genome.fa.s8.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  46  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18347804--18347901	40	2.6	37	74	11	99	23	18	28	29	1.98
18351495--18351540	20	2.4	19	77	22	51	52	6	0	41	1.27
18362299--18362337	21	1.9	20	84	5	51	7	17	2	71	1.21
18375165--18375236	35	2.1	35	100	0	144	40	8	2	48	1.48
18391599--18391628	15	2.0	15	100	0	60	20	0	20	60	1.37
18394860--18394912	13	4.1	13	72	0	52	32	9	24	33	1.87
18394860--18394964	26	4.0	26	74	14	79	32	7	22	37	1.83
18394921--18394966	13	3.5	13	81	3	56	39	4	17	39	1.69
18399343--18399387	21	2.1	21	84	8	56	44	0	6	48	1.29
18407534--18407859	166	2.0	166	93	3	559	37	23	9	30	1.86
18417090--18417151	17	3.6	16	77	12	61	51	1	3	43	1.27
18418900--18418965	33	2.0	33	88	8	98	71	1	3	24	1.09
18418940--18418964	13	1.9	13	100	0	50	80	0	0	20	0.72
18420757--18420802	23	2.0	24	87	12	69	34	13	4	47	1.62
18421761--18421799	17	2.3	17	86	0	51	33	2	2	61	1.23
18421789--18421882	22	4.3	23	75	15	78	44	1	3	51	1.24
18422665--18422692	3	9.3	3	100	0	56	32	32	0	35	1.58
18422690--18422716	12	2.2	12	100	0	54	18	40	0	40	1.51
18445203--18445250	24	2.0	24	95	0	87	52	16	14	16	1.76
18445205--18445256	24	2.2	24	89	0	77	53	21	11	13	1.70
18463458--18463482	12	2.1	12	100	0	50	20	16	0	64	1.30
18476025--18476104	14	5.6	14	75	8	63	25	2	37	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18476368--18476691	58	6.0	50	85	10	353	53	0	4	41	1.24
18476385--18476471	23	3.6	23	82	11	120	56	0	5	37	1.23
18476422--18476691	58	4.8	58	87	8	423	52	0	4	41	1.25
18476374--18476691	108	2.9	107	92	5	501	53	0	4	41	1.24
18476493--18476575	23	3.4	23	75	12	85	53	0	6	40	1.26
18476506--18476587	23	3.1	28	66	20	77	53	0	3	42	1.18
18476516--18476598	23	3.4	24	76	15	82	54	0	3	42	1.18
18476624--18476710	35	2.5	35	83	5	115	52	1	4	41	1.29
18486351--18486518	84	2.0	84	95	0	300	26	6	21	45	1.76
18486613--18486697	42	2.0	42	97	0	161	16	10	16	56	1.67
18490815--18490863	25	1.9	26	95	4	91	34	16	14	34	1.89
18500413--18500446	13	2.7	13	86	4	52	38	5	14	41	1.70
18509012--18509261	126	2.0	126	97	0	475	28	17	28	25	1.98
18510698--18510935	117	2.0	119	98	1	462	49	8	7	34	1.62
18513075--18513112	5	7.6	5	100	0	76	42	39	0	18	1.50
18514283--18514311	2	14.5	2	100	0	58	51	0	0	48	1.00
18515853--18515893	21	2.0	21	90	0	64	43	17	17	21	1.87
18528299--18528362	21	3.0	22	90	4	103	0	32	15	51	1.44
18530651--18530875	30	7.5	30	97	1	409	52	0	8	38	1.33
18534970--18535004	19	1.9	18	88	11	54	57	0	5	37	1.23
18537731--18537763	15	2.2	15	100	0	66	27	0	0	72	0.85
18551425--18551624	3	66.7	3	73	3	98	9	25	30	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18551464--18551592	39	3.2	39	78	3	132	10	25	29	34	1.89
18551542--18551622	30	2.7	30	90	0	135	9	29	28	32	1.89
18551425--18551624	45	4.5	45	73	10	144	9	25	30	35	1.87
18561299--18561343	4	11.2	4	95	0	81	24	2	26	46	1.64
18564969--18565018	24	2.1	24	96	0	91	16	18	16	50	1.79
18571732--18571787	22	2.6	22	83	10	64	44	3	0	51	1.18
18571730--18571802	20	3.6	19	73	12	65	38	2	0	58	1.12
18571774--18571838	29	2.3	29	77	17	73	26	1	3	69	1.12
18589692--18589736	21	2.1	23	88	12	69	68	8	8	13	1.38
18592564--18592760	34	5.7	34	86	2	259	40	17	23	18	1.91
18592550--18592761	69	3.1	68	84	2	262	42	16	22	18	1.89
18592564--18592760	103	1.9	103	94	0	349	40	17	23	18	1.91
18592993--18593030	14	2.8	13	88	7	58	36	10	2	50	1.51
18594160--18594208	24	2.0	24	100	0	98	38	12	20	28	1.89
18598832--18598857	11	2.4	11	100	0	52	50	7	42	0	1.31
18599578--18599665	39	2.2	40	84	9	110	36	7	18	37	1.80
18617640--18617779	46	3.0	46	92	0	217	37	7	25	30	1.83
18624524--18624709	94	2.0	94	94	2	329	34	20	12	31	1.90
18627933--18627971	20	2.0	20	84	0	51	38	0	2	58	1.12
18632026--18632089	30	2.1	31	82	2	76	45	7	0	46	1.32
18632192--18632229	3	12.7	3	94	0	67	63	0	2	34	1.09
18632194--18632281	9	9.8	9	78	11	65	57	3	2	36	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18632613--18632881	46	5.8	46	98	0	511	31	26	6	35	1.82
18634118--18634165	17	2.9	17	90	3	71	54	18	0	27	1.44
18657340--18657364	4	6.2	4	100	0	50	48	0	0	52	1.00
18665841--18665907	3	22.3	3	100	0	134	67	0	0	32	0.91
18679397--18679456	29	2.1	29	100	0	120	31	16	3	48	1.63
18679888--18680026	46	3.0	46	97	0	260	28	27	9	35	1.88
18681266--18681312	19	2.5	19	80	10	51	36	4	4	55	1.39
18681343--18681406	29	2.2	29	88	5	94	34	0	4	60	1.17
18681365--18681424	16	3.9	16	70	8	54	31	0	3	65	1.09
18681365--18681444	36	2.2	35	82	8	90	35	0	2	62	1.09
18681410--18681461	20	2.6	19	79	11	59	44	0	1	53	1.11
18688775--18688842	33	2.1	33	100	0	136	11	17	58	11	1.62
18689959--18690026	30	2.3	31	85	10	88	55	1	7	35	1.37
18692770--18692808	17	2.2	17	86	9	51	61	0	2	35	1.10
18702391--18702424	5	6.8	5	96	0	59	76	20	2	0	0.92
18706798--18707043	124	2.0	123	84	5	318	32	15	18	32	1.92
18721581--18721607	8	3.4	8	100	0	54	11	11	0	77	0.99
18725104--18725152	25	2.0	25	91	0	80	30	4	18	46	1.67
18734906--18734935	2	15.0	2	92	0	51	53	0	0	46	1.00
18741386--18741410	12	2.1	12	100	0	50	24	36	24	16	1.94
18741423--18741931	131	3.9	131	99	0	991	36	23	17	22	1.95
18744139--18744168	2	15.5	2	93	6	53	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18748100--18748140	21	2.0	21	85	9	57	65	0	0	34	0.93
18748340--18749475	567	2.0	568	99	0	2256	31	13	11	43	1.79
18749679--18749729	26	2.0	26	84	7	68	52	7	13	25	1.67
18755202--18755272	36	2.0	36	94	0	124	47	12	11	28	1.76
18768539--18768589	20	2.6	19	80	17	68	56	1	0	41	1.10
18770923--18770956	15	2.3	15	90	10	52	32	0	2	64	1.08
18785969--18786037	31	2.2	31	86	0	93	49	5	2	42	1.41
18796432--18796468	14	2.6	15	79	12	51	62	0	0	37	0.96
18798390--18798465	31	2.5	30	80	4	98	40	5	6	47	1.52
18817283--18817337	24	2.3	24	93	0	92	16	29	18	36	1.92
18817283--18817365	24	3.4	26	83	9	86	15	25	19	39	1.91
18818824--18818962	46	3.0	46	85	2	181	30	23	10	36	1.87
18821058--18821094	17	2.2	17	95	0	65	24	2	21	51	1.61
18821635--18821746	46	2.4	46	93	0	197	32	8	30	28	1.88
18822094--18822187	46	2.0	46	87	0	134	30	26	8	34	1.86
18825714--18825773	29	2.1	29	87	6	88	25	0	6	68	1.14
18825811--18825868	20	2.9	20	73	14	57	46	5	1	46	1.35
18828244--18828295	26	2.0	25	82	10	61	59	9	1	28	1.40
18839842--18839925	42	2.0	42	97	0	159	50	13	11	25	1.75
18840265--18840299	1	35.0	1	100	0	70	100	0	0	0	0.00
18840854--18840926	27	2.6	29	83	10	82	39	23	6	30	1.81
18850041--18850074	17	2.0	17	88	0	50	64	0	2	32	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18850836--18850926	39	2.4	38	79	3	103	25	5	19	49	1.70
18861469--18861518	20	2.5	20	90	6	75	10	38	16	36	1.82
18862308--18862378	27	2.6	27	77	0	70	26	25	28	19	1.99
18862994--18863070	39	2.0	39	97	0	145	37	0	10	51	1.36
18867691--18867748	30	1.9	31	93	6	102	18	43	0	37	1.51
18867854--18867912	30	1.9	31	86	3	84	20	38	0	40	1.53
18868004--18868035	17	1.9	17	93	6	57	28	18	0	53	1.45
18869407--18869440	17	1.9	18	94	5	61	35	0	0	64	0.94
18885561--18885629	27	2.5	28	95	2	122	39	10	0	50	1.36
18885766--18885835	19	3.7	19	82	3	97	37	10	0	52	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135