genome.fa.s8.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr9
Parameters: 2 7 7 80 10 50 1000
Length:  48574783

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  45  of  135  ( 16172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17766381--17766564	91	2.0	92	98	1	361	40	15	10	33	1.82
17770329--17770403	40	1.9	38	81	10	89	40	1	4	54	1.27
17770322--17770428	38	2.8	37	73	14	94	42	0	2	54	1.21
17775464--17775507	16	2.8	16	76	13	54	56	6	0	36	1.26
17788520--17788558	19	2.1	18	86	13	53	10	10	15	64	1.50
17822008--17822091	39	2.2	37	76	4	87	65	2	1	30	1.13
17824837--17824900	21	3.4	21	68	28	70	10	25	7	56	1.60
17824839--17824909	35	2.0	35	97	0	133	8	26	9	54	1.61
17846147--17846181	2	17.5	2	100	0	70	51	0	0	48	1.00
17848254--17848305	25	2.1	25	82	10	63	63	5	1	28	1.28
17854089--17854242	79	1.9	81	94	2	276	28	14	17	38	1.90
17859730--17859760	16	1.9	16	100	0	62	61	6	32	0	1.21
17878362--17878631	127	2.1	127	99	0	531	29	11	15	42	1.83
17885455--17885639	46	4.0	46	94	0	316	28	28	9	33	1.89
17886868--17886915	17	2.9	17	87	3	62	54	20	0	25	1.45
17896948--17896973	6	4.3	6	100	0	52	30	30	19	19	1.96
17916125--17916167	19	2.3	19	96	4	79	34	0	16	48	1.46
17919465--17919489	12	2.1	12	100	0	50	52	0	0	48	1.00
17920117--17920309	96	2.0	97	98	1	379	37	10	11	40	1.75
17921112--17921173	24	2.5	25	74	10	65	46	4	0	48	1.23
17926748--17926773	3	8.7	3	100	0	52	69	0	0	30	0.89
17939794--17939844	25	2.0	25	92	7	86	29	5	41	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17939830--17939871	2	21.0	2	100	0	84	50	0	50	0	1.00
17946695--17946743	23	2.1	23	84	3	62	55	2	4	38	1.31
17950132--17950175	21	2.1	21	82	0	52	11	38	34	15	1.84
17968253--17968359	56	1.9	56	86	3	153	42	7	5	44	1.56
17971126--17971166	18	2.2	18	87	12	57	60	9	7	21	1.52
17974572--17975304	366	2.0	367	99	0	1459	44	7	12	35	1.70
17979404--17979428	1	25.0	1	100	0	50	0	0	100	0	0.00
17984127--17984163	15	2.3	17	90	9	60	32	5	0	62	1.18
17989031--17989154	61	2.0	61	96	0	230	34	6	20	38	1.78
18011572--18011728	78	2.0	78	96	0	287	48	24	13	14	1.79
18027654--18028602	108	8.8	108	100	0	1898	43	5	8	42	1.58
18029116--18029259	42	3.3	43	86	8	188	30	21	22	25	1.99
18034830--18035641	115	7.1	115	98	0	1509	31	20	18	29	1.96
18036114--18036174	21	2.9	21	76	13	63	47	31	3	18	1.64
18036639--18036782	75	1.9	77	85	2	202	30	26	25	17	1.97
18036886--18037078	72	2.7	70	78	4	199	28	25	21	24	1.99
18048809--18048858	21	2.3	22	86	3	66	54	6	2	38	1.37
18049714--18049763	21	2.3	22	86	3	66	54	6	2	38	1.37
18048312--18050121	905	2.0	905	99	0	3595	40	8	10	40	1.70
18058567--18058626	5	12.2	5	84	10	79	36	0	1	61	1.06
18072667--18072715	6	8.7	6	78	13	50	20	36	12	30	1.89
18072681--18072721	18	2.3	18	86	0	55	24	36	9	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18077162--18077884	359	2.0	359	99	0	1419	33	20	13	33	1.91
18079836--18079885	20	2.5	19	78	9	55	60	2	2	36	1.20
18080024--18080086	14	4.4	14	78	11	65	55	3	1	39	1.25
18080308--18080371	19	3.4	19	81	16	71	25	7	1	65	1.28
18080330--18080371	10	4.3	10	81	6	50	21	7	2	69	1.25
18080997--18081278	142	2.0	141	93	0	483	46	3	4	45	1.42
18081411--18081470	13	4.6	13	78	0	57	41	16	0	41	1.48
18081757--18081837	40	2.0	40	90	0	126	43	16	2	38	1.61
18084027--18084065	11	3.5	11	78	0	51	17	12	10	58	1.61
18084024--18084071	22	2.2	21	85	7	69	18	10	10	60	1.57
18092711--18092735	3	8.3	3	100	0	50	68	0	0	32	0.90
18093232--18093257	6	4.3	6	100	0	52	46	0	53	0	1.00
18094405--18094471	35	1.9	35	93	0	116	43	8	20	26	1.82
18095334--18095358	2	12.5	2	100	0	50	52	48	0	0	1.00
18107779--18107803	2	12.5	2	100	0	50	52	0	0	48	1.00
18110915--18110948	18	2.0	17	88	11	52	50	11	0	38	1.39
18112876--18112902	2	13.5	2	100	0	54	0	48	0	51	1.00
18118207--18118237	16	1.9	16	93	0	53	12	0	29	58	1.35
18118244--18118299	10	5.4	10	75	12	51	19	0	3	76	0.93
18118334--18118366	15	2.2	15	89	10	50	33	24	6	36	1.80
18120811--18120890	37	2.1	38	86	2	108	22	18	22	36	1.95
18122718--18122778	28	2.2	28	100	0	122	70	0	19	9	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18137474--18137775	155	2.0	153	82	4	374	33	7	6	52	1.56
18137745--18138178	154	2.8	154	98	0	825	52	5	10	31	1.58
18138304--18138342	19	2.1	18	85	4	51	25	0	7	66	1.18
18139661--18139703	18	2.3	19	80	8	61	34	0	0	65	0.93
18141276--18141322	23	2.0	24	88	8	71	34	2	0	63	1.06
18141289--18141337	23	2.1	24	85	11	66	38	2	0	59	1.09
18141500--18141532	15	2.1	17	88	11	52	27	6	0	66	1.15
18141957--18142000	20	2.2	20	83	0	52	18	4	31	45	1.69
18149770--18149837	23	3.0	23	93	0	118	44	1	7	47	1.40
18149773--18149851	13	6.5	13	72	16	62	43	1	8	46	1.43
18153394--18153429	18	2.0	18	100	0	72	44	0	5	50	1.25
18169800--18169824	7	3.6	7	100	0	50	56	0	0	44	0.99
18170941--18171017	38	2.0	38	100	0	154	18	19	28	33	1.95
18171158--18171198	18	2.3	18	82	0	55	48	7	14	29	1.71
18179358--18179452	31	3.1	30	76	11	88	37	11	11	38	1.78
18192900--18192948	24	2.0	24	84	7	64	20	10	2	67	1.30
18197687--18197800	58	2.0	58	92	3	194	22	17	21	38	1.93
18207791--18207824	15	2.3	15	89	0	50	67	8	20	2	1.31
18208161--18208190	3	10.0	3	100	0	60	0	33	0	66	0.92
18217230--18217255	5	5.2	5	100	0	52	42	19	19	19	1.90
18218519--18218549	9	3.4	9	90	0	53	38	22	12	25	1.90
18219151--18219225	22	3.3	23	74	17	75	49	1	2	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18219380--18219432	21	2.5	21	87	0	70	30	33	9	26	1.88
18232317--18232370	19	2.7	19	82	5	54	29	3	1	64	1.21
18235054--18235115	2	31.0	2	86	0	88	0	43	4	51	1.23
18235056--18235114	12	4.9	12	95	0	100	0	42	5	52	1.23
18243081--18243115	16	2.2	16	90	5	54	31	0	0	68	0.90
18252104--18252154	26	2.0	26	92	0	84	33	11	11	43	1.78
18256210--18256298	42	2.1	42	81	4	99	46	29	17	6	1.74
18268611--18268639	14	2.0	15	93	6	51	13	34	17	34	1.89
18269344--18269387	14	3.1	14	93	0	70	25	15	25	34	1.95
18269576--18269618	19	2.2	20	84	12	54	53	4	4	37	1.43
18269589--18269637	20	2.7	19	79	14	50	63	4	2	30	1.24
18271446--18271491	20	2.2	21	84	3	67	67	0	4	28	1.10
18276136--18276161	12	2.2	12	100	0	52	26	7	0	65	1.20
18280640--18280688	21	2.3	20	80	19	55	30	2	8	59	1.38
18281859--18282050	94	2.0	95	98	1	377	41	12	7	38	1.71
18282203--18282251	21	2.3	20	80	19	55	30	2	8	59	1.38
18289439--18289480	2	20.5	2	86	13	59	47	0	4	47	1.23
18292309--18292378	34	2.1	34	83	5	88	34	4	0	61	1.16
18292437--18292496	31	1.9	31	93	6	104	55	8	1	35	1.40
18301378--18301479	50	2.0	50	94	3	179	45	24	6	23	1.77
18308603--18308648	25	1.9	24	82	8	58	47	2	0	50	1.13
18321737--18321767	15	2.1	15	94	5	55	0	9	0	90	0.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18321740--18321768	8	3.8	8	95	4	51	0	6	0	93	0.36
18323396--18323426	16	2.0	16	93	6	55	41	0	6	51	1.27
18327309--18327352	18	2.4	18	85	7	63	63	4	0	31	1.14
18327538--18327589	25	2.0	26	85	3	70	55	1	3	38	1.29
18327538--18327592	26	2.1	26	83	6	67	54	1	3	40	1.28
18328202--18328234	14	2.4	14	90	5	50	3	27	0	69	1.03
18337525--18337558	16	2.1	17	88	5	52	67	2	0	29	1.05
18341349--18342678	668	2.0	668	100	0	2660	38	9	17	35	1.82
18342291--18343709	714	2.0	714	99	0	2822	34	11	20	33	1.89
18346858--18346902	20	2.3	20	80	3	56	68	0	31	0	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135