genome.fa.s8.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  85  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32828646--32828703	22	2.9	19	71	14	53	34	1	12	51	1.49
32828656--32828730	22	3.2	22	77	17	78	29	1	13	56	1.46
32828646--32828725	19	4.6	19	69	23	68	33	1	12	52	1.47
32828777--32829033	27	9.5	27	98	0	469	22	37	24	15	1.93
32838454--32838500	22	2.1	23	84	7	62	53	0	4	42	1.20
32842768--32842824	30	1.9	30	82	7	71	26	8	21	43	1.81
32844630--32844665	5	7.2	5	100	0	72	61	0	0	38	0.96
32847156--32847223	33	2.0	34	97	2	129	19	16	23	41	1.90
32850963--32851034	7	9.4	8	74	24	50	48	2	1	47	1.25
32850962--32851024	25	2.5	25	92	5	101	47	3	3	46	1.34
32851421--32851475	22	2.5	22	88	2	76	45	40	0	14	1.45
32851429--32851462	14	2.3	15	90	5	52	44	41	0	14	1.45
32851421--32851484	22	3.0	21	81	6	74	45	40	0	14	1.44
32851922--32852374	114	4.0	111	73	11	353	28	22	17	31	1.97
32851929--32852359	229	1.9	227	83	8	561	28	22	17	31	1.97
32852326--32852487	75	2.2	75	81	0	189	28	22	15	33	1.95
32852399--32852760	113	3.2	113	99	0	706	26	20	15	38	1.92
32852211--32852578	188	2.0	187	81	5	429	26	21	16	35	1.94
32853621--32853691	26	2.9	25	71	14	67	54	0	8	36	1.31
32853754--32853793	21	1.9	21	89	0	62	65	5	7	22	1.38
32853842--32853877	12	3.0	12	91	0	63	55	0	11	33	1.35
32864003--32864074	36	2.0	36	97	0	135	31	23	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32867473--32867498	3	8.7	3	100	0	52	30	0	0	69	0.89
32870165--32870516	45	7.9	45	83	3	390	28	22	16	32	1.95
32877117--32877205	41	2.2	40	95	2	160	40	35	7	15	1.77
32877127--32877223	41	2.4	41	87	5	135	45	36	4	14	1.64
32877564--32877605	21	2.0	21	90	4	66	61	11	9	16	1.55
32897579--32897919	169	2.0	169	97	0	637	19	21	18	40	1.92
32905429--32905604	70	2.5	70	98	0	334	27	25	11	35	1.91
32912435--32912472	18	2.1	19	90	5	60	36	21	31	10	1.87
32916170--32916212	20	2.2	20	91	0	68	67	0	0	32	0.91
32916652--32916717	29	2.2	30	81	5	80	37	0	4	57	1.19
32916837--32916907	29	2.3	30	83	7	81	19	18	14	47	1.82
32918798--32919024	33	6.8	32	65	19	90	27	22	15	34	1.94
32918846--32918957	35	3.3	35	68	14	115	25	23	16	34	1.95
32918830--32918990	68	2.4	66	97	0	259	24	23	16	34	1.95
32923792--32923838	15	3.1	15	81	3	58	36	14	0	48	1.44
32923798--32923851	15	3.4	16	80	10	58	31	18	1	48	1.59
32925523--32925764	50	4.7	50	86	3	286	21	29	22	26	1.99
32927439--32927477	19	2.0	20	90	5	62	33	28	15	23	1.95
32930186--32930240	26	2.1	26	83	10	67	40	21	10	27	1.87
32932817--32932987	43	4.0	42	77	11	170	23	17	26	32	1.97
32932830--32932991	84	1.9	84	83	5	211	23	17	27	31	1.97
32933148--32933179	16	1.9	17	93	6	57	40	0	21	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32934603--32934777	42	4.2	42	99	0	343	18	21	11	48	1.79
32938935--32938991	19	3.1	19	82	7	64	57	8	0	33	1.29
32942369--32942398	11	2.6	12	89	10	53	10	10	10	70	1.36
32945394--32945432	19	2.0	21	85	10	55	30	7	17	43	1.77
32948213--32948242	7	4.3	7	95	0	51	16	53	0	30	1.44
32957798--32957864	9	7.4	9	87	0	89	25	7	22	44	1.78
32957798--32957865	27	2.5	27	92	0	109	25	7	22	45	1.77
32963859--32963959	50	2.0	51	98	1	195	37	17	18	25	1.93
32964954--32965002	16	3.1	16	90	0	71	36	2	34	26	1.68
32965171--32965212	15	2.7	16	82	14	52	52	2	0	45	1.13
32965180--32965221	15	2.9	15	82	10	52	52	0	0	47	1.00
32970257--32970388	9	15.7	9	73	17	63	29	0	18	51	1.51
32970265--32971154	44	20.4	44	73	20	353	29	1	17	51	1.53
32970454--32971117	140	4.8	140	82	10	761	29	1	17	52	1.52
32971141--32971278	9	16.0	9	70	17	96	33	2	18	45	1.62
32970325--32971251	25	39.2	25	73	16	351	30	1	17	51	1.53
32970265--32971272	16	65.9	16	69	20	521	30	1	17	50	1.53
32971199--32971271	20	4.1	19	73	22	77	31	1	16	50	1.53
32971273--32971302	12	2.5	12	88	0	51	40	6	10	43	1.64
32971414--32971459	23	2.0	23	82	0	56	54	2	4	39	1.32
32971698--32972143	153	3.0	151	90	3	666	31	8	6	53	1.58
32978356--32978381	13	2.0	13	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32978505--32978571	3	22.7	3	92	3	109	67	1	1	29	1.09
32984664--32984706	13	3.4	12	83	6	50	62	11	2	23	1.40
32984696--32984730	8	4.4	8	100	0	70	54	11	11	22	1.68
32992177--32992389	91	2.3	91	91	1	338	46	2	4	46	1.37
32992177--32992310	44	3.0	45	68	16	123	45	2	5	46	1.40
32992222--32992364	44	3.2	43	66	21	105	45	1	3	49	1.27
32992543--32992601	15	4.2	15	74	20	56	45	0	1	52	1.10
32992713--32992803	45	2.0	44	87	2	128	34	28	5	31	1.80
32992782--32992851	16	4.4	16	92	0	95	32	34	0	32	1.58
32992780--32992841	32	1.9	32	93	0	106	29	35	0	35	1.58
32999212--32999288	6	12.8	6	95	0	136	0	35	32	32	1.58
33005178--33005217	21	2.0	21	85	9	57	62	5	2	30	1.29
33013334--33013364	9	3.4	9	90	0	53	25	12	22	38	1.90
33016621--33016659	19	2.1	19	85	4	53	33	2	2	61	1.23
33019853--33019913	23	2.6	23	86	2	77	34	21	19	24	1.96
33020832--33020878	15	3.0	16	75	6	51	59	4	31	4	1.36
33029523--33029551	14	2.1	14	100	0	58	34	17	0	48	1.47
33029518--33029557	14	2.6	15	84	15	55	35	17	2	45	1.62
33035308--33035358	16	3.2	16	75	5	50	43	1	1	52	1.23
33035511--33035551	21	1.9	22	90	5	66	31	0	7	60	1.24
33051537--33051561	2	12.5	2	100	0	50	0	48	0	52	1.00
33058673--33058709	3	12.3	3	100	0	74	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33058733--33058768	3	12.0	3	100	0	72	33	0	0	66	0.92
33060463--33060529	30	2.2	30	81	7	73	19	50	0	29	1.48
33060663--33060859	98	2.0	99	98	1	387	46	15	2	36	1.57
33063425--33063512	44	2.0	44	86	4	124	38	15	22	22	1.92
33063411--33063512	22	4.6	22	80	4	107	42	15	21	20	1.89
33064013--33064095	42	2.0	42	87	0	121	27	26	22	22	1.99
33066893--33066927	17	2.0	17	88	5	52	34	8	5	51	1.56
33069628--33069654	4	6.8	4	100	0	54	51	22	0	25	1.48
33073037--33073075	18	2.2	18	85	0	51	61	7	2	28	1.37
33073279--33073310	10	3.0	11	90	9	57	81	0	0	18	0.70
33073281--33073310	5	5.8	5	92	7	51	83	0	0	16	0.65
33074199--33074423	112	2.0	113	95	0	407	20	28	11	39	1.87
33074777--33074803	12	2.2	12	100	0	54	44	0	7	48	1.31
33075124--33075181	21	2.8	21	89	0	80	31	36	10	22	1.88
33076948--33076980	16	2.1	16	100	0	66	27	12	12	48	1.76
33077049--33077572	190	2.8	189	86	0	735	29	20	18	31	1.96
33077460--33077571	44	2.5	45	85	4	138	28	22	19	29	1.98
33081839--33081926	44	2.0	44	97	0	167	31	23	18	26	1.97
33084059--33084107	19	2.5	19	78	21	57	53	2	0	44	1.12
33088152--33088196	19	2.4	19	85	7	56	46	6	20	26	1.75
33091742--33091818	3	25.3	3	71	7	57	59	3	6	29	1.40
33091745--33091809	24	2.7	24	83	9	71	60	4	6	29	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33098957--33098989	16	2.0	17	88	5	50	27	12	15	45	1.81
33100042--33100098	23	2.5	21	80	11	60	31	0	3	64	1.10
33100076--33100140	19	3.4	18	85	6	76	38	1	6	53	1.35
33101026--33101076	26	1.9	27	88	11	79	50	17	13	17	1.77
33104192--33104305	51	2.2	51	87	6	158	44	7	21	27	1.77
33107306--33107363	5	11.6	5	82	14	57	60	5	0	34	1.19
33107306--33107373	10	6.9	10	76	15	61	60	7	0	32	1.24
33107301--33107375	20	3.9	19	77	14	73	61	6	0	32	1.22
33108675--33108718	22	2.0	23	82	13	56	70	0	9	20	1.14
33109752--33109814	26	2.5	25	90	7	101	36	1	23	38	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135