
1.62
32737143--32737176
16
2.2
15
89
5
50
35
0
0
64
0.94
32741936--32742094
76
2.1
78
97
2
304
32
1
10
55
1.44
32752208--32752281
33
2.3
33
85
2
96
33
6
16
43
1.74
32757126--32757179
10
5.7
9
80
6
54
64
0
5
29
1.16
32757147--32757217
30
2.4
29
81
9
81
63
0
4
32
1.14
32757156--32757189
11
3.1
11
86
0
50
64
0
0
35
0.94
32757119--32757180
20
3.2
19
77
9
63
66
0
4
29
1.12
32757389--32757563
90
2.0
88
81
4
208
34
10
18
37
1.85
32757632--32757680
21
2.3
22
79
13
57
57
0
4
38
1.18
32764836--32764876
20
2.0
21
85
4
57
43
17
7
31
1.76
32765710--32765761
24
2.1
25
82
3
61
28
3
9
57
1.48
32771435--32771484
26
2.0
26
84
4
66
50
0
4
46
1.20
32771537--32771561
6
4.2
6
100
0
50
84
0
16
0
0.63
32775613--32775642
14
2.1
14
93
0
51
40
10
6
43
1.64
32776259--32776290
16
2.1
16
94
5
57
50
0
6
43
1.27
32776796--32776845
26
2.0
26
84
4
66
50
0
4
46
1.20
32778180--32778319
62
2.2
62
77
8
151
24
23
27
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32784160--32784229
33
2.1
33
82
10
81
30
10
7
52
1.61
32790948--32792864
958
2.0
958
100
0
3834
27
14
20
36
1.92
32797857--32797881
6
4.2
6
100
0
50
52
0
0
48
1.00
32800847--32801409
3
187.7
3
100
0
1126
66
0
0
33
0.92
32802792--32802854
31
2.0
32
96
3
119
42
15
9
31
1.79
32805451--32805512
31
2.0
32
96
3
117
43
14
9
32
1.78
32810800--32810842
11
3.8
11
80
17
52
65
2
2
30
1.18
32825697--32825781
27
3.2
26
88
8
118
21
20
36
22
1.95
32825843--32825889
18
2.5
20
79
10
62
63
2
34
0
1.06
32825839--32825892
22
2.4
23
84
12
76
64
1
33
0
1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135