genome.fa.s12.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  111  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37152757--37152820	13	4.5	13	76	16	65	37	1	42	18	1.60
37153275--37153355	39	2.1	39	97	0	153	55	8	14	20	1.66
37157319--37157360	20	2.1	20	86	0	57	50	4	28	16	1.66
37159608--37159743	67	2.0	68	98	1	265	40	19	22	18	1.91
37160200--37160248	7	7.3	7	86	9	75	69	0	16	14	1.19
37160200--37160248	13	3.6	14	83	10	75	69	0	16	14	1.19
37160200--37160248	20	2.5	20	96	0	89	69	0	16	14	1.19
37162150--37162261	44	2.5	44	78	5	120	29	20	20	29	1.98
37162338--37162435	44	2.2	45	90	1	153	32	20	25	21	1.97
37162534--37162651	46	2.6	44	82	5	130	27	21	22	27	1.99
37162534--37162688	44	3.5	44	75	10	120	30	19	21	29	1.97
37163182--37163346	44	3.8	44	76	6	129	32	15	21	30	1.95
37164210--37164240	8	4.0	8	91	8	55	12	0	0	87	0.55
37164212--37164240	15	1.9	15	100	0	58	10	0	0	89	0.48
37167485--37167510	13	2.0	13	100	0	52	23	7	7	61	1.49
37174805--37174844	19	2.1	19	86	9	55	17	12	5	65	1.44
37175793--37175822	14	2.2	14	94	5	53	70	0	16	13	1.18
37178026--37178494	43	10.7	43	64	12	132	30	17	24	28	1.97
37177950--37178996	132	7.9	132	90	1	1591	29	17	23	28	1.97
37178158--37178514	88	4.1	88	63	16	191	29	18	23	28	1.97
37185892--37185944	28	2.0	28	92	7	92	52	0	1	45	1.11
37186124--37186241	58	2.0	59	98	1	229	45	5	18	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37189123--37189149	6	4.5	6	100	0	54	37	29	0	33	1.58
37190674--37190726	27	2.0	27	92	0	88	20	22	28	28	1.99
37190705--37190915	33	5.8	34	70	20	131	21	19	26	32	1.97
37190701--37190918	76	2.9	76	88	0	310	22	19	26	31	1.98
37199363--37199414	27	1.9	27	100	0	104	19	23	30	26	1.98
37199367--37199664	33	8.8	33	71	21	190	20	20	27	32	1.97
37199427--37199627	103	2.0	103	93	0	348	20	19	26	32	1.97
37199498--37199551	27	2.0	28	96	3	101	20	24	29	25	1.99
37199313--37199582	136	2.0	136	94	1	479	19	18	28	33	1.96
37206840--37206887	21	2.2	22	92	3	80	47	33	14	4	1.63
37207961--37208035	3	24.7	3	72	8	53	26	4	1	68	1.16
37209829--37209877	24	2.0	24	96	0	89	24	18	28	28	1.98
37215011--37215098	44	2.0	44	88	0	131	27	26	10	36	1.88
37216374--37216407	4	8.5	4	86	0	50	20	0	2	76	0.92
37216490--37216548	3	18.7	3	76	10	55	25	5	1	67	1.20
37216547--37216572	9	2.9	9	100	0	52	34	0	0	65	0.93
37223417--37223457	16	2.5	17	88	4	57	39	34	2	24	1.69
37224361--37224394	16	2.1	16	100	0	68	38	0	11	50	1.39
37228122--37228227	52	2.0	53	98	1	205	23	9	12	54	1.66
37228238--37228287	26	1.9	26	91	0	82	40	0	24	36	1.55
37228227--37228287	26	2.5	24	83	5	77	42	0	24	32	1.55
37228328--37228396	36	1.9	36	94	5	122	36	5	11	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37228394--37228494	9	10.8	9	89	4	121	21	5	31	40	1.77
37228394--37228494	18	5.4	18	83	9	139	21	5	31	40	1.77
37228683--37228840	43	3.7	41	76	7	120	26	29	16	27	1.97
37228866--37228917	25	2.2	25	83	10	65	44	1	5	48	1.38
37229103--37229193	43	2.1	43	85	2	121	45	9	10	34	1.73
37229993--37230059	13	5.1	13	82	10	91	31	7	25	35	1.84
37229993--37230057	27	2.4	27	80	12	89	32	7	24	35	1.84
37237789--37237814	12	2.2	12	100	0	52	50	7	15	26	1.71
37240090--37240188	47	2.1	48	88	1	146	44	1	9	45	1.42
37240212--37240260	9	5.4	9	88	9	73	30	8	0	61	1.25
37240210--37240265	17	3.2	18	87	10	80	33	7	0	58	1.25
37240222--37240265	8	5.2	8	86	13	54	34	9	0	56	1.31
37240254--37240308	21	2.7	20	71	23	51	41	7	1	49	1.41
37240357--37240568	83	2.6	82	85	8	261	43	21	2	32	1.65
37240664--37240705	15	2.9	14	86	10	50	28	47	0	23	1.52
37240724--37240770	15	3.3	15	82	8	62	38	36	0	25	1.56
37241159--37241395	41	5.9	41	79	3	255	26	30	22	20	1.98
37241159--37241395	79	3.0	79	82	1	276	26	30	22	20	1.98
37242046--37242133	44	2.0	44	88	0	131	27	26	10	36	1.88
37246259--37246343	24	3.6	24	67	12	68	35	5	3	55	1.41
37254951--37255271	44	7.2	45	71	13	180	27	26	22	23	1.99
37254891--37255271	89	4.3	89	85	2	480	28	25	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37255317--37255806	50	9.8	50	71	1	291	30	21	21	26	1.98
37255317--37255805	100	4.9	100	83	0	568	30	21	21	25	1.98
37255317--37255741	150	2.8	149	73	3	386	32	21	20	25	1.98
37255833--37256077	129	1.9	129	83	3	323	31	22	19	26	1.97
37257533--37257603	28	2.6	28	88	2	108	14	21	7	57	1.60
37257939--37258023	24	3.6	24	67	12	68	35	5	2	56	1.36
37258535--37258601	28	2.4	28	90	2	100	14	22	7	55	1.65
37258547--37258604	28	2.1	28	96	0	107	13	20	8	56	1.63
37258940--37259024	24	3.6	24	67	12	68	35	5	2	56	1.36
37260883--37260917	18	1.9	19	88	11	56	31	11	0	57	1.34
37260968--37261006	12	3.2	12	77	0	51	43	10	0	46	1.37
37261820--37262477	328	2.0	328	100	0	1316	26	18	18	36	1.94
37273829--37274405	100	5.8	100	89	0	758	31	22	22	23	1.99
37273829--37274377	50	11.0	50	76	1	481	29	23	23	23	1.99
37275614--37275638	7	3.6	7	100	0	50	28	0	0	72	0.86
37276702--37276733	3	10.7	3	93	0	55	3	0	28	68	1.04
37277472--37277592	58	2.1	59	98	1	235	42	12	13	32	1.81
37278485--37278557	38	1.9	38	83	10	96	60	5	5	28	1.42
37298716--37298750	18	1.9	19	88	11	56	31	11	0	57	1.34
37298801--37298839	12	3.2	12	77	0	51	43	10	0	46	1.37
37301471--37301499	14	2.1	14	100	0	58	13	6	20	58	1.58
37303392--37303437	20	2.3	20	85	3	58	50	0	2	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37303605--37303677	27	2.7	27	72	16	69	56	0	4	39	1.19
37305796--37305825	15	2.1	14	93	6	51	76	0	0	23	0.78
37306140--37306186	22	2.2	22	85	11	62	65	10	14	8	1.45
37307021--37307062	4	10.5	4	94	0	75	23	0	2	73	0.94
37311275--37311309	12	2.9	12	86	0	52	22	8	2	65	1.34
37317704--37317750	20	2.3	20	81	3	58	53	6	25	14	1.65
37319064--37319117	27	2.0	27	100	0	108	14	18	29	37	1.91
37319922--37320012	26	3.4	27	73	20	66	76	5	7	9	1.14
37319988--37320017	7	4.4	7	91	8	53	86	0	13	0	0.57
37319988--37320017	13	2.2	14	94	5	53	86	0	13	0	0.57
37322211--37322389	88	2.0	87	79	6	191	27	22	24	25	2.00
37322354--37322474	44	2.7	43	84	5	161	26	16	28	28	1.97
37322443--37322776	44	7.6	42	67	13	142	30	19	23	26	1.98
37322442--37322800	131	2.7	131	90	1	542	30	21	23	25	1.99
37322818--37323067	49	5.1	49	74	7	195	35	22	17	25	1.95
37322779--37323029	97	2.6	97	88	1	349	35	22	19	23	1.96
37322814--37323061	97	2.5	97	88	0	352	35	22	17	24	1.95
37323062--37323802	44	17.1	44	69	10	330	28	20	23	26	1.99
37323062--37323809	218	3.5	218	89	2	1130	28	20	23	26	1.99
37323382--37323545	89	1.8	89	81	5	206	27	21	25	25	2.00
37323815--37323933	50	2.4	49	75	8	114	32	20	18	28	1.96
37324226--37324272	23	2.1	22	84	11	60	74	8	0	17	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37325435--37325470	18	1.9	19	88	5	56	33	8	0	58	1.28
37334650--37334741	24	3.8	24	89	0	139	23	29	14	32	1.94
37348585--37348706	58	2.1	58	81	9	140	39	11	7	41	1.69
37350512--37350568	20	2.9	19	82	12	71	24	1	3	70	1.13
37350504--37350574	21	3.4	21	81	11	83	23	1	8	66	1.28
37355252--37355287	18	1.9	19	88	5	56	52	0	22	25	1.47
37364418--37364443	3	8.7	3	100	0	52	69	0	30	0	0.89
37365650--37365687	20	1.9	20	94	0	67	50	2	7	39	1.46
37365672--37365706	15	2.3	15	90	0	52	48	0	0	51	1.00
37371757--37372040	141	2.0	142	98	1	552	27	8	20	42	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128