genome.fa.s12.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  95  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31418695--31418735	21	2.0	21	90	9	66	51	0	0	48	1.00
31418693--31418735	10	4.2	10	86	13	61	51	0	0	48	1.00
31418794--31418854	30	2.0	30	87	6	88	47	11	8	32	1.69
31427431--31427515	41	2.1	41	93	0	143	28	3	4	63	1.31
31429474--31429519	23	2.0	23	83	8	58	39	13	6	41	1.70
31434362--31434469	25	4.3	25	84	0	135	32	15	28	23	1.95
31439347--31439385	19	2.1	19	90	0	60	25	10	15	48	1.76
31439274--31439450	54	3.3	53	87	3	230	31	12	15	40	1.84
31441318--31441357	20	2.0	20	90	9	64	15	22	7	55	1.65
31441547--31441681	49	2.8	49	90	0	216	24	20	20	34	1.96
31441666--31441774	50	2.2	49	83	6	130	22	28	22	26	1.99
31441693--31441789	50	1.9	50	89	4	151	20	30	22	25	1.98
31445144--31445176	12	2.8	12	95	0	57	9	21	9	60	1.54
31445145--31445184	12	3.3	12	89	0	53	12	22	7	57	1.60
31445386--31445515	49	2.6	50	81	3	147	23	27	20	29	1.98
31445443--31445538	50	1.9	50	82	0	120	18	30	22	28	1.98
31449609--31449846	50	4.6	51	80	3	167	26	19	28	24	1.98
31449652--31449892	50	4.8	50	80	0	248	27	20	28	24	1.99
31449651--31449883	100	2.3	100	82	3	290	27	20	28	23	1.99
31450849--31450896	25	1.9	25	95	0	87	22	20	18	37	1.94
31460212--31460240	14	2.1	14	100	0	58	34	6	0	58	1.25
31468224--31468350	20	6.3	20	76	4	130	36	22	31	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31469921--31469957	18	2.1	18	100	0	74	29	32	10	27	1.90
31477626--31477822	27	7.3	27	73	6	159	43	18	19	18	1.89
31477626--31477775	53	2.8	54	78	9	171	44	20	18	18	1.88
31477626--31477822	54	3.7	52	80	4	198	43	18	19	18	1.89
31477626--31477822	107	1.8	107	82	0	250	43	18	19	18	1.89
31484601--31484758	27	5.9	26	80	10	151	41	19	18	20	1.91
31484605--31484748	54	2.6	54	84	9	186	43	18	18	19	1.88
31488967--31488992	13	2.0	13	100	0	52	38	23	30	7	1.83
31496624--31496666	18	2.4	18	96	0	77	37	16	11	34	1.85
31497664--31497778	27	4.3	27	86	1	151	25	16	18	40	1.91
31497659--31497793	54	2.5	53	84	2	171	25	16	18	39	1.91
31497659--31497802	53	2.7	54	83	2	164	25	15	18	40	1.90
31499298--31499351	25	2.2	25	93	0	90	16	48	12	22	1.80
31501758--31501798	15	2.7	16	85	14	52	9	17	21	51	1.74
31503489--31503537	25	1.9	26	84	12	66	36	14	12	36	1.83
31504485--31504709	114	2.0	114	94	0	396	33	13	21	31	1.93
31507295--31507854	41	13.7	41	100	0	1120	31	12	4	51	1.60
31509973--31510020	20	2.3	22	82	13	57	45	2	0	52	1.12
31511460--31511599	33	4.2	33	87	2	183	15	10	35	39	1.81
31513368--31513484	43	2.8	42	77	5	119	23	29	27	20	1.99
31513537--31513576	19	2.1	19	85	0	53	15	27	32	25	1.95
31514435--31514520	43	2.0	43	90	0	136	23	22	2	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31515716--31515742	13	2.1	13	100	0	54	40	0	14	44	1.46
31516246--31516272	3	9.0	3	100	0	54	33	0	0	66	0.92
31516552--31516588	16	2.4	16	86	13	51	78	0	0	21	0.75
31516975--31517020	24	1.9	24	86	8	67	34	2	2	60	1.21
31517054--31517194	68	2.1	67	80	14	164	46	9	5	37	1.61
31517114--31517141	9	3.1	9	100	0	56	57	10	0	32	1.33
31517084--31517225	68	2.1	66	94	2	248	45	9	4	40	1.58
31517214--31517255	16	2.6	16	92	0	66	42	7	2	47	1.43
31517229--31517291	23	2.8	23	82	2	74	49	1	1	47	1.20
31517084--31517247	68	2.5	66	86	10	216	45	9	4	40	1.55
31521486--31521529	22	2.0	22	100	0	88	18	18	18	45	1.86
31523229--31523276	22	2.2	22	81	7	53	58	2	2	37	1.22
31523242--31523285	22	2.0	22	86	0	61	54	0	2	43	1.12
31526407--31526490	32	2.6	33	71	5	82	48	2	4	44	1.36
31527814--31528000	90	2.1	88	82	8	218	37	21	8	32	1.83
31528021--31528060	20	2.0	20	95	0	71	47	0	5	47	1.24
31528274--31528332	18	3.3	18	77	11	68	32	1	0	66	1.02
31528703--31528741	10	3.6	11	83	16	55	71	2	0	25	0.98
31534717--31534779	11	5.7	11	76	0	54	41	50	0	7	1.31
31534718--31534789	22	3.3	22	80	3	65	40	50	0	9	1.36
31535671--31535707	18	2.0	19	89	5	58	5	43	0	51	1.24
31539849--31539942	35	2.6	36	75	9	95	24	12	17	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31553039--31553358	28	11.4	28	78	6	283	25	16	22	35	1.94
31553039--31553451	56	7.3	56	77	7	295	26	17	22	33	1.96
31553625--31553663	18	2.2	18	95	0	69	41	2	28	28	1.69
31554510--31554537	11	2.5	11	100	0	56	50	7	0	42	1.30
31556128--31556169	20	2.0	21	90	4	68	57	14	0	28	1.38
31559184--31559326	72	2.0	72	84	2	189	44	11	13	30	1.79
31562411--31562742	67	5.0	68	81	3	372	25	24	15	34	1.95
31562410--31562774	201	1.8	201	86	2	536	25	25	15	33	1.95
31562411--31562749	134	2.5	134	79	1	421	25	24	15	33	1.95
31574240--31574278	19	2.1	19	90	0	60	76	7	7	7	1.15
31582081--31582105	10	2.5	10	100	0	50	52	16	8	24	1.70
31591714--31591766	22	2.4	22	96	0	97	43	3	1	50	1.30
31591727--31591775	22	2.2	22	81	3	53	46	2	2	48	1.25
31592412--31592472	14	4.4	14	72	14	54	72	3	0	24	1.00
31593970--31594034	20	3.2	20	97	0	121	20	23	4	52	1.65
31594224--31594427	43	4.8	43	83	4	234	27	27	21	23	1.99
31594224--31594388	86	1.9	86	90	2	260	28	27	20	24	1.99
31594376--31594513	43	3.2	43	88	1	188	21	24	26	27	1.99
31594395--31594513	43	2.8	43	92	0	193	21	26	26	26	2.00
31597510--31597575	13	5.1	13	79	0	69	30	7	25	36	1.84
31597519--31597575	26	2.2	26	87	0	78	35	7	26	31	1.83
31598066--31598091	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31598914--31598973	10	5.7	11	75	18	56	46	5	0	48	1.24
31598907--31598981	29	2.5	29	81	12	82	48	5	1	45	1.33
31598907--31598979	30	2.4	30	82	8	87	49	4	1	45	1.29
31598914--31598976	20	3.1	20	77	11	74	44	4	0	50	1.23
31599289--31599494	7	28.9	7	67	7	56	46	31	2	18	1.64
31599290--31599494	14	13.9	14	69	18	103	46	31	2	19	1.64
31599297--31599381	36	2.4	36	82	7	102	50	30	1	17	1.54
31599322--31599431	29	3.8	29	73	4	98	44	32	2	20	1.65
31599389--31599494	21	5.0	21	70	13	72	47	30	1	20	1.61
31599739--31600126	41	9.5	41	81	1	454	31	28	18	21	1.97
31599669--31600126	163	2.8	162	81	2	504	31	27	19	22	1.98
31599669--31600126	82	5.6	82	80	2	465	31	27	19	22	1.98
31599787--31600123	124	2.7	123	84	2	444	30	27	19	22	1.98
31601169--31601293	44	2.8	45	83	2	144	28	22	16	32	1.96
31601296--31601426	46	2.8	46	91	0	217	21	17	18	42	1.89
31610572--31610609	18	2.1	18	90	0	58	42	5	21	31	1.75
31622415--31622581	83	2.0	84	98	1	327	40	17	8	32	1.80
31624600--31624848	56	4.7	54	76	12	248	26	25	22	25	2.00
31624666--31624801	50	2.7	51	82	4	170	21	27	24	27	1.99
31626541--31626716	50	3.5	49	79	6	167	22	28	21	28	1.99
31628406--31628446	20	2.0	20	90	0	64	29	14	21	34	1.93
31637662--31637725	21	3.2	21	82	13	89	31	17	4	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31637665--31637722	18	3.1	18	87	7	71	34	15	5	44	1.69
31639529--31639572	23	1.9	23	85	0	61	27	13	20	38	1.90
31639519--31639582	23	2.9	21	75	11	56	29	15	18	35	1.92
31652822--31652868	23	2.0	23	91	0	76	40	4	10	44	1.59
31654269--31654380	43	2.6	43	80	8	138	23	20	26	29	1.99
31655342--31655415	23	3.2	23	88	1	76	27	12	18	41	1.86
31655354--31655419	24	2.8	23	88	4	96	28	13	18	39	1.89
31655363--31655447	23	3.7	23	81	6	64	25	11	22	40	1.88
31656954--31656984	12	2.5	13	89	10	55	12	19	0	67	1.22
31659335--31659446	32	3.5	32	79	6	129	48	16	9	25	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128