genome.fa.s8.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  86  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33113164--33113194	12	2.6	12	94	0	53	58	12	0	29	1.35
33115392--33115431	20	2.0	20	85	0	53	62	10	5	22	1.46
33116896--33116921	4	6.5	4	100	0	52	23	0	0	76	0.78
33123883--33123944	5	12.6	5	71	21	51	77	3	19	0	0.90
33123882--33123945	25	2.6	24	90	9	94	76	3	20	0	0.92
33123884--33123945	29	2.1	29	85	5	81	75	3	20	0	0.94
33124802--33124910	41	2.8	38	79	10	121	26	14	22	36	1.93
33126865--33126900	18	2.0	18	89	10	56	66	5	0	27	1.13
33126869--33127178	10	32.4	9	66	18	51	63	4	2	29	1.27
33126927--33127048	17	6.8	18	73	20	78	63	2	2	31	1.21
33126928--33127028	8	11.5	8	73	16	69	65	1	2	29	1.18
33127107--33127183	19	4.0	20	71	17	63	61	2	3	32	1.28
33127644--33127695	23	2.3	23	80	9	63	36	1	1	59	1.19
33127644--33127693	22	2.3	21	80	13	57	36	2	2	60	1.20
33127780--33127819	21	2.0	20	85	5	53	27	5	0	67	1.11
33128362--33128395	17	1.9	18	88	5	52	11	8	8	70	1.34
33131146--33131331	50	3.7	50	91	2	266	28	16	25	29	1.96
33132445--33132496	24	2.2	24	89	0	77	55	9	1	32	1.43
33134156--33134246	44	2.1	44	87	4	130	27	10	13	48	1.75
33139763--33139985	45	5.0	45	80	8	251	28	19	22	29	1.98
33139777--33139985	89	2.4	88	87	0	310	27	19	23	29	1.98
33142259--33142323	32	2.0	32	100	0	130	33	21	6	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33168001--33168117	25	4.7	25	74	13	91	32	23	25	18	1.97
33169917--33169958	22	1.9	22	85	9	59	69	9	2	19	1.28
33171155--33171197	21	2.0	23	81	9	54	44	11	11	32	1.77
33171229--33171273	21	2.1	22	84	12	58	66	8	11	13	1.44
33171925--33171970	21	2.1	22	84	4	58	36	15	8	39	1.78
33174067--33174246	34	5.3	34	85	2	227	39	16	25	18	1.91
33174088--33174180	17	5.5	17	65	14	57	39	15	26	18	1.90
33174087--33174250	69	2.4	68	88	1	238	39	17	25	17	1.91
33175211--33175242	8	4.0	8	100	0	64	25	0	0	75	0.81
33177122--33177161	17	2.3	18	86	4	55	52	15	2	30	1.55
33180279--33180330	26	2.0	26	96	0	95	34	9	5	50	1.59
33180341--33180384	22	2.0	22	100	0	88	31	18	22	27	1.97
33181192--33181605	106	3.9	106	89	1	612	33	19	17	29	1.95
33189966--33190028	31	2.0	31	100	0	126	38	20	6	34	1.78
33191565--33192254	345	2.0	345	100	0	1380	30	17	17	34	1.93
33194974--33194999	12	2.2	12	100	0	52	7	15	30	46	1.74
33195005--33195138	39	3.4	40	78	5	141	38	20	20	20	1.94
33195162--33195487	41	8.0	41	93	1	507	16	23	33	26	1.96
33195843--33195879	14	2.6	14	91	0	65	24	0	29	45	1.53
33196172--33196231	14	4.3	13	81	12	66	26	0	40	33	1.57
33196172--33196231	28	2.1	28	85	11	79	26	0	40	33	1.57
33197201--33197257	30	1.9	30	85	0	78	45	17	24	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33200423--33200455	6	5.0	7	85	14	52	45	9	0	45	1.35
33200421--33200455	13	2.7	13	100	0	70	42	8	0	48	1.33
33200605--33200806	43	4.7	43	92	0	314	21	16	32	28	1.96
33200865--33200909	22	2.1	21	91	4	72	42	28	17	11	1.84
33203380--33203455	35	2.2	35	87	0	107	22	27	23	26	1.99
33216662--33216721	28	2.1	28	100	0	120	40	10	21	28	1.85
33221201--33221243	18	2.4	18	80	7	52	46	2	0	51	1.13
33225286--33225362	38	2.0	38	100	0	154	28	11	18	41	1.85
33243943--33243983	20	2.0	20	90	0	64	34	0	0	65	0.93
33249545--33249589	24	1.9	24	95	4	83	64	17	4	13	1.44
33251518--33251552	18	1.9	19	88	11	56	62	0	0	37	0.95
33254335--33254394	15	4.0	14	74	20	50	48	8	1	41	1.43
33255530--33255595	28	2.4	28	84	2	89	51	7	10	30	1.64
33267348--33267388	21	2.0	21	90	0	64	14	68	0	17	1.22
33267345--33267393	24	2.0	24	92	0	80	16	67	0	16	1.24
33267345--33267409	6	10.8	6	86	0	67	16	64	1	16	1.37
33267455--33267517	15	4.2	15	79	0	63	14	63	3	19	1.43
33267459--33267518	30	2.0	30	86	0	84	13	63	3	20	1.43
33267459--33267517	9	6.6	9	77	11	50	13	64	3	18	1.42
33267527--33267568	12	3.5	12	83	0	57	28	45	11	14	1.80
33267588--33267637	6	8.3	6	84	0	55	12	66	0	22	1.24
33267674--33267720	24	2.0	24	91	8	78	38	38	6	17	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33267724--33267779	15	3.7	15	82	0	58	14	62	0	23	1.31
33273309--33273389	19	4.3	19	73	21	71	32	0	3	64	1.11
33273299--33273373	37	2.0	37	84	5	98	29	1	4	65	1.19
33273289--33273380	48	1.9	47	80	12	107	29	1	4	65	1.19
33273310--33273419	29	3.8	30	76	14	90	30	0	4	63	1.20
33273398--33273451	27	2.0	27	85	7	74	33	0	1	64	1.04
33273308--33273521	9	22.8	9	65	21	50	30	2	5	61	1.30
33273497--33273544	23	2.1	23	84	7	62	22	2	4	70	1.15
33279114--33279142	2	14.5	2	100	0	58	48	0	0	51	1.00
33298724--33298763	18	2.1	18	86	9	53	62	0	0	37	0.95
33298985--33299032	24	2.0	25	87	4	71	72	4	0	22	1.01
33301162--33301214	24	2.2	25	80	16	67	26	1	5	66	1.25
33306771--33307902	569	2.0	569	96	0	2104	26	19	23	31	1.98
33311762--33311804	19	2.2	20	88	8	63	37	0	23	39	1.55
33312457--33312526	26	2.7	26	90	0	113	10	27	24	38	1.87
33312853--33312929	38	2.0	38	100	0	154	37	10	18	33	1.85
33313934--33314037	52	2.0	52	100	0	208	28	23	25	23	1.99
33314560--33314592	15	2.2	15	94	0	57	57	0	36	6	1.23
33315051--33315239	95	2.0	95	100	0	378	39	20	15	24	1.92
33316266--33316366	51	2.0	51	98	0	193	45	11	15	26	1.81
33317602--33318133	263	2.0	264	94	2	946	39	14	9	35	1.80
33321469--33322109	320	2.0	321	99	0	1275	34	16	14	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33325116--33325145	3	10.3	3	92	7	53	0	0	63	36	0.95
33327700--33327747	25	1.9	25	95	0	87	58	4	16	20	1.55
33328790--33328848	27	2.2	27	78	0	64	55	1	1	40	1.20
33329226--33329294	11	6.4	10	79	14	75	24	27	1	46	1.61
33329226--33329294	22	3.2	21	86	10	86	24	27	1	46	1.61
33329339--33329371	13	2.5	13	90	9	50	33	0	0	66	0.92
33331131--33331173	18	2.4	18	88	0	59	18	27	9	44	1.80
33331415--33331475	21	2.9	21	85	4	61	29	42	21	6	1.78
33334852--33335259	125	3.3	126	91	1	633	26	20	19	33	1.96
33335292--33335595	96	3.2	93	80	4	304	39	18	4	37	1.71
33337371--33337400	12	2.6	12	94	5	53	73	0	0	26	0.84
33337769--33337814	19	2.4	19	85	0	56	50	0	10	39	1.38
33338118--33338181	31	2.2	30	81	13	71	32	9	4	53	1.54
33341693--33341722	12	2.5	12	94	0	51	6	43	26	23	1.78
33341770--33341985	65	3.3	65	82	3	254	25	22	26	25	2.00
33341998--33342262	133	2.0	133	94	1	469	27	26	20	25	1.99
33346879--33346949	24	3.0	24	85	4	81	14	28	25	32	1.94
33346890--33346968	24	3.2	25	83	5	83	16	25	24	34	1.95
33352555--33352689	54	2.5	54	87	4	202	27	30	23	18	1.98
33355474--33355662	95	2.0	95	93	0	324	37	4	21	36	1.73
33356121--33356180	12	5.2	12	75	18	56	48	1	1	48	1.21
33356349--33356398	25	2.0	24	84	7	64	44	8	10	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33356461--33356720	129	2.0	131	96	1	488	32	15	23	28	1.95
33357547--33359485	973	2.0	973	100	0	3878	36	16	10	36	1.83
33362156--33362213	30	1.9	30	89	0	89	41	3	24	31	1.71
33362917--33362974	30	1.9	30	89	0	89	31	24	3	41	1.71
33367630--33367679	25	2.0	25	84	7	66	38	10	8	44	1.68
33367735--33367792	12	5.0	12	74	19	52	48	1	1	48	1.22
33367848--33367897	25	2.0	24	84	7	64	44	8	10	38	1.68
33372565--33372622	30	1.9	30	89	0	89	41	3	24	31	1.71
33372960--33373208	50	4.8	50	83	3	291	26	21	28	22	1.99
33379624--33379910	87	3.3	84	75	12	262	37	16	10	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135