genome.fa.s12.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  100  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33233155--33233202	24	2.0	24	95	0	87	43	18	12	25	1.85
33233907--33233937	8	3.9	8	100	0	62	74	0	0	25	0.82
33240552--33240963	84	4.9	82	86	4	422	35	25	16	22	1.94
33240510--33240955	126	3.5	126	85	5	521	34	26	16	22	1.95
33249904--33249995	45	2.0	45	89	0	139	26	18	16	39	1.91
33252543--33252616	20	3.7	20	90	0	112	27	18	27	27	1.98
33255173--33255225	11	4.6	11	90	6	79	16	5	1	75	1.08
33255173--33255225	12	4.5	12	90	4	81	16	5	1	75	1.08
33256810--33256874	10	6.5	10	73	23	57	30	18	27	23	1.97
33256810--33256894	20	4.2	21	86	8	106	31	18	25	23	1.97
33256821--33256899	20	4.0	20	96	0	131	31	18	24	25	1.98
33263957--33264000	23	1.9	23	85	0	61	63	2	2	31	1.19
33267936--33267984	21	2.3	21	82	0	62	28	34	10	26	1.89
33273465--33273512	25	1.9	25	95	0	87	27	31	8	33	1.86
33281736--33281798	18	3.3	18	75	16	72	26	3	26	42	1.70
33283438--33283490	6	8.8	6	78	0	61	20	0	3	75	0.96
33283444--33283490	18	2.6	18	86	6	69	21	0	4	74	0.99
33287433--33287476	16	2.6	17	85	7	63	25	0	4	70	1.06
33289065--33289116	24	2.2	24	82	6	61	17	3	3	75	1.11
33289071--33289116	24	1.9	24	86	8	67	19	0	4	76	0.96
33293768--33293817	19	2.6	19	78	9	57	44	2	12	42	1.53
33293808--33293852	22	2.1	21	84	12	56	48	4	8	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33297053--33297102	21	2.2	23	82	10	59	44	30	2	24	1.65
33297732--33297764	13	2.5	13	95	0	57	24	21	0	54	1.45
33297758--33297814	13	4.5	13	77	2	53	31	22	3	42	1.71
33297857--33297917	25	2.4	25	83	0	86	32	24	18	24	1.97
33301814--33301847	17	2.0	17	88	11	52	38	0	47	14	1.45
33316347--33316382	17	2.1	18	89	5	56	47	0	2	50	1.15
33318336--33318383	11	4.5	11	76	10	55	33	4	14	47	1.63
33326680--33326708	8	3.6	8	100	0	58	24	0	0	75	0.80
33329056--33329240	27	6.9	27	79	7	141	39	18	20	21	1.93
33329051--33329241	54	3.5	55	74	12	164	38	19	19	21	1.93
33329068--33329360	27	10.9	27	76	8	120	37	18	19	23	1.94
33329221--33329360	54	2.6	54	80	5	165	36	20	18	25	1.95
33329647--33329893	32	7.7	32	76	11	202	22	20	21	36	1.95
33329647--33329885	64	3.7	62	77	11	225	21	19	21	37	1.95
33329915--33329969	22	2.5	22	73	5	58	21	23	12	41	1.88
33333941--33334083	42	3.4	42	86	0	180	28	20	22	28	1.98
33336185--33336259	19	3.8	19	93	6	132	37	10	16	36	1.83
33336185--33336282	19	4.7	22	80	14	95	36	9	16	37	1.80
33344837--33344932	48	2.0	48	85	4	131	43	23	11	20	1.85
33344884--33344928	21	2.1	22	87	4	65	40	22	13	24	1.90
33357240--33357283	18	2.4	18	76	0	52	9	18	6	65	1.42
33357251--33357308	18	3.3	18	80	7	57	5	13	6	74	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33357267--33357308	6	7.2	6	81	5	50	2	14	4	78	1.01
33357304--33357351	21	2.3	21	100	0	96	12	29	0	58	1.35
33357348--33357389	22	2.0	21	85	4	57	7	23	2	66	1.28
33360536--33360646	55	2.0	56	98	1	215	33	21	10	34	1.88
33362519--33362559	16	2.6	16	84	3	57	9	19	2	68	1.29
33362606--33362672	28	2.6	26	78	17	68	5	20	2	70	1.22
33362606--33362660	27	2.0	26	86	13	76	5	23	1	69	1.19
33365108--33365162	21	2.4	22	76	14	58	41	16	16	25	1.88
33365820--33365871	27	1.9	27	96	0	95	21	23	15	40	1.91
33367957--33367991	18	1.9	18	88	11	54	22	20	0	57	1.41
33368021--33368105	18	4.4	18	67	18	55	7	23	5	63	1.42
33368074--33368107	6	5.7	6	85	0	50	2	20	0	76	0.92
33372423--33372477	22	2.8	18	78	21	58	56	10	0	32	1.34
33375703--33375754	22	2.3	23	81	12	65	40	25	9	25	1.85
33378167--33378306	54	2.6	54	94	1	244	22	25	19	32	1.97
33379847--33380049	63	3.1	63	63	29	152	38	9	4	47	1.56
33379838--33380052	71	3.1	71	63	20	184	39	9	4	46	1.55
33379767--33380129	134	2.7	136	93	3	631	41	7	5	46	1.54
33380272--33380297	12	2.2	12	100	0	52	57	19	0	23	1.40
33382230--33382271	12	3.4	12	93	3	66	16	2	9	71	1.23
33384894--33384936	20	2.2	20	86	0	59	27	9	16	46	1.77
33388029--33388061	10	2.9	12	82	17	52	51	33	0	15	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33388721--33388765	15	2.9	15	90	3	63	28	26	2	42	1.67
33400264--33400306	12	3.6	12	90	0	68	16	4	2	76	1.05
33401684--33401839	77	2.0	77	89	0	240	23	25	12	37	1.91
33405606--33405677	15	4.7	15	82	5	81	29	23	5	41	1.77
33406761--33406822	10	6.9	9	84	12	58	41	0	0	58	0.98
33406766--33406819	5	11.6	5	84	15	80	40	0	0	59	0.98
33407949--33408043	45	2.3	41	75	16	104	21	15	20	43	1.88
33407963--33408050	45	2.0	45	90	0	140	21	17	19	42	1.90
33408030--33408079	6	8.2	6	86	4	73	18	20	16	46	1.85
33415257--33415328	29	2.5	29	88	0	108	52	0	31	15	1.43
33418228--33418287	26	2.4	25	78	13	61	26	6	8	58	1.52
33418238--33418287	26	1.9	26	84	8	66	30	6	6	58	1.46
33418538--33418612	23	3.3	23	64	14	64	28	25	6	40	1.81
33418524--33418617	46	2.0	47	97	2	181	28	23	8	39	1.84
33430839--33430874	12	3.0	12	91	0	54	27	0	5	66	1.13
33434093--33434196	49	2.1	49	92	0	172	32	7	10	49	1.66
33436521--33436678	84	1.9	80	83	5	199	36	4	15	44	1.66
33443409--33443544	69	2.0	69	89	0	209	42	5	8	43	1.58
33449002--33449113	54	2.1	54	84	3	145	26	23	12	37	1.90
33449072--33449111	18	2.2	18	86	0	53	30	27	10	32	1.89
33456289--33456340	24	2.2	24	89	0	77	38	3	5	51	1.44
33457986--33458034	19	2.6	19	93	0	89	24	14	42	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33458452--33458480	12	2.5	12	94	5	51	75	0	24	0	0.80
33461690--33461728	17	2.3	17	100	0	78	17	41	5	35	1.72
33464845--33464986	50	2.8	50	83	0	194	21	27	22	28	1.99
33472912--33473144	50	4.7	50	85	1	290	22	28	22	26	1.99
33474813--33475058	50	4.8	50	80	3	242	23	27	21	27	1.99
33475703--33476042	169	2.0	169	95	0	608	36	19	19	25	1.95
33483174--33483359	93	2.0	93	98	0	363	32	10	15	42	1.80
33502767--33502800	9	4.0	9	85	14	54	11	11	11	64	1.50
33502767--33502799	16	2.1	16	100	0	66	12	12	12	63	1.52
33506521--33506683	43	3.8	43	80	6	152	30	25	18	25	1.98
33511862--33511906	20	2.3	19	84	7	54	24	33	11	31	1.90
33515985--33516027	21	2.0	21	86	8	61	11	11	34	41	1.78
33520312--33520339	14	2.0	14	100	0	56	28	28	7	35	1.84
33524065--33524195	25	5.3	24	85	8	149	23	23	22	30	1.99
33544395--33544476	41	2.0	42	88	7	123	48	8	3	39	1.51
33545236--33545269	6	5.7	6	85	0	50	79	0	0	20	0.73
33570844--33571228	192	2.0	191	91	4	632	23	14	20	41	1.89
33582033--33582094	32	1.9	32	87	6	90	27	19	22	30	1.98
33582072--33582134	29	2.2	29	82	5	74	36	14	17	31	1.90
33592913--33592937	10	2.5	10	100	0	50	16	32	0	52	1.44
33595711--33595754	23	1.9	23	95	0	79	31	4	4	59	1.38
33599666--33600093	27	15.9	27	83	1	511	41	21	17	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33600444--33600583	28	5.0	28	83	0	181	26	25	22	26	2.00
33601160--33601184	12	2.1	12	100	0	50	24	36	24	16	1.94
33601342--33601386	9	5.0	9	94	0	81	42	24	11	22	1.86
33602015--33602164	75	2.0	75	89	2	230	46	10	13	30	1.77
33610315--33610342	13	2.2	13	100	0	56	28	7	46	17	1.75
33611100--33611163	18	3.4	18	87	12	85	29	9	10	50	1.69
33614180--33614229	9	5.6	9	90	0	82	36	20	32	12	1.89
33615302--33615345	9	5.1	9	83	10	65	56	9	0	34	1.31
33615313--33615348	16	2.2	16	95	0	63	55	8	0	36	1.30
33615418--33615459	16	2.6	16	92	0	66	42	7	0	50	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128