genome.fa.s12.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  49  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15522450--15522474	13	1.9	13	100	0	50	48	0	0	52	1.00
15523811--15523877	28	2.4	27	80	11	73	23	23	23	28	2.00
15525409--15525446	20	1.9	20	94	0	67	36	7	5	50	1.54
15529425--15529465	14	2.9	14	88	0	64	21	29	24	24	1.99
15538611--15538698	43	2.0	43	97	0	167	54	7	18	19	1.67
15561347--15561374	14	2.0	14	100	0	56	50	14	7	28	1.69
15563638--15563690	28	1.9	27	81	11	63	35	1	1	60	1.19
15564661--15564733	19	3.9	19	70	13	55	49	0	5	45	1.25
15564811--15564857	23	2.0	23	87	0	67	38	8	6	46	1.60
15564759--15565099	173	2.0	168	86	2	475	44	7	4	43	1.52
15565231--15565272	18	2.2	19	84	16	52	73	4	0	21	1.01
15565881--15565926	19	2.4	19	100	0	92	60	0	28	10	1.30
15576993--15577033	21	2.0	21	90	0	64	41	14	12	31	1.83
15577143--15577278	24	5.7	24	78	3	114	26	25	19	28	1.99
15577166--15577280	24	4.8	24	77	6	117	26	24	20	28	1.99
15577365--15577477	42	2.7	42	87	0	163	38	20	13	28	1.90
15579051--15579115	28	2.3	28	94	0	121	36	13	6	43	1.70
15587120--15587528	140	3.0	138	79	11	452	29	22	21	27	1.99
15587255--15587516	126	2.1	125	88	2	382	29	22	22	26	1.99
15589124--15589211	43	2.0	43	95	4	160	40	4	19	35	1.72
15600109--15600144	15	2.4	15	95	0	63	19	22	36	22	1.95
15600892--15600930	19	2.0	20	85	5	53	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15600900--15600944	22	2.2	20	84	11	56	57	2	0	40	1.11
15611614--15612196	77	7.3	77	78	11	482	46	11	12	28	1.77
15611619--15612153	161	3.3	160	84	6	606	46	11	11	29	1.76
15611619--15612186	238	2.4	238	80	10	590	46	11	12	29	1.77
15612008--15612186	85	2.1	86	80	8	204	48	12	12	26	1.77
15612049--15612209	85	1.9	85	84	2	216	45	12	14	27	1.81
15612337--15612380	16	2.7	17	79	6	56	61	0	0	38	0.96
15612339--15612386	22	2.2	22	92	7	80	56	0	0	43	0.99
15614706--15614741	17	2.1	17	89	5	54	19	44	25	11	1.83
15622486--15622554	25	2.8	24	78	10	68	36	4	1	57	1.27
15626664--15626787	45	2.7	45	81	1	131	30	22	14	32	1.94
15639226--15639258	12	2.8	12	100	0	66	24	15	33	27	1.95
15639355--15639396	17	2.5	17	96	3	77	52	0	9	38	1.34
15640932--15640983	22	2.4	22	87	9	72	57	1	5	34	1.33
15667095--15667144	25	2.1	23	81	7	55	52	4	2	42	1.31
15676975--15677085	56	2.0	57	98	1	215	33	12	14	39	1.84
15692509--15693344	417	2.0	419	99	0	1658	33	12	20	33	1.90
15694906--15694983	38	2.1	38	95	0	138	29	6	20	43	1.76
15695580--15695638	30	1.9	31	83	10	77	30	13	30	25	1.94
15701395--15701541	74	2.0	76	89	5	228	32	13	7	46	1.71
15703151--15703256	18	6.0	18	71	12	76	34	21	18	24	1.96
15703150--15703248	35	2.8	35	84	3	128	34	21	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15715772--15716387	247	2.5	246	91	1	1002	33	11	15	39	1.84
15716520--15716558	19	2.1	19	95	0	69	20	7	25	46	1.77
15721674--15721702	15	2.0	15	93	6	51	68	0	0	31	0.89
15723569--15723599	16	1.9	16	93	0	53	29	0	35	35	1.58
15725596--15725628	17	1.9	18	88	11	52	48	0	9	42	1.35
15731799--15731849	25	2.0	25	100	0	102	39	19	15	25	1.91
15736923--15736971	23	2.1	24	77	11	57	42	6	4	46	1.47
15745817--15745862	23	2.0	23	87	8	67	50	17	2	30	1.58
15754655--15754700	23	2.0	23	86	0	65	47	28	10	13	1.76
15758438--15758565	42	3.0	42	84	0	166	38	21	17	23	1.93
15760840--15760884	11	4.1	11	82	0	54	53	0	6	40	1.27
15760843--15760884	22	1.9	22	95	0	75	52	0	7	40	1.29
15768236--15768314	33	2.4	34	78	2	88	49	5	0	45	1.24
15770169--15770202	16	2.0	18	88	11	54	38	0	2	58	1.13
15779006--15779041	13	2.7	13	91	4	54	0	13	0	86	0.58
15779275--15779326	23	2.3	23	83	3	61	61	1	1	34	1.18
15782041--15782123	41	2.0	43	85	7	116	54	1	1	43	1.16
15782873--15783004	40	3.4	39	75	7	133	25	17	25	32	1.97
15785713--15785899	40	4.6	40	80	5	178	33	27	14	24	1.94
15793045--15793091	13	3.6	13	82	0	67	36	27	10	25	1.89
15794051--15794215	67	2.5	66	80	4	195	35	19	22	23	1.96
15795210--15795249	19	2.1	19	100	0	80	47	5	25	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15798902--15798949	8	5.9	8	78	4	51	39	18	2	39	1.63
15799949--15800091	33	4.3	33	76	8	114	27	1	46	25	1.61
15800189--15800291	51	2.0	51	94	0	179	28	9	27	34	1.88
15802411--15802577	40	4.2	40	82	5	169	17	26	17	38	1.92
15803775--15804349	70	8.2	70	76	2	393	30	26	17	25	1.97
15803775--15804414	140	4.6	140	77	3	516	30	25	17	26	1.97
15803775--15804383	210	2.9	209	78	0	642	30	25	17	26	1.97
15807137--15807208	29	2.5	27	78	10	72	36	6	2	54	1.42
15813045--15813077	17	1.9	17	88	11	50	18	0	6	75	1.00
15818094--15818125	17	1.9	16	93	6	55	34	18	6	40	1.76
15821015--15821095	25	3.3	25	80	11	87	20	24	22	32	1.98
15842149--15842188	20	2.0	20	85	0	53	50	2	0	47	1.14
15842452--15842491	20	2.0	20	85	0	53	50	2	0	47	1.14
15842095--15842704	303	2.0	304	99	0	1204	43	7	6	42	1.58
15846552--15846622	37	1.9	37	100	0	142	43	21	14	21	1.87
15848216--15848478	124	2.1	125	98	1	510	58	8	6	27	1.51
15849952--15850004	24	2.2	24	93	0	88	26	22	15	35	1.93
15852933--15853101	45	3.7	45	80	3	194	17	20	14	47	1.83
15853112--15853282	45	3.8	45	84	4	220	24	19	18	37	1.94
15853109--15853281	90	1.9	90	88	2	258	24	20	17	37	1.93
15854856--15854895	20	2.0	21	85	5	55	20	27	20	32	1.97
15859591--15859635	25	1.9	24	86	13	67	37	28	11	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15860142--15860213	18	3.7	18	74	25	74	22	27	1	48	1.59
15860143--15860228	42	2.0	42	95	0	154	24	25	2	47	1.64
15864946--15864998	26	2.1	24	86	6	70	75	1	20	1	0.99
15864957--15865007	3	17.7	3	80	8	52	70	1	25	1	1.08
15869397--15869431	5	7.0	5	100	0	70	20	60	0	20	1.37
15869513--15869548	18	2.0	18	100	0	72	16	16	27	38	1.90
15877377--15877416	20	2.0	20	90	0	62	30	10	10	50	1.69
15877362--15877428	34	1.9	35	87	3	100	32	8	11	46	1.72
15882653--15882839	42	4.5	42	83	1	205	16	23	18	41	1.89
15882653--15882830	21	8.5	21	68	0	77	15	23	19	42	1.89
15884108--15884171	17	3.8	17	95	0	110	15	45	31	7	1.75
15884723--15885165	107	4.1	107	86	5	615	34	16	16	32	1.91
15885554--15885590	5	7.8	5	85	8	51	78	0	2	18	0.87
15886589--15886618	9	3.3	9	90	0	51	0	0	13	86	0.57
15886589--15886622	16	2.2	16	94	5	61	0	0	14	85	0.60
15887199--15887643	132	3.4	131	88	4	646	25	25	20	28	1.99
15887436--15887636	44	4.6	44	69	9	142	26	25	19	27	1.99
15887628--15887859	128	1.8	129	96	0	430	25	21	23	30	1.99
15887628--15887813	44	4.3	42	69	14	112	24	21	23	30	1.99
15891148--15891192	22	2.0	22	95	0	81	28	17	15	37	1.91
15899190--15899629	107	4.1	107	88	3	643	33	17	17	32	1.93
15900020--15900056	5	7.8	5	85	8	51	78	0	2	18	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15909941--15910035	24	4.2	21	73	18	66	32	5	5	56	1.44
15909941--15910012	24	3.0	24	83	2	83	31	5	5	56	1.45
15910908--15911887	490	2.0	489	95	0	1780	26	17	18	38	1.92
15915764--15915788	6	4.2	6	100	0	50	68	0	16	16	1.22
15915793--15915835	11	3.8	11	87	6	68	74	0	25	0	0.82
15917999--15919146	44	25.8	44	72	8	628	30	18	23	27	1.98
15918177--15918740	267	2.1	266	88	1	833	30	19	22	26	1.98
15917999--15919146	178	6.5	177	80	6	789	30	18	23	27	1.98
15917999--15918920	445	2.1	442	88	1	1346	30	19	23	27	1.98
15918403--15918918	133	3.9	131	76	10	352	29	19	24	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128