genome.fa.s12.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  58  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18267674--18267898	27	8.4	27	81	1	166	25	20	19	34	1.96
18274627--18274828	100	2.0	101	99	0	397	32	11	14	40	1.83
18276307--18276335	9	3.0	10	90	10	51	10	6	0	82	0.83
18278449--18278507	27	2.1	28	81	3	66	44	8	1	45	1.44
18281113--18281175	31	2.0	31	100	0	126	41	6	19	33	1.76
18289946--18289989	20	2.2	20	84	8	54	65	9	0	25	1.21
18293215--18293258	21	2.1	21	83	8	54	9	27	13	50	1.72
18295944--18296137	27	7.2	27	84	6	225	22	15	19	42	1.89
18295944--18296137	81	2.4	81	86	3	266	22	15	19	42	1.89
18308570--18308709	20	7.0	21	70	15	89	17	31	18	32	1.94
18308539--18308779	40	6.0	40	82	1	277	17	29	17	35	1.93
18308539--18308779	120	2.0	120	87	1	349	17	29	17	35	1.93
18310349--18310414	25	2.6	25	80	0	78	34	19	22	22	1.96
18317572--18317641	25	2.8	25	74	8	79	31	27	18	22	1.97
18321894--18321964	27	2.6	27	84	4	90	28	26	22	22	1.99
18330631--18330661	16	1.9	16	93	0	53	29	16	19	35	1.93
18342236--18342264	2	14.5	2	100	0	58	48	0	0	51	1.00
18343877--18343957	15	5.4	15	80	0	81	28	19	24	27	1.99
18343885--18343958	30	2.5	30	88	0	103	29	22	21	25	1.99
18343965--18344188	24	9.5	24	71	9	138	37	15	19	28	1.92
18343990--18344167	24	7.5	23	71	10	144	36	15	19	28	1.92
18343966--18344188	48	4.7	46	83	7	268	37	15	19	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18344585--18344636	17	3.1	16	77	8	50	50	0	11	38	1.39
18346494--18346566	36	2.0	36	92	5	121	35	1	31	31	1.67
18353514--18353551	4	9.8	4	88	5	60	73	0	23	2	0.95
18353923--18353959	18	2.1	17	90	5	56	37	0	8	54	1.30
18357740--18357824	9	9.4	9	75	14	86	29	10	22	37	1.88
18372040--18372069	6	5.0	6	91	0	51	63	0	3	33	1.11
18382318--18382365	20	2.4	19	76	10	51	45	0	27	27	1.54
18382359--18382520	40	4.1	40	100	0	324	39	14	17	27	1.90
18382381--18382485	18	5.4	18	67	24	70	40	13	17	28	1.87
18396435--18396555	40	2.9	41	76	12	104	29	25	15	28	1.96
18405967--18406216	27	9.3	27	76	6	220	25	17	17	40	1.91
18405967--18406216	54	4.6	54	80	3	243	25	17	17	40	1.91
18405962--18406223	81	3.2	80	78	10	262	25	18	16	39	1.91
18409672--18409707	17	2.1	17	89	0	54	27	22	5	44	1.75
18410695--18410795	27	3.7	27	85	5	80	21	15	23	38	1.92
18410723--18410904	27	6.7	27	82	8	210	23	16	20	40	1.91
18414365--18414490	41	3.0	41	79	4	128	32	26	14	26	1.94
18415578--18415607	15	2.0	15	100	0	60	40	20	0	40	1.52
18418725--18418803	28	2.8	28	96	0	140	27	29	21	21	1.99
18425646--18425675	15	1.9	16	93	6	53	40	13	0	46	1.43
18427871--18427922	24	2.2	24	83	10	63	51	23	5	19	1.67
18442751--18442824	24	3.0	25	76	11	80	18	24	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18442751--18442874	50	2.5	50	82	3	144	22	21	22	33	1.98
18442801--18442878	25	3.1	25	67	10	61	25	20	20	33	1.97
18443027--18443088	31	2.1	30	82	17	76	45	8	17	29	1.77
18445121--18445304	51	3.7	50	77	8	162	26	19	24	29	1.98
18445121--18445304	102	1.8	100	87	4	271	26	19	24	29	1.98
18453349--18453490	40	3.5	40	80	9	155	19	28	17	33	1.95
18468850--18468883	16	2.1	16	88	0	50	58	11	5	23	1.55
18489709--18489743	16	2.1	18	89	10	56	40	0	17	42	1.49
18491017--18491415	27	14.9	27	79	3	394	42	20	18	19	1.90
18491017--18491415	53	7.5	53	78	6	378	42	20	18	19	1.90
18493031--18493182	53	2.8	54	77	7	166	41	18	19	20	1.91
18493000--18493183	80	2.3	81	77	6	196	41	18	19	20	1.91
18493031--18493183	27	5.7	27	75	9	143	41	18	19	20	1.91
18496598--18496793	50	3.8	50	77	4	185	22	28	20	28	1.99
18497893--18497925	11	3.0	11	95	0	57	63	6	9	21	1.45
18512801--18513042	27	9.0	27	85	0	313	42	21	20	15	1.89
18513147--18513219	26	2.8	27	85	4	87	16	21	23	38	1.93
18513175--18513225	26	2.0	26	92	0	84	13	21	25	39	1.90
18513999--18514104	28	3.8	28	85	0	149	23	25	21	29	1.99
18514072--18514142	33	2.1	34	84	7	92	26	25	21	26	1.99
18519960--18520036	23	3.7	23	66	28	64	29	2	20	46	1.64
18519959--18520097	39	3.6	39	89	0	206	33	3	17	45	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18539722--18539756	16	2.1	17	89	5	54	11	51	0	37	1.38
18542346--18542406	29	2.1	29	84	6	79	32	19	13	34	1.90
18543887--18544199	156	2.0	156	99	0	617	33	13	11	41	1.80
18546399--18546428	13	2.3	13	94	0	51	53	0	3	43	1.17
18549703--18549746	23	1.9	22	82	17	54	36	25	0	38	1.56
18549799--18549884	45	1.9	45	92	0	145	33	24	13	27	1.94
18549886--18550026	51	2.8	51	84	4	194	33	27	15	23	1.95
18549887--18550058	51	3.4	49	77	9	157	32	27	14	25	1.95
18553925--18554169	50	4.8	50	82	5	251	22	28	20	28	1.98
18559110--18559148	20	1.9	21	94	5	71	38	7	20	33	1.81
18571060--18571118	29	2.0	29	96	0	109	33	13	22	30	1.92
18571067--18571131	29	2.2	29	86	0	85	33	13	16	35	1.89
18571484--18571598	47	2.4	47	85	1	149	23	13	18	45	1.84
18591491--18591530	21	1.9	21	84	0	53	42	2	7	47	1.45
18593791--18593839	21	2.3	21	85	0	62	26	36	26	10	1.88
18593800--18593846	21	2.2	21	88	0	67	25	27	31	14	1.95
18594476--18594522	20	2.3	20	82	7	60	65	2	21	10	1.33
18599832--18599889	26	2.2	27	84	3	73	31	15	18	34	1.93
18600177--18600230	27	2.0	26	86	10	74	35	22	22	20	1.96
18607681--18607918	50	4.7	50	76	7	160	31	21	25	22	1.98
18609374--18609462	14	6.3	14	69	18	51	17	5	1	75	1.06
18609419--18609461	12	3.7	12	87	3	61	16	9	0	74	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18609437--18609479	13	2.9	15	80	20	54	13	9	2	74	1.16
18611042--18611080	18	2.2	18	85	0	51	7	5	7	79	1.05
18621960--18622234	27	10.2	26	86	3	343	19	18	21	40	1.91
18629979--18630013	16	2.1	17	89	5	54	37	0	51	11	1.38
18630423--18630591	91	1.9	91	96	0	311	46	5	2	44	1.42
18642445--18642677	79	3.0	77	84	4	295	30	17	30	21	1.96
18642445--18642677	39	5.9	39	84	4	288	30	17	30	21	1.96
18646974--18647043	25	2.8	25	78	2	79	30	14	21	34	1.93
18647086--18647210	40	3.0	41	88	3	171	51	3	12	32	1.56
18647194--18647286	13	6.9	13	75	16	66	44	3	17	35	1.65
18648945--18649090	73	2.0	73	95	0	265	30	21	20	27	1.98
18650793--18651035	50	4.8	50	78	4	229	27	20	27	23	1.99
18651227--18651274	20	2.4	21	76	13	57	56	6	25	12	1.59
18652403--18652557	41	3.8	40	81	5	170	47	2	14	35	1.58
18652439--18652501	13	4.7	13	74	14	56	55	1	12	30	1.47
18652458--18652513	28	2.0	28	85	0	76	48	1	14	35	1.54
18653821--18653874	21	2.6	21	79	2	56	24	24	24	27	2.00
18653836--18653875	21	1.9	21	89	0	62	22	22	27	27	1.99
18654990--18655020	13	2.5	13	94	5	55	83	0	12	3	0.75
18667131--18667169	20	2.0	20	94	0	69	28	12	15	43	1.83
18667131--18667174	20	2.4	19	85	11	56	27	15	13	43	1.85
18681984--18682014	16	1.9	16	93	0	53	48	9	6	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18682104--18682174	20	3.7	20	86	5	101	36	0	5	57	1.22
18686497--18686779	23	12.3	23	81	4	295	44	19	14	21	1.86
18687135--18687174	20	2.0	20	100	0	80	45	20	5	30	1.72
18699664--18699700	15	2.5	15	95	0	56	40	0	18	40	1.51
18701087--18701202	62	1.9	59	84	5	151	41	1	6	50	1.37
18710333--18710516	29	6.3	29	83	2	226	26	27	10	35	1.90
18710319--18710490	87	2.0	87	95	0	308	25	27	11	34	1.91
18710336--18710516	87	2.1	87	89	2	274	26	25	11	36	1.89
18729160--18729192	16	2.1	16	100	0	66	24	0	21	54	1.45
18744132--18744236	28	3.8	28	82	1	113	38	11	22	27	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128