genome.fa.s12.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  87  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28621827--28621997	73	2.3	74	90	4	258	26	20	25	27	1.99
28621718--28622305	186	3.2	186	91	1	919	25	22	26	26	2.00
28621325--28622114	414	1.9	415	91	1	1300	25	21	25	27	2.00
28621900--28622104	113	1.8	113	90	4	333	24	20	26	27	1.99
28622018--28622192	72	2.4	74	84	6	232	25	22	25	26	2.00
28622530--28622583	21	2.5	21	84	3	72	20	3	35	40	1.70
28622546--28622600	22	2.5	22	85	8	60	23	3	36	36	1.73
28622615--28622660	21	2.2	21	84	0	56	21	4	26	47	1.69
28623069--28623272	42	4.9	42	92	1	338	21	22	19	36	1.95
28623069--28623272	83	2.4	84	93	1	356	21	22	19	36	1.95
28629500--28629591	9	10.7	9	80	9	111	31	2	21	44	1.64
28631121--28631163	18	2.2	19	84	12	52	55	2	0	41	1.12
28631150--28631297	61	2.4	61	80	4	174	46	8	4	41	1.52
28631228--28631267	16	2.6	15	76	7	53	47	7	0	45	1.31
28631276--28631308	17	1.9	17	93	0	57	51	9	3	36	1.49
28632947--28632986	20	2.0	20	90	9	64	42	7	40	10	1.67
28637152--28637191	15	2.7	15	96	0	71	30	30	22	17	1.97
28637287--28637318	16	2.0	16	93	0	55	28	18	6	46	1.73
28637469--28637551	27	3.1	27	63	13	73	40	6	19	33	1.76
28637446--28637524	25	3.1	25	62	13	61	45	5	18	30	1.71
28637446--28637551	52	2.0	52	100	0	212	43	5	18	32	1.74
28637455--28637537	26	3.2	26	63	13	71	40	4	21	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28639140--28639233	32	2.7	37	82	16	144	50	7	3	39	1.47
28639210--28639253	20	2.2	20	95	0	79	52	2	6	38	1.41
28640804--28640868	21	3.1	21	90	0	103	33	18	44	3	1.65
28640833--28640913	12	7.2	12	66	16	57	38	16	39	6	1.73
28640833--28640916	33	2.5	33	88	0	132	38	15	40	5	1.72
28641323--28641574	42	6.0	42	91	3	332	24	21	22	32	1.98
28645965--28646008	20	2.1	21	83	8	54	20	6	11	61	1.52
28646437--28646623	93	2.0	93	100	0	374	33	13	20	33	1.91
28648279--28648311	14	2.2	15	89	10	50	12	3	27	57	1.49
28648620--28649261	94	6.9	94	79	4	528	28	19	17	33	1.95
28649098--28649216	44	2.7	44	80	2	114	29	14	18	37	1.90
28663808--28663902	25	3.7	25	82	9	102	56	6	6	30	1.49
28665003--28665050	22	2.2	22	100	0	96	12	18	52	16	1.75
28669080--28669243	50	3.2	50	72	19	163	51	4	9	34	1.55
28669105--28669265	52	3.1	51	69	21	145	52	3	9	34	1.52
28669185--28669233	20	2.5	20	86	0	71	55	0	8	36	1.30
28669077--28669291	106	2.0	105	91	1	351	51	3	9	34	1.53
28670116--28670181	20	3.4	19	72	8	62	19	16	9	54	1.68
28670136--28670192	19	2.9	19	71	5	60	19	21	7	52	1.69
28670115--28670192	39	2.0	39	97	0	147	20	19	7	52	1.70
28675757--28675786	2	15.0	2	100	0	60	50	50	0	0	1.00
28682495--28682543	23	2.1	23	96	0	89	24	12	38	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28683380--28684025	138	4.7	138	80	2	575	29	17	21	31	1.96
28683396--28684025	276	2.3	275	82	4	743	29	17	22	31	1.96
28684101--28684146	20	2.3	20	92	0	74	8	21	36	32	1.84
28691165--28691200	18	2.0	18	89	10	56	83	0	16	0	0.65
28691165--28691205	5	8.6	5	87	12	52	82	0	17	0	0.66
28691165--28691212	23	2.1	23	88	7	71	81	0	18	0	0.70
28713114--28713215	51	2.0	51	100	0	204	33	13	21	31	1.92
28715120--28715285	41	4.0	41	100	0	332	43	24	9	22	1.82
28716106--28716146	21	2.0	22	85	9	59	48	2	2	46	1.28
28716278--28716309	13	2.5	13	94	0	55	43	3	6	46	1.44
28727173--28727259	45	1.9	45	85	0	120	21	20	13	43	1.87
28748604--28748660	25	2.3	25	81	0	78	54	12	5	28	1.59
28751898--28752000	9	11.4	9	87	0	125	40	27	7	24	1.82
28760197--28760291	42	2.3	42	92	3	156	22	30	27	20	1.98
28761179--28761270	24	3.8	24	75	4	85	31	19	30	18	1.96
28761192--28761298	49	2.2	49	84	3	135	28	19	31	19	1.97
28761166--28761270	25	4.2	24	75	4	84	31	18	30	20	1.96
28766887--28766935	19	2.6	19	84	9	57	53	4	2	40	1.32
28766942--28766997	30	1.9	28	85	7	76	66	1	0	32	1.03
28767290--28767331	21	2.0	21	90	0	66	54	11	11	21	1.68
28767252--28767390	70	2.0	70	91	2	226	39	12	12	34	1.82
28767356--28767435	41	2.0	40	85	4	108	48	10	12	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28769467--28769537	34	2.2	33	87	5	99	29	23	21	25	1.99
28770222--28770293	27	2.6	27	86	6	101	41	9	1	47	1.45
28770361--28770427	27	2.5	27	87	0	98	29	28	25	16	1.97
28770470--28770603	4	33.5	4	91	5	218	73	0	26	0	0.84
28772623--28772654	3	10.7	3	100	0	64	68	31	0	0	0.90
28772731--28772769	20	2.0	21	85	10	55	66	10	0	23	1.22
28772919--28773003	27	3.1	27	89	0	134	15	29	29	25	1.96
28779454--28779507	22	2.5	21	82	5	63	59	3	1	35	1.26
28779459--28779507	21	2.3	22	82	10	57	57	4	2	36	1.30
28779500--28779541	21	2.1	20	86	8	59	59	0	0	40	0.97
28779567--28779610	21	2.1	21	91	4	72	77	2	6	13	1.07
28779579--28779604	12	2.2	12	100	0	52	76	0	7	15	0.99
28782354--28782410	29	2.0	28	82	3	69	54	8	5	31	1.53
28785507--28785541	5	7.0	5	93	0	61	0	22	0	77	0.78
28794427--28794475	12	4.3	11	79	7	53	73	2	10	14	1.18
28794417--28794478	23	2.7	23	85	7	74	69	3	11	16	1.31
28794689--28794755	22	3.0	23	78	6	57	61	10	11	16	1.57
28798725--28799091	126	2.9	126	86	6	525	30	15	21	32	1.94
28802734--28802883	23	6.7	21	73	16	90	24	0	25	49	1.55
28802719--28802934	68	3.2	68	84	7	262	26	0	21	51	1.51
28802787--28802910	45	2.8	45	92	1	205	26	0	20	52	1.47
28802719--28802938	113	1.9	113	91	3	363	26	0	22	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28802977--28803024	25	1.9	25	95	0	87	39	16	0	43	1.48
28803457--28803491	18	1.9	18	94	0	61	34	8	31	25	1.86
28805205--28805250	20	2.2	21	88	3	67	52	13	26	8	1.69
28807595--28807779	102	1.8	101	88	1	280	36	11	17	34	1.87
28815720--28815772	24	2.3	23	83	9	63	50	5	11	32	1.61
28815768--28815796	15	1.9	15	100	0	58	68	0	0	31	0.89
28815990--28816041	27	1.9	27	88	7	79	61	0	7	30	1.24
28815999--28816041	3	14.3	3	80	9	52	62	0	4	32	1.15
28817691--28817742	20	2.5	22	75	12	63	57	0	9	32	1.31
28817748--28817793	24	1.9	24	82	8	58	54	2	6	36	1.39
28823308--28823345	16	2.4	16	87	12	53	57	0	5	36	1.21
28827668--28827767	3	32.7	3	69	15	53	58	3	7	32	1.40
28828939--28828994	19	2.9	20	72	20	64	1	8	42	46	1.45
28829314--28829454	76	1.9	76	87	0	210	39	10	19	30	1.86
28831596--28831669	34	2.2	34	87	0	103	31	5	25	37	1.79
28844733--28844971	92	2.6	92	84	2	291	32	13	11	42	1.80
28854015--28854063	21	2.3	21	100	0	98	14	24	32	28	1.94
28855930--28856305	27	14.0	26	81	7	398	43	19	19	17	1.88
28855930--28856305	81	4.7	81	84	4	449	43	19	19	17	1.88
28855930--28856305	54	7.0	54	82	4	447	43	19	19	17	1.88
28856493--28856542	26	1.9	26	87	0	73	12	22	26	40	1.88
28863415--28863577	43	3.9	42	80	8	161	29	14	26	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28863720--28863769	23	2.2	23	100	0	82	34	8	34	24	1.84
28867065--28867098	17	2.1	16	88	5	50	76	14	0	8	1.01
28885195--28885234	21	2.0	21	85	9	57	15	15	2	67	1.34
28888724--28888760	10	3.7	10	88	0	56	45	0	13	40	1.43
28894108--28894133	6	4.3	6	100	0	52	34	30	15	19	1.93
28894917--28894956	20	2.0	20	100	0	80	30	25	15	30	1.95
28912835--28912926	47	2.0	47	95	0	166	41	7	11	39	1.71
28912993--28913074	19	4.3	19	70	6	58	31	2	4	60	1.30
28913057--28913100	22	2.0	23	91	8	74	50	0	4	45	1.22
28914916--28914952	3	12.3	3	100	0	74	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128