genome.fa.s8.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  134  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47933756--47934686	124	7.5	124	90	0	1416	29	19	17	32	1.95
47933756--47934686	249	3.8	248	90	0	1470	29	19	17	32	1.95
47933756--47934686	373	2.5	373	93	0	1526	29	19	17	32	1.95
47934806--47934851	22	2.1	21	88	4	65	47	39	0	13	1.42
47935268--47935313	19	2.4	19	82	10	67	65	2	6	26	1.28
47938296--47938473	46	3.8	46	88	1	257	30	23	8	37	1.86
47938299--47938469	93	1.8	93	88	0	261	29	22	9	38	1.86
47939708--47939755	17	2.9	17	90	3	71	54	18	0	27	1.44
47950735--47950781	16	2.9	16	79	17	53	53	0	6	40	1.27
47957957--47957999	22	2.0	20	83	16	52	41	2	0	55	1.12
47958329--47958367	20	1.9	20	84	5	51	43	10	2	43	1.52
47958531--47958570	20	2.1	18	90	9	62	70	0	0	30	0.88
47975266--47975485	107	2.1	107	96	0	404	38	12	13	35	1.82
47975878--47976035	38	4.2	38	98	0	298	45	14	18	21	1.85
47979901--47979942	1	42.0	1	95	0	66	0	0	95	4	0.28
47992604--47992671	30	2.2	31	84	7	86	32	19	2	45	1.65
47993871--47993895	11	2.3	11	100	0	50	60	8	8	24	1.52
48002675--48002737	25	2.5	25	84	5	74	31	17	14	36	1.90
48007516--48007547	16	2.0	16	100	0	64	12	6	12	68	1.37
48007517--48007553	16	2.4	16	90	4	58	16	8	10	64	1.47
48012258--48012347	44	2.0	44	81	8	103	57	4	6	31	1.44
48024222--48024265	16	2.8	16	85	0	61	56	0	25	18	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48026984--48027121	70	2.0	70	97	0	258	28	16	16	37	1.91
48035785--48035818	16	2.0	18	88	11	54	41	11	0	47	1.40
48036057--48036092	10	3.6	10	96	0	63	27	8	0	63	1.23
48039978--48040012	17	2.1	17	100	0	70	34	5	17	42	1.73
48042845--48042902	3	19.3	3	74	0	53	31	1	5	62	1.27
48044867--48044931	17	3.6	17	72	11	58	36	41	1	20	1.61
48044838--48044940	37	2.7	37	91	5	154	34	41	2	20	1.67
48045155--48045422	114	2.4	114	91	1	430	26	27	22	23	1.99
48045357--48045463	41	2.6	41	89	0	151	29	28	19	21	1.98
48045240--48045578	156	2.2	156	88	0	491	28	27	20	22	1.99
48045557--48045724	73	2.3	70	80	11	189	27	22	21	29	1.99
48045618--48045947	113	2.9	112	89	2	507	28	24	20	26	1.99
48045395--48045982	300	2.0	299	84	5	774	28	25	20	25	1.99
48048920--48049007	43	2.0	42	81	16	101	62	2	7	27	1.35
48051314--48051382	34	2.0	34	91	0	111	37	11	15	34	1.84
48056772--48056798	13	2.1	13	100	0	54	29	0	22	48	1.51
48059842--48059866	13	1.9	13	100	0	50	40	24	4	32	1.73
48063173--48063214	20	2.0	20	86	4	57	35	11	16	35	1.86
48068038--48068221	49	3.8	49	79	2	174	24	22	27	25	2.00
48068735--48068879	49	3.0	49	79	0	164	25	25	22	26	2.00
48099232--48099292	29	2.1	29	84	0	77	45	19	11	22	1.82
48100065--48100102	18	2.2	18	90	4	60	18	23	0	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48112873--48112908	13	2.8	13	95	0	63	44	0	0	55	0.99
48116298--48116348	23	2.3	23	96	3	95	45	11	15	27	1.81
48117933--48118077	43	3.4	43	81	5	161	28	17	23	31	1.97
48124045--48124115	30	2.4	30	81	11	85	54	2	8	33	1.45
48131530--48131570	21	2.0	20	86	13	57	36	0	2	60	1.10
48135261--48135390	43	3.2	43	60	16	103	53	7	1	36	1.39
48135251--48135411	80	2.0	81	98	1	315	52	8	1	37	1.40
48148013--48148641	155	4.1	154	82	5	693	34	11	14	38	1.83
48148013--48148641	309	2.0	306	82	4	764	34	11	14	38	1.83
48149217--48149262	13	3.8	13	76	23	55	58	0	0	41	0.98
48149217--48149269	24	2.3	22	84	15	72	60	0	0	39	0.97
48149217--48149268	8	6.2	9	75	20	51	59	0	0	40	0.97
48149218--48149264	18	2.8	18	78	18	57	59	0	0	40	0.97
48149217--48149273	23	2.5	24	88	11	84	59	0	0	40	0.97
48151484--48151522	21	1.9	21	89	5	62	28	15	20	35	1.93
48152993--48153050	29	2.0	29	83	6	73	50	3	0	46	1.18
48166192--48166484	147	2.0	147	99	0	577	53	23	7	15	1.66
48167886--48167925	20	2.0	20	90	0	62	27	10	12	50	1.72
48167871--48167937	34	1.9	35	87	3	100	32	8	11	46	1.72
48169250--48169296	12	3.9	12	75	10	51	68	17	8	6	1.37
48169241--48169300	24	2.7	21	85	14	93	66	20	8	5	1.37
48172477--48172525	24	2.0	24	100	0	98	53	16	12	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48187772--48187837	19	3.5	19	82	0	87	15	21	19	43	1.87
48192955--48192981	7	3.9	7	100	0	54	44	14	0	40	1.46
48194882--48194915	13	2.6	13	90	0	50	70	5	2	20	1.21
48194998--48195039	19	2.2	18	87	8	57	30	2	0	66	1.04
48195000--48195052	20	2.6	21	82	11	65	32	3	0	64	1.12
48196929--48196981	23	2.3	23	80	6	63	11	24	13	50	1.73
48207079--48207138	25	2.3	27	88	8	90	36	15	11	36	1.83
48212769--48212884	42	2.7	43	82	4	137	29	30	17	23	1.97
48214743--48214778	14	2.6	14	95	0	63	41	0	22	36	1.54
48216155--48216221	21	3.2	21	85	4	73	14	29	23	31	1.95
48218228--48218252	4	6.2	4	100	0	50	72	0	0	28	0.86
48219176--48219262	42	2.1	42	88	0	129	27	31	18	22	1.97
48220333--48220436	53	2.0	53	81	7	122	26	25	27	19	1.99
48226333--48226399	27	2.5	27	80	0	71	19	20	17	41	1.90
48226610--48226738	45	2.9	44	82	3	159	24	19	11	44	1.83
48228963--48228999	18	2.1	18	100	0	74	27	40	5	27	1.78
48229696--48229740	23	2.0	22	82	4	54	40	4	17	37	1.70
48230468--48230497	3	10.0	3	100	0	60	33	0	0	66	0.92
48233957--48234000	11	4.0	10	83	16	52	81	0	15	2	0.78
48235245--48235430	88	2.1	88	85	0	255	25	20	25	27	1.99
48235634--48235827	101	1.9	101	88	4	293	29	20	24	25	1.99
48235610--48235778	50	3.4	49	71	4	142	29	20	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48235834--48236160	44	7.5	44	72	13	248	29	19	21	29	1.97
48235878--48236081	84	2.4	88	79	12	201	28	19	23	28	1.98
48236007--48236352	174	2.0	172	80	8	380	29	19	22	28	1.98
48236382--48236651	44	6.1	44	92	0	436	26	17	25	30	1.97
48236400--48236861	88	5.3	87	77	9	338	28	18	23	29	1.98
48236394--48236697	132	2.3	132	87	3	389	28	18	24	29	1.98
48236749--48237038	44	6.6	44	72	9	196	29	19	24	26	1.99
48236647--48237047	44	9.1	44	67	12	169	31	19	23	26	1.98
48236662--48237126	88	5.3	88	65	16	282	30	20	23	26	1.98
48236576--48237156	176	3.3	176	89	2	832	30	19	22	27	1.98
48237134--48237263	44	3.0	45	76	4	140	33	14	20	32	1.92
48238045--48238089	23	2.0	23	81	0	54	22	0	15	62	1.33
48239915--48239972	25	2.4	24	80	11	64	15	3	27	53	1.58
48239928--48239979	25	2.1	25	82	7	61	15	5	26	51	1.65
48242929--48242978	25	2.0	26	88	4	75	20	2	22	56	1.53
48242929--48242988	25	2.3	25	82	5	66	18	1	26	53	1.54
48242937--48243052	63	1.9	60	83	5	151	18	4	24	53	1.62
48242385--48243691	704	1.9	701	85	5	1839	36	11	13	38	1.80
48243736--48243769	12	2.7	13	86	4	52	14	5	32	47	1.69
48244790--48244825	16	2.2	16	100	0	72	25	0	36	38	1.56
48249322--48249368	22	2.4	19	80	19	60	23	0	25	51	1.49
48249867--48250019	77	2.0	77	96	0	279	26	15	14	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48266085--48266142	27	2.1	27	80	0	62	17	17	41	24	1.90
48267241--48267288	23	2.1	23	88	0	69	27	16	20	35	1.94
48267863--48267915	25	2.1	25	100	0	106	26	15	39	18	1.90
48269517--48269549	17	1.9	17	88	11	50	51	0	3	45	1.16
48270303--48270350	16	3.1	15	77	17	53	39	22	4	33	1.74
48274853--48274929	3	25.7	3	100	0	154	0	32	0	67	0.91
48282476--48282609	61	2.2	60	81	6	146	34	6	15	43	1.73
48284049--48284090	20	2.2	19	91	4	66	71	2	0	26	0.98
48287825--48288365	270	2.0	270	97	0	1010	29	15	26	29	1.96
48291513--48291587	37	2.0	37	82	10	91	54	1	2	41	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135