genome.fa.s8.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  57  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23419802--23419849	18	2.8	17	81	6	62	43	8	0	47	1.33
23422366--23422401	3	12.0	3	100	0	72	66	0	0	33	0.92
23426273--23426303	1	31.0	1	100	0	62	0	100	0	0	0.00
23433175--23433320	41	3.6	40	77	12	138	28	28	19	23	1.99
23433175--23433340	82	2.0	83	81	10	198	28	26	18	25	1.98
23436409--23436433	9	2.8	9	100	0	50	68	8	0	24	1.16
23436834--23436879	21	2.2	21	88	7	67	65	0	8	26	1.21
23437210--23437322	19	5.8	19	91	4	190	37	15	9	38	1.80
23437210--23437321	40	2.8	40	97	2	210	37	14	9	38	1.79
23437203--23437322	59	2.1	56	90	6	188	37	15	9	38	1.79
23437617--23437661	18	2.5	18	85	0	54	44	11	0	44	1.39
23441204--23441400	105	1.9	104	81	4	243	32	17	24	25	1.96
23442694--23442772	11	6.9	11	70	23	56	65	6	0	27	1.16
23449906--23450073	47	3.6	45	71	19	141	46	2	3	47	1.35
23449870--23450014	44	3.2	43	69	19	116	46	2	3	48	1.31
23449954--23450014	28	2.2	28	85	5	81	45	0	3	50	1.17
23449854--23450039	91	2.0	91	91	0	300	46	2	3	46	1.34
23450155--23450184	16	1.9	15	93	6	51	40	0	10	50	1.36
23450176--23450210	18	2.0	17	88	5	52	45	0	0	54	0.99
23450295--23450329	18	2.0	17	88	5	52	45	0	0	54	0.99
23450055--23450470	119	3.5	119	95	1	726	42	2	5	50	1.38
23450684--23450719	16	2.2	16	90	0	54	41	30	0	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23457063--23457106	21	2.1	21	95	4	81	25	72	0	2	0.96
23463795--23463819	2	12.5	2	100	0	50	52	0	0	48	1.00
23473212--23473257	23	2.0	23	86	0	65	54	0	0	45	0.99
23485064--23485102	18	2.2	17	86	4	51	23	0	10	66	1.22
23485490--23485514	2	12.5	2	100	0	50	48	0	0	52	1.00
23485688--23485915	71	3.2	70	65	16	178	46	4	6	42	1.51
23485699--23485989	145	2.0	146	99	0	575	46	6	6	40	1.56
23508155--23508242	42	2.1	42	86	0	122	31	23	27	17	1.97
23510722--23510799	26	3.0	27	73	21	92	15	15	8	60	1.58
23515950--23515977	2	14.0	2	100	0	56	0	50	0	50	1.00
23518756--23518797	17	2.5	17	80	7	50	28	2	11	57	1.47
23525300--23525412	40	2.9	37	76	5	109	32	23	17	26	1.97
23525304--23525437	41	3.4	41	72	11	127	33	23	16	26	1.95
23526429--23526506	2	40.5	2	87	7	99	50	1	0	48	1.09
23540989--23541014	13	2.0	13	100	0	52	46	15	15	23	1.83
23544602--23544644	19	2.3	19	84	4	61	65	0	0	34	0.93
23544604--23544669	18	3.6	18	82	15	73	66	3	0	30	1.06
23544599--23544678	9	8.4	9	72	13	54	68	2	0	28	1.02
23544622--23544686	26	2.5	26	80	9	69	69	3	0	27	1.03
23547925--23547966	17	2.5	17	78	17	52	26	2	7	64	1.32
23548303--23548476	9	18.9	9	71	15	79	58	7	0	33	1.31
23549624--23549667	22	1.9	23	86	9	63	59	0	2	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23554333--23554397	27	2.4	27	86	0	85	23	30	32	13	1.93
23554476--23554513	10	3.7	10	89	3	58	71	0	28	0	0.87
23557007--23557414	158	2.7	154	80	12	489	30	9	6	53	1.57
23557667--23557779	20	5.6	21	74	12	78	0	28	1	69	0.98
23557670--23557780	38	2.8	38	82	13	129	0	28	1	69	0.99
23557702--23557771	4	17.5	4	74	21	58	0	28	0	71	0.86
23557686--23557780	38	2.4	38	87	7	136	0	31	1	67	0.98
23557667--23557779	10	11.3	10	69	20	67	0	28	1	69	0.98
23558274--23558332	22	2.6	22	86	7	75	35	6	1	55	1.36
23558656--23558685	2	15.0	2	100	0	60	50	0	0	50	1.00
23560675--23560708	3	11.3	3	100	0	68	32	0	0	67	0.91
23562815--23562997	46	4.0	46	89	1	262	35	9	26	28	1.88
23562823--23562997	91	1.9	90	88	4	262	35	9	26	28	1.88
23563513--23563610	49	2.0	50	82	6	119	46	7	16	29	1.73
23564467--23564562	40	2.4	40	80	3	104	37	9	11	41	1.74
23564503--23564562	20	3.1	19	76	9	66	35	10	11	43	1.75
23572736--23572785	20	2.5	19	80	6	55	38	20	6	36	1.77
23574097--23574142	22	2.1	22	91	0	74	50	34	0	15	1.44
23574096--23574153	7	8.3	7	84	7	73	46	36	0	17	1.48
23574294--23574365	36	2.0	36	97	0	135	38	15	11	34	1.83
23575277--23575369	22	4.1	22	78	10	98	41	18	24	15	1.88
23575271--23575380	22	4.6	24	75	13	93	40	18	24	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23575271--23575380	47	2.3	47	86	6	143	40	18	24	16	1.90
23576439--23576524	5	17.0	5	77	17	81	56	2	1	39	1.19
23576442--23576489	21	2.3	22	85	10	73	60	0	0	39	0.97
23576444--23576483	8	4.8	8	82	11	53	60	0	0	40	0.97
23577245--23577303	11	5.4	11	78	13	68	40	3	0	55	1.16
23577245--23577303	21	2.8	20	85	12	73	40	3	0	55	1.16
23579477--23579527	22	2.4	22	93	3	86	33	27	15	23	1.95
23580597--23580630	2	17.0	2	93	0	59	50	0	2	47	1.16
23584318--23584358	20	2.0	21	85	4	57	73	4	9	12	1.24
23584511--23584608	48	2.0	48	100	0	196	36	10	22	30	1.87
23592397--23592533	2	70.5	2	69	8	50	40	8	0	51	1.31
23592397--23592475	29	2.6	31	82	8	108	43	10	0	46	1.37
23592396--23592493	29	3.3	29	79	4	106	40	8	0	51	1.32
23592594--23592638	23	1.9	23	81	4	54	17	4	15	62	1.49
23592888--23593031	73	2.0	73	95	0	261	26	18	19	35	1.95
23596288--23596474	100	1.8	99	84	7	250	29	16	24	29	1.96
23596464--23596509	24	1.9	24	86	8	67	73	4	0	21	1.00
23596476--23596520	20	2.2	20	84	7	56	75	4	2	17	1.07
23597073--23597107	15	2.4	15	90	4	54	48	0	8	42	1.33
23601616--23601671	17	3.4	16	76	11	51	35	0	5	58	1.21
23601618--23601670	22	2.4	22	78	12	54	35	0	5	58	1.22
23603773--23603980	104	2.0	104	100	0	416	29	11	22	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23611414--23611465	24	2.2	24	89	0	77	51	5	3	38	1.44
23615209--23615273	32	2.1	32	94	2	114	47	10	9	32	1.70
23615919--23616023	51	2.1	51	96	0	192	38	16	12	33	1.86
23621235--23621280	2	23.5	2	95	4	85	50	0	50	0	1.00
23630242--23630279	14	2.7	15	84	12	53	18	28	2	50	1.61
23631785--23631809	2	12.5	2	100	0	50	48	0	0	52	1.00
23640561--23640623	28	2.3	27	78	10	67	46	11	1	41	1.49
23640580--23640625	15	3.3	14	82	8	58	41	10	0	47	1.38
23640726--23640774	25	2.0	25	100	0	98	24	26	8	40	1.83
23647260--23647300	18	2.4	16	88	8	55	53	4	0	41	1.22
23647260--23647301	16	2.4	18	88	7	61	52	4	0	42	1.22
23648501--23648637	40	3.5	40	75	4	118	37	21	21	18	1.94
23648675--23648875	41	4.9	41	91	3	325	22	20	24	32	1.98
23648977--23649455	46	10.6	46	85	4	663	30	25	17	26	1.97
23649095--23649168	36	2.1	36	94	0	130	32	28	18	20	1.96
23650671--23650734	8	8.0	8	93	6	112	12	12	0	75	1.06
23650662--23650734	16	4.7	15	91	6	103	10	13	0	75	1.05
23650737--23650764	12	2.3	12	100	0	56	0	0	14	85	0.59
23651554--23651587	7	5.0	7	85	7	52	0	14	0	85	0.60
23651557--23651587	10	3.1	10	90	0	53	0	16	0	83	0.64
23651554--23651596	20	2.2	20	91	0	68	2	16	0	81	0.79
23651559--23651602	20	2.2	20	83	0	52	4	18	2	75	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23651600--23651626	14	1.9	14	100	0	54	11	0	7	81	0.87
23658137--23658630	162	3.1	162	71	16	497	50	7	11	29	1.67
23673473--23673585	37	3.1	37	88	1	174	31	6	15	46	1.71
23673593--23673629	9	3.8	10	83	16	51	21	5	29	43	1.75
23673593--23673630	20	1.9	20	94	0	67	21	5	28	44	1.73
23673722--23673799	29	2.8	27	75	16	77	30	11	25	32	1.91
23674665--23674795	37	3.0	42	70	19	101	51	9	4	33	1.55
23674665--23674795	42	3.1	42	74	10	124	51	9	4	33	1.55
23675886--23675945	23	2.6	24	73	26	58	43	10	0	46	1.37
23689862--23689890	4	7.2	4	100	0	58	27	0	72	0	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135