genome.fa.s12.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  32  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9890259--9890324	14	4.5	14	74	23	55	56	1	0	42	1.08
9893875--9893907	12	2.8	12	100	0	66	42	0	0	57	0.98
9895926--9896103	51	3.5	51	94	2	306	35	15	23	25	1.94
9896078--9896116	7	5.6	7	96	0	69	41	10	30	17	1.83
9895875--9896211	115	3.0	114	83	6	386	34	15	24	26	1.94
9896031--9896167	65	2.1	64	86	4	186	36	14	24	24	1.93
9898184--9898335	23	6.6	22	78	6	133	25	16	15	42	1.87
9904916--9905224	153	2.0	153	94	0	546	38	14	9	36	1.80
9905240--9905305	14	4.5	14	74	23	55	56	1	0	42	1.08
9911313--9911367	27	2.0	29	85	7	78	67	9	0	23	1.19
9916224--9916307	25	3.4	25	73	15	75	26	23	17	32	1.97
9920215--9920652	44	9.6	44	67	16	198	28	21	18	31	1.97
9920244--9920665	141	3.0	141	96	0	763	27	21	17	32	1.96
9920444--9920624	97	1.9	97	80	8	215	28	20	18	32	1.96
9920575--9920697	44	2.8	44	80	7	133	27	20	21	30	1.98
9920740--9921118	131	3.0	126	86	5	482	24	24	20	30	1.99
9920865--9921141	131	2.1	131	95	0	500	24	25	22	27	1.99
9921943--9922026	25	3.4	25	73	15	75	26	23	17	32	1.97
9926776--9926819	22	1.9	24	86	9	65	34	13	25	27	1.93
9927188--9927219	16	2.0	16	100	0	64	25	6	12	56	1.59
9944427--9944501	22	3.3	22	67	10	60	25	17	5	52	1.66
9949711--9949752	20	2.0	21	86	4	59	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9953357--9953410	26	2.1	26	100	0	108	38	14	11	35	1.82
9961065--9961113	12	4.2	12	78	5	55	14	10	2	73	1.18
9961062--9961123	23	2.7	23	85	7	74	16	11	3	69	1.31
9961536--9961567	17	1.9	16	93	6	55	46	0	0	53	1.00
9966148--9966190	21	2.0	21	95	0	77	13	30	18	37	1.90
9970061--9970100	20	2.0	20	95	0	71	32	10	12	45	1.75
9971478--9971538	32	1.9	32	96	0	113	50	18	3	27	1.62
9971478--9971551	32	2.5	30	87	10	100	51	18	2	27	1.60
9971479--9971565	27	3.0	27	83	11	77	51	18	3	26	1.62
9972960--9973020	27	2.3	27	79	0	68	50	6	4	37	1.50
9974937--9974975	18	2.2	18	90	9	62	69	0	25	5	1.09
9976625--9976682	29	2.0	29	93	0	98	34	13	13	37	1.85
9977409--9977455	22	2.1	23	84	11	62	25	21	8	44	1.80
9977977--9978004	14	2.0	14	100	0	56	28	21	0	50	1.49
9981662--9981712	18	2.8	18	69	0	57	13	41	3	41	1.63
9984901--9984977	14	5.0	15	71	20	52	42	15	9	32	1.78
9984917--9984956	20	2.0	20	90	0	62	50	12	10	27	1.72
9984905--9984971	34	1.9	35	90	3	109	46	13	8	31	1.74
9984940--9984979	14	2.9	14	84	0	53	42	17	7	32	1.77
9986622--9986673	18	2.9	18	91	0	86	34	15	11	38	1.83
9990136--9990202	26	2.5	26	77	15	75	47	11	2	37	1.56
9990978--9991297	159	2.0	160	99	0	633	44	12	9	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9994984--9995045	30	2.2	27	85	8	79	50	0	3	46	1.17
9998824--9998871	20	2.3	20	82	7	60	35	2	14	47	1.56
9999006--9999047	23	1.9	23	85	9	61	16	7	11	64	1.48
10006501--10006565	28	2.3	28	72	2	67	55	3	7	33	1.44
10006710--10006787	3	27.0	3	79	7	81	60	2	1	35	1.19
10006773--10006835	18	3.4	18	70	12	56	60	3	6	30	1.37
10006759--10006835	38	2.1	34	86	13	102	57	3	5	33	1.39
10007939--10008003	30	2.2	30	82	0	76	10	3	40	46	1.54
10012609--10012643	18	1.9	18	88	11	54	40	11	22	25	1.88
10021847--10021891	20	2.2	20	88	0	63	26	13	15	44	1.83
10033017--10033061	20	2.2	20	88	0	63	26	13	15	44	1.83
10033956--10034119	45	3.6	45	87	1	213	34	29	4	30	1.79
10033987--10034110	23	5.5	22	70	3	86	36	32	4	26	1.78
10036507--10036591	38	2.1	41	83	10	106	65	2	21	10	1.34
10040792--10040949	23	7.1	22	73	5	138	36	31	3	28	1.75
10040786--10040949	45	3.6	45	90	1	249	36	31	3	28	1.75
10040792--10040981	45	4.3	44	83	5	143	38	30	3	27	1.74
10044929--10045046	34	3.4	35	82	4	150	19	27	33	20	1.97
10048398--10048436	20	2.0	20	84	0	51	33	30	23	12	1.92
10054427--10054477	17	3.1	16	81	15	52	43	1	0	54	1.11
10054441--10054477	17	2.2	17	90	9	58	43	0	0	56	0.99
10061369--10061699	4	82.8	4	90	1	484	25	3	24	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10064725--10064780	25	2.2	26	90	3	87	23	10	23	42	1.85
10064773--10064863	25	3.6	25	70	5	85	23	19	24	32	1.97
10064801--10064887	25	3.4	25	70	7	77	19	18	26	35	1.95
10064761--10064887	51	2.5	51	93	3	213	21	17	25	35	1.95
10064761--10064910	51	3.0	50	84	8	187	20	16	26	36	1.93
10068026--10068069	7	6.1	7	92	5	70	27	2	2	68	1.14
10068028--10068076	22	2.2	22	85	7	64	32	2	2	63	1.17
10072446--10072488	14	2.9	14	83	10	50	16	6	9	67	1.40
10072564--10072594	16	2.0	15	93	6	53	51	6	6	35	1.53
10082559--10082590	16	2.0	16	100	0	64	43	12	18	25	1.85
10083468--10083513	22	2.1	22	84	8	58	2	13	10	73	1.17
10084057--10084099	8	5.9	7	92	7	52	44	0	0	55	0.99
10084066--10084096	2	15.5	2	100	0	62	48	0	0	51	1.00
10087568--10087602	17	2.1	17	100	0	70	25	5	28	40	1.78
10088419--10088453	17	2.1	17	88	0	52	48	0	8	42	1.33
10089617--10089646	4	7.2	4	96	3	51	50	3	0	46	1.18
10109322--10109362	15	2.8	15	89	10	59	21	17	0	60	1.35
10110550--10110952	117	3.4	117	78	4	429	28	22	21	28	1.99
10110968--10111289	144	2.2	146	82	7	368	28	21	18	31	1.97
10117607--10118004	44	9.7	43	78	16	411	24	18	27	29	1.98
10117607--10117979	78	4.7	77	79	16	388	24	18	26	30	1.98
10117677--10118000	122	2.7	122	90	2	517	23	18	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10117879--10118025	44	3.3	44	88	3	154	25	20	23	30	1.98
10118816--10118873	19	2.7	22	84	10	68	36	8	17	37	1.80
10119075--10119119	23	2.0	23	86	0	63	24	0	13	62	1.31
10124379--10124427	24	2.0	24	96	0	89	32	18	0	48	1.48
10124877--10124930	18	3.1	18	71	17	60	48	7	0	44	1.31
10124919--10124957	18	2.1	19	85	4	53	48	5	5	41	1.47
10127840--10127922	25	3.3	25	75	12	73	24	22	19	33	1.97
10135220--10135279	25	2.4	25	77	0	66	21	28	18	31	1.97
10140708--10140765	30	1.9	30	89	0	89	55	13	3	27	1.55
10141749--10141778	3	10.0	3	92	0	51	30	0	3	66	1.07
10143834--10143872	19	2.1	19	95	0	69	0	46	10	43	1.37
10147546--10147590	11	4.1	11	79	0	54	22	8	11	57	1.60
10147548--10147598	22	2.3	22	82	0	66	21	5	9	62	1.47
10148606--10148651	20	2.3	20	85	7	58	78	2	0	19	0.86
10153034--10153101	28	2.4	30	78	9	79	67	0	4	27	1.09
10156681--10156720	9	4.4	9	87	0	53	50	0	2	47	1.14
10158995--10159035	20	2.0	20	85	0	55	12	19	17	51	1.76
10162692--10162717	2	13.0	2	100	0	52	50	0	0	50	1.00
10163277--10163414	10	14.9	9	67	15	68	32	2	2	62	1.22
10163360--10163411	18	3.0	17	81	10	61	28	0	1	69	0.99
10163362--10163421	17	3.6	16	80	10	66	28	0	3	68	1.05
10167124--10167162	16	2.4	17	86	4	62	46	7	0	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10170422--10170495	28	2.6	29	89	6	107	39	8	1	51	1.40
10170562--10170628	27	2.5	27	95	0	116	28	29	26	14	1.96
10170675--10170871	4	49.2	4	100	0	394	74	0	25	0	0.82
10181336--10181374	19	2.2	18	86	9	53	48	23	0	28	1.51
10181458--10181496	20	2.0	21	85	10	55	66	10	0	23	1.22
10181633--10181708	27	2.8	26	82	4	89	22	30	23	23	1.99
10181758--10181825	27	2.5	28	95	4	122	47	0	10	42	1.37
10186053--10186093	17	2.3	19	76	16	52	36	14	14	34	1.87
10190708--10190829	37	3.3	37	66	11	106	24	18	26	31	1.97
10190683--10190792	36	3.0	37	66	10	100	26	17	26	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128