genome.fa.s12.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  44  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13837666--13837774	23	5.0	22	80	6	116	36	22	21	20	1.95
13837982--13838058	36	2.1	37	85	7	104	32	22	1	44	1.61
13839002--13839039	14	2.4	17	87	12	55	52	0	0	47	1.00
13839115--13839214	51	2.0	51	95	0	182	21	21	11	47	1.81
13839673--13839711	13	3.1	13	89	10	55	51	2	0	46	1.14
13839641--13839901	86	3.0	86	97	1	490	50	8	2	38	1.44
13839759--13839797	13	3.1	13	89	10	55	51	2	0	46	1.14
13839845--13839883	13	3.1	13	89	10	55	51	2	0	46	1.14
13840702--13840760	23	2.6	22	79	10	57	67	5	1	25	1.20
13840725--13840766	15	2.8	15	85	7	59	71	2	4	21	1.16
13840875--13840920	18	2.5	19	83	13	60	21	0	6	71	1.08
13840873--13840917	19	2.5	19	82	7	58	22	0	6	71	1.09
13847986--13848289	59	5.2	59	86	2	434	36	11	26	24	1.90
13847986--13848288	116	2.6	117	89	2	448	36	11	27	24	1.90
13848012--13848301	29	9.9	29	70	9	196	36	12	26	24	1.90
13848561--13848599	20	1.9	20	89	5	60	38	20	0	41	1.53
13850726--13850925	100	2.0	100	94	0	346	26	20	16	38	1.92
13851510--13851536	13	2.1	13	100	0	54	14	14	0	70	1.17
13851534--13851580	11	4.5	11	82	12	64	31	2	19	46	1.61
13851541--13851579	20	2.0	20	100	0	78	30	2	20	46	1.64
13856315--13856533	29	7.5	28	68	15	88	34	10	29	25	1.89
13856328--13856560	88	2.7	87	86	4	333	35	10	28	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13856457--13856617	59	2.8	60	87	6	233	36	10	27	25	1.89
13856328--13856630	88	3.5	88	80	8	305	34	11	28	25	1.91
13856341--13856632	29	10.0	29	71	11	211	35	10	28	25	1.89
13857812--13857850	20	1.9	20	89	5	60	35	17	2	43	1.63
13863466--13863550	29	2.9	30	77	5	84	47	25	5	21	1.73
13866429--13866469	18	2.2	19	86	4	57	31	14	0	53	1.41
13867014--13867198	56	3.2	57	72	17	139	59	17	1	22	1.44
13867075--13867326	37	6.8	36	80	14	218	57	19	1	21	1.48
13867005--13867332	70	4.9	66	74	17	216	57	18	1	21	1.50
13867100--13867353	70	3.5	70	79	12	282	58	18	1	21	1.48
13867049--13867325	107	2.6	107	81	13	333	58	19	1	21	1.47
13867139--13867321	40	4.9	39	76	16	167	56	19	2	21	1.52
13867264--13867393	30	4.4	27	74	19	86	59	16	2	21	1.48
13867970--13868016	16	2.9	16	87	0	76	40	2	23	34	1.67
13871909--13871999	37	2.5	37	85	7	114	41	3	3	51	1.34
13872499--13872571	20	3.8	19	75	12	69	43	2	5	47	1.40
13872457--13872657	67	3.0	68	76	13	200	43	2	4	48	1.39
13882310--13882342	16	2.1	16	88	11	50	36	9	9	45	1.68
13883147--13883240	31	3.0	31	82	0	125	32	18	22	26	1.97
13895380--13895412	16	2.1	16	88	11	50	36	9	9	45	1.68
13905847--13905914	26	2.7	25	80	13	84	36	20	22	20	1.95
13906016--13906063	25	1.9	25	82	0	60	33	20	29	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13913422--13913560	61	2.3	61	87	0	188	30	26	15	28	1.96
13917436--13917528	42	2.2	43	80	5	100	31	22	18	27	1.97
13923350--13923522	74	2.3	74	87	2	249	33	14	21	30	1.93
13923989--13924041	26	1.9	27	88	11	81	67	0	1	30	1.01
13924043--13924069	13	2.1	13	100	0	54	40	0	0	59	0.98
13925751--13925809	27	2.2	27	93	0	100	49	5	15	30	1.66
13926723--13926775	24	2.2	25	86	3	72	32	5	13	49	1.65
13929281--13929342	25	2.5	23	82	10	61	22	29	14	33	1.94
13931094--13931154	3	19.3	3	80	12	61	27	1	3	67	1.16
13931626--13931822	106	1.8	109	85	3	283	29	16	19	33	1.94
13936015--13936071	26	2.3	26	79	11	66	59	7	7	26	1.49
13938140--13938182	20	2.1	20	82	4	50	65	4	4	25	1.32
13939947--13940050	46	2.3	43	80	12	120	25	17	23	34	1.96
13945204--13945333	39	3.3	39	83	2	154	30	2	21	46	1.64
13945289--13945330	22	1.9	22	85	9	59	28	0	23	47	1.52
13945986--13947919	464	4.2	463	88	1	2644	27	21	28	22	1.99
13948026--13948069	11	3.7	11	90	9	61	36	6	18	38	1.77
13949245--13949451	48	4.3	48	81	3	245	27	23	28	21	1.99
13952063--13952106	21	2.0	22	95	4	81	45	0	0	54	0.99
13955331--13955415	23	3.9	22	79	18	81	23	3	1	71	1.08
13968131--13968182	27	1.9	27	96	0	95	26	21	36	15	1.93
13968681--13968755	28	2.8	26	91	4	123	25	0	14	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13969975--13970073	44	2.2	44	94	0	171	5	33	2	59	1.30
13970793--13970832	19	2.1	19	100	0	80	42	15	5	37	1.68
13972745--13972860	25	4.7	24	75	9	81	31	20	24	23	1.98
13973286--13973344	28	2.1	28	96	0	109	32	22	13	32	1.92
13975272--13975298	6	4.5	6	100	0	54	62	0	0	37	0.95
13982105--13982134	2	15.0	2	100	0	60	50	0	0	50	1.00
13982363--13982455	26	3.6	26	86	0	132	19	31	25	23	1.98
14013730--14013940	85	2.5	84	80	1	224	31	17	18	32	1.94
14019039--14019071	2	16.5	2	100	0	66	51	0	0	48	1.00
14019086--14019120	18	2.0	17	88	5	52	34	17	0	48	1.47
14024682--14024721	21	2.0	19	85	9	53	27	5	10	57	1.52
14029678--14029739	25	2.5	25	86	0	79	20	19	24	35	1.96
14029700--14029748	25	2.0	25	88	4	73	20	22	28	28	1.98
14029897--14029948	26	2.0	26	81	7	61	40	7	17	34	1.78
14033207--14033241	18	1.9	18	94	0	61	48	8	14	28	1.73
14039498--14039549	23	2.3	23	93	0	86	7	19	28	44	1.78
14044907--14044972	33	2.0	33	100	0	132	12	9	36	42	1.74
14046954--14047004	26	2.0	26	88	0	75	11	17	27	43	1.84
14068369--14068461	35	2.6	35	89	1	132	17	15	30	37	1.90
14071772--14071808	12	3.1	12	92	0	65	48	0	2	48	1.15
14073236--14073534	33	8.4	33	66	23	135	33	27	19	19	1.96
14073229--14073436	75	2.8	75	88	0	308	31	27	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14073341--14073568	102	2.2	102	90	0	366	32	29	17	20	1.96
14080718--14080985	33	7.7	33	70	18	188	32	26	20	20	1.97
14080727--14080987	135	1.9	135	90	1	416	32	27	19	20	1.97
14089520--14089575	23	2.4	23	84	0	67	23	16	14	46	1.83
14093364--14093601	50	4.6	50	85	4	260	23	28	20	26	1.99
14100078--14100139	26	2.4	26	86	5	81	41	12	12	32	1.81
14100695--14100866	43	4.0	43	100	0	344	34	11	16	37	1.85
14103378--14103669	145	2.0	146	99	0	577	45	8	10	34	1.71
14105454--14105504	26	2.0	26	84	0	66	54	11	5	27	1.59
14105860--14105891	16	1.9	17	93	6	57	40	0	6	53	1.26
14105925--14105992	28	2.4	28	92	2	109	45	0	11	42	1.40
14107674--14107705	8	4.0	8	100	0	64	12	0	0	87	0.54
14113789--14113813	13	1.9	13	100	0	50	24	32	36	8	1.84
14114321--14114589	90	3.0	90	86	0	349	26	26	14	31	1.95
14114752--14114787	6	6.0	6	100	0	72	50	16	0	33	1.46
14123019--14123057	3	13.0	3	100	0	78	33	0	0	66	0.92
14129260--14129318	25	2.3	26	74	5	68	35	18	27	18	1.94
14130669--14130737	25	2.7	26	82	4	79	40	18	11	28	1.86
14130673--14130822	51	3.0	50	75	6	142	38	16	14	30	1.88
14130683--14130837	25	6.2	25	72	11	102	38	16	14	30	1.89
14132377--14132442	22	3.0	22	78	14	73	28	0	3	68	1.05
14132464--14132519	25	2.2	26	87	9	80	35	1	3	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14132974--14133000	7	3.9	7	100	0	54	59	0	0	40	0.98
14133195--14133243	17	2.7	17	76	14	53	36	4	0	59	1.17
14135464--14135542	33	2.4	33	89	4	124	40	12	8	37	1.75
14136007--14136541	266	2.0	266	92	0	890	25	24	23	26	2.00
14138067--14138126	26	2.2	28	80	8	72	56	11	3	28	1.51
14138076--14138125	12	3.9	12	79	20	57	58	10	2	30	1.42
14138471--14138559	39	2.2	42	78	9	96	67	10	2	20	1.31
14138696--14138766	31	2.2	32	78	7	83	33	25	0	40	1.56
14139545--14139590	23	2.0	24	83	12	60	6	8	6	78	1.10
14139145--14140290	380	3.0	379	91	3	1838	32	16	13	38	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128