genome.fa.s8.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  17  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7026106--7026160	16	3.4	16	80	5	58	40	5	23	30	1.77
7036400--7036433	3	11.3	3	93	0	50	5	0	61	32	1.20
7036387--7036421	15	2.3	15	95	0	61	11	2	54	31	1.51
7036400--7036436	12	3.1	12	88	0	56	8	0	59	32	1.27
7036453--7036588	27	5.0	27	96	0	245	11	21	28	38	1.87
7036474--7036573	12	7.6	12	69	18	65	12	23	27	38	1.90
7039657--7039828	48	3.6	48	90	0	227	22	29	21	26	1.99
7045001--7045041	21	2.0	21	85	0	55	24	36	9	29	1.87
7053858--7053893	18	2.0	18	100	0	72	50	11	5	33	1.61
7053991--7054042	22	2.3	23	83	9	63	50	5	0	44	1.26
7054680--7054733	22	2.5	22	78	6	65	61	0	0	38	0.96
7058792--7058831	21	2.1	19	86	13	55	72	2	17	7	1.19
7059613--7059876	131	2.0	132	91	3	435	23	23	21	30	1.99
7059702--7059876	44	4.0	43	68	9	129	22	23	21	32	1.98
7073146--7073192	22	2.2	21	88	3	67	65	8	21	4	1.37
7077794--7077826	8	4.0	8	96	4	57	63	0	0	36	0.95
7082756--7082800	20	2.2	20	88	0	63	35	2	4	57	1.31
7082774--7082826	12	4.4	12	81	9	63	41	7	0	50	1.30
7083380--7083404	12	2.1	12	100	0	50	24	8	32	36	1.84
7087861--7087920	31	2.0	30	87	9	86	50	1	1	46	1.21
7088592--7088619	3	9.3	3	100	0	56	35	32	0	32	1.58
7088586--7088900	153	2.1	154	93	1	544	28	20	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7090266--7090306	8	5.1	8	80	19	50	73	0	0	26	0.84
7090328--7090368	21	2.0	20	90	4	64	75	2	2	19	1.03
7090328--7090374	21	2.4	19	83	13	60	72	2	2	23	1.06
7094091--7094136	23	2.0	23	86	0	65	39	23	13	23	1.90
7094722--7094819	48	2.0	48	90	3	153	25	37	5	31	1.78
7098725--7098856	50	2.6	50	83	2	149	25	23	28	22	2.00
7102552--7102743	96	2.0	96	100	0	384	58	6	17	17	1.59
7104733--7104765	12	2.6	13	90	4	50	60	12	18	9	1.57
7105569--7105597	14	2.1	14	93	6	51	58	0	6	34	1.25
7105975--7106001	14	1.9	14	100	0	54	74	7	7	11	1.23
7117876--7118017	35	4.1	35	82	0	167	39	29	11	19	1.87
7121031--7121086	25	2.2	25	87	0	76	62	7	0	30	1.22
7121111--7121185	11	6.8	11	75	6	62	42	0	34	22	1.54
7121497--7121554	26	2.2	24	77	16	62	58	0	6	34	1.25
7129137--7129301	87	1.9	86	83	3	215	26	15	21	36	1.93
7137097--7137141	18	2.4	18	88	3	63	57	0	2	40	1.11
7137170--7137221	20	2.7	20	72	3	61	55	3	3	36	1.36
7137283--7137334	19	2.8	18	76	2	59	32	5	1	59	1.32
7147590--7147614	12	2.1	12	100	0	50	60	0	8	32	1.26
7147790--7147814	12	2.1	12	100	0	50	76	0	0	24	0.80
7149833--7149866	15	2.2	16	89	5	52	67	0	0	32	0.91
7154159--7154190	15	2.1	15	94	0	55	15	6	9	68	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7162449--7162612	43	3.9	42	81	4	159	28	26	15	28	1.96
7164426--7164458	17	1.9	17	100	0	66	30	18	24	27	1.98
7164428--7164465	17	2.2	17	90	0	58	28	23	26	21	1.99
7170185--7170221	2	18.0	2	88	5	56	45	0	5	48	1.25
7170967--7171030	31	2.1	31	88	5	94	53	10	12	23	1.70
7170983--7171050	29	2.3	28	83	16	84	55	8	10	25	1.62
7171672--7171739	32	2.1	32	94	0	118	25	20	8	45	1.80
7172068--7172180	59	1.9	59	83	3	145	50	14	14	21	1.77
7175763--7175796	3	11.3	3	100	0	68	67	0	0	32	0.91
7178143--7178858	132	5.4	132	96	1	1292	28	26	17	27	1.98
7178283--7178669	88	4.4	89	71	8	297	28	26	17	27	1.97
7178859--7179227	87	4.3	87	95	0	659	24	22	22	30	1.99
7180205--7180261	17	3.3	17	83	14	64	0	15	5	78	0.91
7180221--7180258	12	3.2	12	85	10	51	0	13	5	81	0.85
7180203--7180258	24	2.3	24	81	9	60	0	16	5	78	0.92
7185357--7185401	18	2.5	18	100	0	90	8	6	42	42	1.62
7185504--7185541	3	12.7	3	100	0	76	68	0	0	31	0.90
7189191--7189234	21	2.1	21	100	0	88	36	18	4	40	1.71
7189199--7189244	21	2.2	21	84	0	56	45	13	8	32	1.73
7189597--7189826	43	5.4	42	84	3	282	30	32	18	19	1.95
7189794--7190063	133	2.0	137	97	2	512	35	12	7	44	1.70
7194758--7194790	14	2.3	15	94	5	59	36	33	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7195135--7195366	41	5.7	41	95	0	401	29	25	21	22	1.99
7195396--7195489	40	2.3	40	92	0	152	18	20	23	38	1.93
7196940--7196988	11	4.4	11	86	2	71	16	34	0	48	1.46
7198547--7198595	11	4.4	11	86	2	71	16	34	0	48	1.46
7198681--7198708	13	2.2	13	100	0	56	28	0	0	71	0.86
7200280--7200319	18	2.2	18	95	0	71	22	30	7	40	1.81
7200573--7200606	15	2.3	15	89	0	50	44	32	23	0	1.54
7200839--7200984	25	5.8	25	93	3	258	43	0	14	41	1.45
7204154--7204499	123	2.8	124	95	0	604	32	22	16	28	1.95
7207762--7207810	21	2.3	22	85	3	64	28	4	6	61	1.38
7217384--7217485	9	11.2	9	67	20	52	63	3	1	30	1.23
7217415--7217463	24	2.0	24	88	7	73	61	2	0	36	1.08
7217780--7217873	9	10.4	9	70	16	52	28	3	2	65	1.19
7217778--7217825	19	2.5	20	80	12	57	33	2	2	62	1.18
7218336--7218438	41	2.6	41	89	6	151	24	8	21	45	1.80
7219613--7219721	3	37.3	3	80	9	127	33	3	0	62	1.19
7219796--7219847	3	17.3	3	100	0	104	32	0	0	67	0.91
7223549--7223600	26	2.0	25	85	3	68	9	25	48	17	1.77
7224330--7224385	26	2.2	25	84	9	69	28	10	1	58	1.41
7225292--7225335	19	2.4	18	85	11	54	15	11	9	63	1.51
7228684--7228740	17	3.2	18	85	7	64	70	0	21	8	1.14
7228684--7228752	17	3.9	19	83	9	60	72	0	20	7	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7228711--7228754	6	7.7	6	85	7	56	77	0	22	0	0.77
7228831--7228949	42	2.8	41	81	14	136	32	14	28	24	1.94
7232032--7232134	3	35.3	3	76	9	97	33	3	1	60	1.26
7232033--7232134	53	1.9	52	84	9	136	34	3	1	59	1.27
7232209--7232248	3	13.3	3	100	0	80	32	0	0	67	0.91
7232239--7232294	26	2.2	25	87	9	78	26	12	1	58	1.44
7239398--7239441	23	2.0	21	86	13	61	38	0	0	61	0.96
7240413--7240478	35	1.9	33	87	6	96	45	12	7	34	1.70
7243488--7243661	86	2.0	87	98	1	341	35	10	4	49	1.58
7244136--7244165	15	2.1	14	93	6	51	66	6	20	6	1.38
7248446--7248540	39	2.4	40	79	8	106	34	22	17	25	1.96
7248604--7248852	41	6.1	41	77	10	249	24	22	22	31	1.98
7248578--7248839	82	3.2	82	82	4	305	24	20	21	32	1.98
7248578--7248852	123	2.2	123	82	4	331	25	21	21	31	1.98
7249239--7249271	14	2.3	15	89	5	50	33	0	30	36	1.58
7249592--7249660	8	8.9	8	81	9	81	17	0	46	36	1.48
7249619--7249670	24	2.2	24	86	6	70	15	1	48	34	1.56
7249684--7249891	104	2.0	104	99	0	407	40	5	6	47	1.52
7250200--7250229	2	14.5	2	93	6	51	50	0	3	46	1.18
7250836--7250867	10	3.2	10	95	0	55	78	0	3	18	0.89
7250886--7250952	20	3.2	21	75	14	50	43	7	0	49	1.31
7253942--7254011	25	2.8	25	82	8	97	47	20	0	32	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7253942--7254024	9	9.7	9	76	10	84	44	20	1	33	1.59
7260757--7260853	26	3.9	24	73	13	81	31	17	23	26	1.97
7265309--7265336	7	4.0	7	100	0	56	28	0	0	71	0.86
7267203--7267254	24	2.2	24	89	0	77	55	9	1	32	1.43
7268908--7268959	24	2.2	24	89	0	77	55	9	1	32	1.43
7270384--7270487	41	2.4	44	80	14	133	36	3	8	50	1.51
7270466--7270496	9	3.6	9	91	8	55	35	0	0	64	0.94
7273425--7273696	126	2.1	127	87	4	381	31	15	15	37	1.90
7273746--7273872	34	3.8	33	79	12	125	48	14	0	36	1.45
7300598--7300812	107	2.0	108	98	0	414	42	4	8	44	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135