genome.fa.s8.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  39  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15471929--15472958	37	28.1	37	79	4	941	33	20	16	30	1.94
15471929--15472958	73	14.0	73	80	5	915	33	20	16	30	1.94
15471929--15472836	110	8.3	109	84	3	990	33	19	16	30	1.94
15472788--15472932	78	1.9	78	85	2	202	33	18	17	30	1.94
15484227--15484305	27	2.8	28	81	11	90	27	5	3	63	1.33
15485257--15485307	24	2.1	24	88	0	75	52	5	3	37	1.44
15487634--15487685	20	2.9	17	73	15	50	25	0	7	67	1.17
15487883--15487917	2	17.5	2	100	0	70	48	0	0	51	1.00
15494598--15494649	12	4.1	12	74	13	50	36	7	0	55	1.29
15494605--15494655	27	1.9	26	92	4	84	33	5	1	58	1.33
15494607--15494664	27	2.1	27	81	6	64	36	8	3	51	1.49
15497754--15497854	49	2.1	49	100	0	202	31	13	22	31	1.93
15499534--15499587	22	2.5	22	68	0	54	64	9	7	18	1.45
15505573--15505597	12	2.1	12	100	0	50	44	8	16	32	1.76
15510725--15510783	25	2.4	25	94	0	100	42	23	18	15	1.88
15510653--15510914	131	2.0	131	98	0	506	44	21	18	15	1.87
15510856--15510934	25	3.2	25	90	0	122	40	21	18	18	1.92
15525610--15525642	17	1.9	17	88	11	50	42	3	12	42	1.57
15527744--15527784	13	2.9	14	77	22	50	41	0	0	58	0.98
15527744--15527780	15	2.3	17	86	13	60	37	0	0	62	0.96
15528306--15528338	15	2.1	16	94	5	59	36	0	0	63	0.95
15528328--15528424	29	3.0	33	70	28	84	54	2	1	42	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15528352--15528401	16	3.2	16	70	18	52	52	0	0	48	1.00
15534988--15535047	26	2.3	26	85	0	75	30	33	16	20	1.94
15535486--15535572	44	2.0	44	100	0	174	42	20	22	13	1.88
15538408--15538439	13	2.4	14	85	15	50	56	0	0	43	0.99
15538513--15538554	13	2.9	14	80	13	50	52	0	2	45	1.13
15538585--15538630	14	3.0	16	75	12	60	52	4	0	43	1.21
15541205--15541322	61	1.9	61	81	6	141	43	11	0	44	1.45
15543976--15544019	9	4.6	9	85	8	52	29	2	4	63	1.26
15543976--15544019	19	2.3	19	84	11	54	29	2	4	63	1.26
15543985--15544028	19	2.4	18	82	14	54	25	4	6	63	1.38
15546500--15546534	16	2.1	17	94	5	63	31	0	0	68	0.90
15546521--15546564	23	2.0	22	81	4	52	27	0	6	65	1.17
15547924--15547953	2	15.5	2	93	6	53	50	0	0	50	1.00
15548858--15548904	20	2.3	20	85	7	60	51	4	4	40	1.41
15549487--15549526	16	2.5	16	87	0	53	65	2	10	22	1.35
15550475--15550500	2	13.0	2	100	0	52	50	0	0	50	1.00
15552382--15552455	25	3.0	25	83	0	94	28	18	27	25	1.98
15553963--15554256	44	6.6	44	79	2	257	31	18	15	34	1.93
15553963--15554256	89	3.3	88	83	4	315	31	18	15	34	1.93
15555065--15555110	21	2.1	22	84	11	60	58	0	0	41	0.98
15556842--15557038	108	1.8	108	86	3	288	30	13	19	36	1.91
15556823--15557038	53	4.0	53	79	7	256	28	14	20	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15573412--15573631	109	2.0	109	100	0	440	38	12	12	36	1.81
15575592--15575653	26	2.3	27	86	2	81	61	1	1	35	1.16
15575644--15575675	11	2.9	11	100	0	64	46	0	6	46	1.27
15578566--15578602	18	2.1	17	90	5	56	48	2	0	48	1.15
15578571--15578605	9	3.9	9	84	0	52	51	2	0	45	1.16
15582430--15582536	25	4.3	25	71	8	83	37	15	22	24	1.93
15582430--15582527	50	2.0	50	81	0	115	38	16	21	23	1.92
15587901--15587989	27	3.3	27	82	0	97	47	8	22	21	1.78
15605376--15605436	30	2.0	30	96	0	113	27	24	13	34	1.93
15621113--15621165	25	2.2	24	86	6	72	50	18	16	13	1.77
15621514--15621567	24	2.2	24	90	0	81	50	9	3	37	1.52
15625940--15625991	24	2.2	24	92	0	86	51	9	1	36	1.46
15630743--15630782	18	2.1	18	86	9	53	25	2	10	62	1.39
15639963--15640031	29	2.3	29	83	9	86	49	1	4	44	1.31
15641705--15641755	25	2.1	25	88	3	77	33	13	5	47	1.67
15643244--15644889	823	2.0	823	100	0	3292	27	18	13	40	1.88
15647719--15647806	45	2.0	45	90	0	140	38	15	22	22	1.92
15655517--15655571	27	2.0	27	89	0	83	29	3	16	50	1.62
15655544--15655604	32	1.9	32	96	0	113	27	3	18	50	1.62
15656794--15656848	28	2.0	28	100	0	110	30	10	10	47	1.73
15665768--15665848	25	3.2	25	85	0	81	17	29	17	35	1.93
15665803--15665858	25	2.2	25	87	0	76	21	26	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15668274--15668321	16	3.0	16	75	0	51	66	4	2	27	1.21
15675012--15675074	30	2.2	29	83	8	76	46	7	4	41	1.54
15684443--15684487	23	1.9	24	86	13	67	71	2	4	22	1.15
15695606--15695799	50	3.9	50	79	2	210	27	15	24	31	1.96
15695606--15695799	101	1.9	101	82	2	246	27	15	24	31	1.96
15696898--15697013	40	2.9	40	75	5	99	39	18	15	26	1.90
15697059--15697440	41	9.3	41	91	0	575	19	22	26	32	1.97
15697903--15698009	50	2.1	50	89	0	169	19	32	22	25	1.97
15698477--15698528	18	2.8	18	80	5	59	73	1	3	21	1.10
15702683--15702821	43	3.2	43	82	4	174	25	16	29	28	1.97
15702659--15702820	86	1.9	85	84	6	220	24	16	29	30	1.96
15706202--15706226	13	1.9	13	100	0	50	32	8	16	44	1.76
15707196--15707431	51	4.7	48	76	11	197	26	17	25	30	1.97
15707196--15707471	101	2.7	101	82	6	328	27	16	25	31	1.96
15724299--15724340	18	2.5	17	85	11	59	23	7	30	38	1.82
15726394--15726429	16	2.2	16	95	0	63	25	16	19	38	1.92
15732282--15732376	45	2.1	45	90	0	154	27	18	23	30	1.98
15736951--15737078	29	4.4	29	85	2	168	27	14	21	36	1.92
15736907--15737078	57	3.0	58	82	3	186	28	13	19	37	1.91
15736944--15737097	29	5.4	29	82	5	125	25	16	21	36	1.94
15738877--15739027	56	2.6	58	80	8	162	30	23	23	22	1.99
15738915--15739031	28	4.2	28	88	0	162	31	23	23	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15739140--15739241	26	3.9	26	79	5	125	41	23	17	17	1.90
15739393--15739586	27	7.2	26	80	6	165	20	21	19	39	1.93
15739393--15739586	82	2.4	81	79	9	223	20	21	19	39	1.93
15741972--15742006	18	1.9	18	94	0	61	48	2	17	31	1.61
15743656--15743725	34	2.1	34	97	0	131	34	20	2	42	1.66
15743902--15743962	31	2.0	31	83	0	77	21	24	19	34	1.96
15743933--15743957	13	1.9	13	100	0	50	16	32	20	32	1.94
15748793--15748830	18	2.1	18	90	0	58	57	5	5	31	1.43
15753322--15753353	16	2.0	16	93	0	55	25	21	6	46	1.74
15757660--15757758	27	3.7	27	86	0	108	32	14	27	26	1.94
15757680--15757771	27	3.4	27	86	0	112	36	13	25	25	1.91
15760457--15760495	20	2.0	20	94	0	69	15	23	2	58	1.49
15760697--15760938	50	4.7	50	78	6	193	24	27	20	27	1.99
15761044--15761088	22	2.1	21	83	4	54	51	11	4	33	1.58
15765653--15765696	23	2.0	22	86	13	63	45	20	18	15	1.85
15772839--15772978	27	5.2	27	78	8	151	35	15	23	25	1.94
15772959--15773038	27	3.0	27	87	7	110	36	6	26	31	1.81
15774492--15774559	27	2.5	27	90	4	102	27	13	25	33	1.93
15774540--15774613	30	2.6	28	80	6	85	33	17	25	22	1.96
15774629--15774703	31	2.5	30	84	4	89	37	20	20	22	1.94
15776121--15776170	26	1.9	26	87	0	73	40	10	20	30	1.85
15777392--15777456	21	3.1	21	75	6	51	44	16	21	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15777412--15777526	42	2.7	43	78	16	134	43	19	20	17	1.88
15778941--15779094	27	5.8	27	83	3	190	38	12	23	25	1.90
15778941--15779094	26	5.8	27	83	3	172	38	12	23	25	1.90
15778952--15779094	53	2.7	53	86	8	177	37	13	23	25	1.92
15783005--15783035	16	1.9	16	93	0	53	29	16	25	29	1.96
15783117--15783176	27	2.3	27	88	2	86	20	26	21	31	1.98
15786059--15786118	20	3.0	20	76	11	61	38	5	5	51	1.45
15786161--15786194	12	2.8	12	90	0	50	47	2	2	47	1.32
15791011--15791063	20	2.7	20	81	0	70	7	26	20	45	1.78
15794301--15794343	20	2.2	20	83	8	52	51	2	25	20	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135