genome.fa.s12.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  70  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22661965--22662017	27	2.0	27	85	7	72	16	30	18	33	1.94
22664714--22664854	44	3.3	43	75	12	157	33	24	19	23	1.97
22664692--22664823	40	3.2	39	75	12	138	31	21	22	24	1.98
22664692--22664854	84	2.0	83	92	1	272	33	23	20	22	1.97
22665571--22665605	15	2.3	15	90	0	52	14	8	2	74	1.17
22673640--22673690	26	2.1	23	85	10	66	7	9	9	72	1.28
22677935--22677977	6	7.2	6	86	0	50	76	4	4	13	1.10
22679585--22679840	87	3.0	87	88	2	374	29	20	24	25	1.99
22685365--22685477	56	2.0	56	87	0	163	41	19	6	32	1.76
22691421--22691484	24	2.6	24	95	2	110	53	1	4	40	1.31
22694144--22694174	13	2.4	13	88	0	53	38	6	19	35	1.77
22694437--22695342	451	2.0	451	96	0	1650	32	21	12	33	1.91
22708740--22708785	22	2.1	22	87	0	65	10	28	21	39	1.87
22709550--22709681	43	3.1	41	73	12	113	24	26	18	30	1.98
22709751--22709812	25	2.5	26	89	7	101	33	3	19	43	1.67
22709750--22709817	16	4.1	17	71	17	61	33	2	20	42	1.67
22709879--22709994	9	12.7	9	79	13	130	31	1	18	47	1.59
22709851--22710009	65	2.4	65	91	0	255	30	1	21	46	1.62
22710067--22710100	16	2.2	15	89	5	50	29	0	14	55	1.40
22710033--22710146	52	2.1	54	82	10	137	34	0	13	51	1.47
22710519--22710581	31	2.0	31	90	0	99	49	17	12	20	1.79
22710519--22710606	31	2.7	31	81	13	97	51	17	11	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22710992--22711029	13	2.9	13	77	14	51	44	31	5	18	1.72
22711075--22711135	33	1.9	31	83	9	79	54	22	3	19	1.59
22711980--22712054	29	2.6	29	86	0	105	49	10	18	21	1.77
22715879--22715923	21	2.1	22	87	4	65	40	44	0	15	1.47
22715968--22716051	39	2.2	39	95	0	150	48	20	3	27	1.65
22715968--22716066	39	2.5	39	88	3	119	50	20	3	26	1.62
22716151--22716872	115	6.3	112	73	12	418	24	22	19	32	1.97
22716406--22716872	114	4.1	110	77	8	338	25	22	19	32	1.98
22716332--22716895	226	2.5	228	77	6	554	26	22	20	31	1.98
22718754--22718797	18	2.4	18	80	0	52	54	18	2	25	1.55
22721271--22721304	16	2.3	14	90	10	50	52	2	5	38	1.41
22721627--22721697	31	2.2	32	87	9	101	33	0	8	57	1.29
22726763--22726930	83	2.0	84	89	1	257	27	7	29	35	1.85
22726897--22728099	600	2.0	600	100	0	2406	31	16	15	36	1.90
22729996--22730037	21	2.0	21	95	0	75	35	11	14	38	1.83
22753275--22753318	22	1.9	24	86	9	65	43	2	13	40	1.57
22753345--22753396	19	2.7	20	85	8	63	46	7	7	38	1.61
22758793--22758879	10	7.6	11	73	20	72	47	4	1	47	1.30
22765690--22766294	61	9.9	62	73	11	424	32	6	16	44	1.74
22765697--22766294	92	6.5	92	82	1	718	32	7	16	44	1.75
22765700--22766240	184	2.9	184	95	0	931	32	7	16	43	1.75
22774508--22774577	13	5.5	13	71	20	51	68	1	2	27	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22774507--22774577	11	6.5	11	72	18	51	69	1	2	26	1.11
22774508--22774574	23	2.9	23	75	20	68	68	1	2	26	1.12
22774777--22774943	83	2.0	84	98	1	327	29	26	27	16	1.97
22776185--22776557	132	2.8	132	87	3	527	27	26	17	28	1.98
22784298--22784353	8	6.8	8	74	13	51	71	1	1	25	1.05
22784943--22784995	24	2.2	23	83	6	61	60	13	3	22	1.49
22786877--22787003	57	2.2	57	90	1	211	22	28	14	35	1.93
22794334--22794986	326	2.0	334	81	6	792	35	14	12	36	1.85
22798059--22798106	2	24.0	2	100	0	96	50	0	50	0	1.00
22798652--22798694	17	2.6	16	82	17	52	60	0	0	39	0.97
22805735--22805779	18	2.6	18	86	10	58	42	6	15	35	1.73
22808669--22808836	85	2.0	85	89	2	257	30	20	17	30	1.96
22808615--22808970	44	8.0	44	76	9	267	30	21	17	30	1.96
22808751--22809030	138	2.0	138	82	1	337	30	21	17	30	1.96
22824970--22825073	52	2.0	50	90	3	163	37	14	12	35	1.84
22833635--22833697	31	2.0	31	100	0	126	36	19	15	28	1.92
22837805--22838580	387	2.0	387	97	0	1453	38	16	15	29	1.90
22854837--22854992	51	3.1	50	83	3	195	33	23	16	25	1.96
22854854--22855038	51	3.7	49	78	9	167	35	24	14	25	1.93
22856191--22856265	23	3.2	23	77	7	96	42	13	1	42	1.52
22856170--22856265	48	2.0	48	100	0	192	45	12	2	39	1.54
22856170--22856249	25	3.3	25	78	7	110	48	12	2	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22859835--22860121	143	2.0	144	99	0	567	35	7	13	43	1.72
22862835--22862934	42	2.4	42	83	3	130	16	18	18	48	1.82
22862866--22862932	21	3.2	21	64	8	55	13	20	19	46	1.83
22865926--22865992	9	7.4	9	85	6	91	43	20	8	26	1.82
22877400--22877584	95	1.9	95	91	0	298	37	25	6	30	1.81
22878423--22878506	30	2.8	30	92	0	141	41	23	13	21	1.88
22879134--22879167	10	3.4	10	87	0	50	32	8	2	55	1.45
22880013--22880369	41	8.8	41	81	5	420	18	18	32	31	1.95
22879990--22880352	120	3.0	120	85	4	462	17	18	32	32	1.94
22880954--22881011	28	2.0	28	83	9	73	53	1	6	37	1.38
22881434--22881496	7	9.1	7	82	3	65	17	1	41	39	1.59
22881893--22881953	10	5.8	10	78	7	59	49	0	4	45	1.23
22881894--22881958	31	2.1	31	88	8	96	44	1	4	49	1.32
22882773--22882797	13	1.9	13	100	0	50	8	20	0	72	1.10
22886008--22886096	42	2.1	42	83	4	108	24	13	26	34	1.93
22885985--22886211	116	2.0	116	88	1	339	27	11	21	39	1.88
22886160--22886315	43	3.7	43	85	1	208	21	19	32	26	1.97
22890525--22890866	171	2.0	171	97	0	639	42	10	21	26	1.85
22896946--22897062	39	3.0	38	93	3	198	50	28	3	17	1.62
22900253--22900579	163	2.0	161	89	2	503	35	14	13	36	1.85
22912951--22913161	105	2.0	105	97	0	395	25	8	22	44	1.80
22913995--22914082	45	2.0	45	88	2	133	26	21	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22925373--22925543	59	2.9	59	75	3	166	27	29	10	32	1.90
22931488--22931582	46	2.1	45	84	9	131	34	23	5	36	1.77
22939955--22939979	13	1.9	13	100	0	50	44	0	8	48	1.32
22941039--22941175	41	3.3	41	83	0	157	19	17	27	35	1.95
22941946--22942143	24	8.6	23	66	19	99	26	6	20	45	1.75
22941936--22942160	69	3.3	69	94	0	396	26	8	19	45	1.78
22945153--22945227	37	2.0	37	100	0	150	26	16	18	38	1.91
22948422--22948520	28	3.6	27	81	9	119	31	12	28	28	1.92
22949336--22949516	24	7.6	25	73	14	143	25	13	15	44	1.84
22949327--22949446	23	5.1	23	79	11	136	25	12	14	47	1.79
22949327--22949536	47	4.5	47	84	4	244	27	12	15	44	1.83
22958192--22958237	23	2.0	23	100	0	92	43	4	21	30	1.72
22958887--22958925	12	3.3	12	82	7	53	35	0	0	64	0.94
22959048--22959108	30	2.0	30	93	0	104	55	14	3	26	1.55
22964700--22964733	17	2.0	17	88	0	50	29	0	0	70	0.87
22969851--22969900	21	2.4	21	89	0	73	22	36	22	20	1.96
22984594--22984618	10	2.5	10	100	0	50	40	8	0	52	1.31
22985516--22985563	5	9.2	5	88	6	69	79	2	2	16	0.93
22985515--22985568	16	3.3	16	87	10	74	79	1	1	16	0.91
22989737--22989930	43	4.5	43	73	7	169	34	21	16	27	1.95
22989737--22989932	86	2.3	86	76	7	200	33	21	16	27	1.95
22996672--22996715	23	1.9	23	81	9	54	59	4	6	29	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23004232--23004278	21	2.2	22	92	3	78	21	19	38	21	1.94
23010855--23010973	62	2.0	60	86	6	168	34	5	7	52	1.51
23012103--23012183	43	1.9	42	89	2	126	25	20	1	51	1.55
23018815--23019298	126	3.9	125	82	4	528	28	15	14	40	1.87
23025016--23025056	18	2.3	18	95	0	73	60	9	0	29	1.28
23026105--23026148	17	2.6	17	88	0	61	45	4	2	47	1.35
23037486--23037580	3	31.7	3	85	0	91	33	7	1	57	1.33
23041166--23041198	14	2.4	14	100	0	66	18	18	30	33	1.94
23041516--23041629	44	2.6	44	76	4	104	27	25	16	30	1.97
23041541--23041778	132	1.8	132	89	1	379	25	23	19	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128