genome.fa.s8.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  25  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9757671--9757727	29	1.9	30	89	7	89	36	1	7	54	1.38
9758004--9758036	17	2.0	17	88	5	50	60	15	0	24	1.35
9761220--9761542	161	2.0	161	99	0	637	37	11	12	39	1.78
9770131--9770333	34	6.0	34	92	0	352	47	12	14	25	1.79
9770219--9770306	16	5.2	16	65	20	54	52	11	14	21	1.73
9773058--9773106	19	2.7	18	81	6	53	16	2	6	75	1.09
9778786--9778841	29	2.0	28	89	3	85	39	7	0	53	1.28
9779670--9779695	11	2.4	11	100	0	52	0	11	0	88	0.52
9785924--9785956	10	3.3	10	88	12	50	57	0	0	42	0.98
9787477--9787760	141	2.0	143	98	1	554	55	10	2	30	1.48
9797197--9797232	16	2.2	16	100	0	72	16	11	16	55	1.68
9797212--9797270	27	2.2	26	82	11	75	15	6	20	57	1.60
9808125--9808158	17	2.0	17	100	0	68	64	0	5	29	1.17
9808167--9808230	31	2.1	31	84	0	83	43	14	7	34	1.74
9809671--9809723	21	2.6	19	79	8	52	52	0	1	45	1.11
9818557--9818596	19	2.0	19	85	9	53	65	5	0	30	1.14
9819591--9819622	15	2.1	15	100	0	64	6	0	34	59	1.23
9822056--9822081	13	2.0	13	100	0	52	53	0	7	38	1.30
9822067--9822238	81	2.1	81	96	3	321	44	5	11	38	1.64
9843280--9843351	35	2.1	35	82	10	85	25	6	1	66	1.24
9843950--9844224	142	1.9	142	87	4	403	33	17	17	32	1.93
9848571--9848616	23	2.0	23	100	0	92	17	8	17	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9849562--9849826	130	2.0	130	97	2	496	36	15	13	33	1.87
9854150--9854197	18	2.7	18	77	6	53	47	0	0	52	1.00
9860852--9860894	17	2.5	17	80	3	50	65	2	2	30	1.18
9860872--9860919	23	2.2	24	79	20	61	58	2	4	35	1.29
9860921--9860984	9	7.1	9	73	18	53	62	1	1	34	1.14
9860939--9860984	19	2.4	18	85	7	56	63	2	2	32	1.19
9861510--9861666	50	3.2	49	80	10	176	29	11	8	50	1.67
9861604--9861734	68	1.9	69	84	4	174	26	9	10	53	1.65
9861679--9861827	81	1.9	81	88	1	228	25	9	12	53	1.68
9861595--9861951	196	1.8	197	83	6	472	25	9	12	52	1.69
9861760--9861853	47	2.0	48	82	2	118	26	8	11	53	1.66
9861787--9861921	68	2.0	68	91	0	216	28	8	13	49	1.71
9861760--9862046	115	2.5	115	84	4	371	26	8	13	51	1.68
9861849--9861968	47	2.6	47	85	1	161	24	10	13	52	1.70
9862818--9862853	18	2.0	18	94	0	63	30	22	11	36	1.89
9865746--9865776	2	15.5	2	100	0	62	48	0	0	51	1.00
9868316--9869410	366	3.0	364	90	2	1737	31	15	16	36	1.90
9870616--9871713	366	3.0	363	86	4	1471	32	14	16	36	1.89
9872402--9872428	4	6.8	4	100	0	54	0	22	0	77	0.76
9872918--9874015	365	3.0	362	87	2	1552	31	15	16	36	1.90
9875245--9875950	367	1.9	367	90	2	1141	30	15	17	36	1.91
9878315--9878590	71	3.9	71	85	5	359	46	9	19	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9884882--9884964	39	2.2	39	88	2	123	19	19	21	39	1.92
9884909--9884998	45	2.0	45	93	0	153	17	18	22	41	1.91
9895437--9895474	18	2.1	18	90	9	60	21	0	5	73	1.02
9900721--9900777	24	2.4	24	75	0	60	28	54	3	14	1.56
9900751--9900801	18	2.8	18	85	5	68	29	54	3	11	1.54
9912433--9912462	12	2.6	11	94	5	51	33	0	0	66	0.92
9917057--9917083	2	13.5	2	100	0	54	51	0	0	48	1.00
9919972--9920074	51	2.0	52	98	1	199	29	7	5	57	1.50
9919980--9920086	51	2.1	51	87	6	155	31	8	6	53	1.57
9930340--9930415	31	2.4	32	82	6	102	56	2	10	30	1.47
9930633--9930657	5	5.0	5	100	0	50	40	40	0	20	1.52
9931574--9931613	21	1.9	21	85	10	55	52	12	10	25	1.70
9932886--9934269	367	3.8	366	90	2	2137	31	15	16	36	1.91
9938869--9938907	21	1.9	20	89	5	60	53	2	0	43	1.14
9943474--9943541	34	2.0	34	91	8	113	8	14	20	55	1.65
9946441--9946491	24	2.1	24	92	0	84	35	23	23	17	1.95
9947977--9948162	46	4.0	46	88	2	257	37	6	26	29	1.83
9952926--9953074	46	3.2	45	89	1	208	36	7	26	29	1.83
9980986--9981024	11	3.7	10	83	10	51	84	2	5	7	0.84
9988716--9988771	24	2.4	24	82	8	71	51	8	19	19	1.73
9993393--9993439	20	2.5	19	75	6	51	55	2	2	40	1.24
9996477--9996513	11	3.5	11	78	14	51	10	18	21	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9996476--9996515	20	2.0	20	100	0	80	10	20	20	50	1.76
10003429--10003472	22	2.0	22	100	0	88	50	22	9	18	1.75
10007757--10007989	115	2.0	116	99	0	459	35	12	14	37	1.83
10008782--10008812	15	2.1	15	93	0	53	45	0	9	45	1.36
10009400--10009427	7	4.0	7	100	0	56	85	0	0	14	0.59
10013050--10013145	30	3.2	29	77	14	97	28	20	22	28	1.99
10016199--10016240	6	7.0	6	94	0	66	38	0	45	16	1.48
10016309--10016396	27	3.2	27	86	1	122	25	18	37	19	1.94
10020078--10020127	21	2.5	21	87	6	68	32	18	16	34	1.92
10022023--10022311	51	5.7	50	83	5	305	29	15	25	30	1.96
10024649--10024712	22	2.9	22	76	0	56	45	15	21	17	1.85
10026489--10026523	10	3.5	10	92	0	52	17	11	5	65	1.43
10032358--10032409	16	3.2	16	83	5	70	28	0	32	38	1.57
10032646--10032680	18	2.0	17	88	5	52	54	0	0	45	0.99
10042388--10042510	49	2.5	50	80	7	146	26	17	26	30	1.98
10044983--10045012	6	5.0	6	100	0	60	66	33	0	0	0.92
10048821--10048892	34	2.1	34	97	2	137	36	20	27	15	1.93
10050115--10050143	10	2.9	10	100	0	58	17	41	0	41	1.49
10050133--10050188	22	2.5	22	91	2	85	26	30	1	41	1.66
10050160--10050296	51	2.7	51	97	0	256	29	29	0	40	1.57
10052700--10052755	29	1.9	29	96	0	103	46	25	1	26	1.63
10052747--10052791	22	2.2	20	84	11	56	46	22	0	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10052822--10052877	29	1.9	29	96	0	103	46	25	1	26	1.63
10052655--10052929	122	2.3	121	94	3	475	46	26	0	25	1.58
10052869--10053254	21	17.2	20	72	23	149	47	25	0	26	1.54
10052744--10052987	68	3.5	72	72	22	193	47	25	0	26	1.55
10052805--10053050	89	2.7	91	88	8	349	47	26	0	25	1.58
10053054--10053113	29	2.1	29	100	0	120	46	26	0	26	1.53
10052912--10053202	143	2.1	135	89	6	431	47	25	0	26	1.55
10052747--10053355	232	2.6	229	93	3	1019	47	25	0	26	1.55
10053049--10053292	89	2.7	90	90	8	370	47	25	0	27	1.52
10053287--10053401	29	4.0	29	90	0	194	43	27	0	28	1.55
10053046--10053357	23	13.2	24	69	23	93	46	25	0	28	1.53
10053685--10053870	23	7.3	24	74	24	161	46	25	0	27	1.57
10053684--10053870	29	7.1	29	71	24	173	45	25	0	27	1.57
10053685--10053870	52	3.6	52	86	8	281	46	25	0	27	1.57
10053780--10053825	22	2.2	20	88	11	67	45	28	0	26	1.54
10053929--10054090	37	4.4	37	66	21	97	40	11	3	45	1.55
10053938--10054108	55	3.1	55	100	0	342	38	10	3	47	1.55
10054084--10054125	17	2.4	18	80	4	50	42	9	2	45	1.49
10057111--10057579	123	3.8	123	90	1	699	34	22	15	27	1.94
10066574--10066626	19	2.7	18	78	21	54	35	7	13	43	1.72
10074699--10074757	23	2.6	22	82	10	75	44	20	3	32	1.68
10076919--10076972	25	2.2	25	93	0	90	35	22	22	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10079274--10079318	21	2.1	22	91	4	74	40	2	0	57	1.11
10097207--10097471	33	7.5	33	69	22	130	33	25	20	20	1.97
10097302--10097438	42	3.5	42	75	17	157	32	25	18	22	1.97
10097300--10097473	75	2.3	75	92	0	294	33	25	19	20	1.96
10104307--10104503	102	1.9	102	93	0	340	31	26	21	20	1.98
10104411--10104547	42	3.5	42	78	17	193	32	28	18	20	1.96
10104409--10104582	75	2.3	75	97	0	330	33	28	18	18	1.95
10104272--10104612	177	1.9	177	92	0	565	31	27	20	20	1.97
10105398--10105560	79	2.1	79	91	0	263	31	12	23	32	1.92
10111567--10111603	18	2.1	18	100	0	74	43	18	0	37	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135