genome.fa.s12.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  119  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39584775--39584821	12	3.9	12	76	17	53	23	6	0	70	1.10
39584956--39585015	22	2.8	21	79	5	57	25	46	10	18	1.79
39586118--39586175	23	2.5	22	84	13	73	77	1	1	18	0.94
39586118--39586182	6	11.2	6	74	12	55	78	1	3	16	0.96
39586135--39586174	17	2.4	16	87	4	53	80	2	2	15	0.93
39586135--39586174	16	2.4	17	87	4	55	80	2	2	15	0.93
39586120--39586185	23	2.9	23	77	8	71	78	1	3	16	0.95
39586737--39586771	15	2.4	15	90	4	54	48	0	8	42	1.33
39591698--39591742	5	9.0	5	95	0	81	40	0	22	37	1.54
39591776--39591843	35	1.9	36	90	3	111	29	11	20	38	1.88
39601248--39601298	18	2.9	18	78	16	63	39	1	11	47	1.52
39606187--39606213	9	3.0	9	100	0	54	44	22	0	33	1.53
39606489--39606518	12	2.5	12	94	0	51	6	30	40	23	1.80
39610318--39610597	138	2.0	138	88	1	418	45	5	8	41	1.58
39611514--39611654	73	1.9	73	91	0	228	45	9	17	28	1.78
39611771--39611802	3	10.7	3	100	0	64	34	0	31	34	1.58
39611801--39611839	3	13.0	3	100	0	78	66	0	0	33	0.92
39617482--39617537	28	2.0	28	96	0	103	28	12	25	33	1.92
39620518--39620718	92	2.2	91	85	7	266	26	7	9	55	1.59
39623572--39623597	6	4.3	6	100	0	52	30	38	15	15	1.88
39625476--39625536	28	2.2	28	100	0	122	39	18	13	29	1.88
39628212--39628727	260	2.0	260	99	0	1016	44	7	6	41	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39642034--39642096	22	2.7	24	75	18	62	49	3	1	46	1.27
39642898--39642939	16	2.6	16	96	0	75	47	2	4	45	1.36
39642994--39643275	37	7.7	34	66	18	113	39	6	9	44	1.63
39643035--39643241	56	3.7	55	73	13	188	40	8	9	42	1.67
39642934--39643284	112	3.1	112	95	1	616	40	7	8	43	1.62
39643282--39643313	6	5.3	6	92	0	55	18	0	43	37	1.51
39643336--39643671	33	11.0	27	70	22	151	21	0	36	41	1.59
39643437--39643496	15	4.2	15	72	20	65	25	0	30	45	1.54
39643392--39643502	21	5.3	21	69	14	77	21	0	32	45	1.58
39643466--39644012	33	16.9	33	80	13	599	20	1	36	41	1.60
39643697--39643729	15	2.2	15	94	0	57	27	0	24	48	1.51
39643497--39644012	227	2.3	227	94	1	905	20	1	36	41	1.60
39643408--39643909	260	1.9	260	97	0	961	20	1	36	41	1.60
39643924--39644013	15	6.3	15	68	23	68	23	0	31	45	1.53
39643932--39643991	27	2.5	22	72	25	59	25	0	31	43	1.55
39643936--39644012	29	2.7	29	90	4	113	23	0	33	42	1.54
39643980--39644206	22	10.5	22	82	3	255	22	0	31	45	1.59
39643975--39644206	43	5.3	44	80	8	235	22	0	31	45	1.59
39643981--39644206	65	3.5	65	81	4	253	22	0	30	45	1.59
39644781--39644823	18	2.4	18	80	0	50	41	9	30	18	1.82
39645469--39645494	7	3.7	7	100	0	52	57	15	0	26	1.38
39645574--39645726	78	2.0	78	96	2	281	34	15	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39646507--39646606	51	2.0	51	86	7	141	44	2	28	26	1.65
39646568--39646621	22	2.5	22	85	8	76	44	1	29	24	1.64
39651883--39651960	15	5.4	15	70	11	56	38	34	1	25	1.64
39651950--39651990	20	2.0	21	85	4	57	46	34	0	19	1.50
39665516--39665557	20	2.1	20	86	0	57	47	2	7	42	1.43
39673124--39673272	47	3.0	48	82	7	156	36	24	14	24	1.93
39675551--39675641	34	2.7	34	85	8	123	58	3	2	36	1.27
39676507--39676554	22	2.2	22	96	0	87	52	22	20	4	1.64
39677429--39677547	44	2.7	45	84	8	138	28	21	20	29	1.98
39677583--39677966	50	7.7	50	70	7	269	24	21	21	32	1.98
39677566--39677960	100	4.0	100	88	0	540	24	21	22	32	1.98
39678017--39678248	45	5.2	45	64	12	145	26	26	22	24	2.00
39677977--39678748	177	4.4	178	81	5	555	25	24	23	26	2.00
39677977--39678828	265	3.2	264	80	3	908	25	24	23	26	2.00
39677977--39678828	89	9.6	88	84	2	793	25	24	23	26	2.00
39677977--39678847	176	4.9	175	82	3	734	25	23	23	27	2.00
39683965--39683995	2	15.5	2	93	0	53	51	3	0	45	1.17
39684443--39684476	17	2.0	17	88	11	52	64	11	20	2	1.39
39686766--39686809	11	3.9	11	79	5	52	59	4	0	36	1.18
39689516--39689652	40	3.5	39	80	1	139	38	18	20	22	1.93
39689689--39689892	41	5.0	40	78	8	205	23	20	25	30	1.98
39689689--39689910	82	2.7	81	77	9	227	23	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39689832--39689909	41	1.9	41	81	0	93	21	21	26	29	1.99
39694031--39694216	43	4.3	43	83	6	216	25	17	28	27	1.98
39694031--39694215	87	2.2	86	81	9	218	25	17	28	28	1.98
39694286--39694330	22	2.1	21	91	4	72	42	28	17	11	1.84
39704150--39704185	18	1.9	19	94	5	65	16	5	27	50	1.68
39709731--39710209	234	2.1	229	80	4	525	43	7	11	37	1.70
39710207--39710265	30	1.9	32	86	6	86	45	0	10	44	1.37
39712961--39713355	43	9.2	43	85	1	283	23	19	22	34	1.96
39712961--39713376	86	4.8	86	84	2	442	23	19	21	34	1.96
39713038--39713363	43	7.6	43	86	0	402	22	19	21	36	1.95
39713679--39713722	21	2.1	21	82	0	52	4	43	13	38	1.65
39718350--39718559	9	22.8	9	71	16	101	37	1	15	44	1.58
39718403--39718549	30	4.7	30	78	10	152	38	2	14	43	1.60
39718381--39718513	64	2.1	64	95	0	239	36	1	16	45	1.57
39718387--39718559	18	10.7	18	70	21	134	38	2	15	43	1.60
39719123--39719159	9	4.1	9	92	0	65	45	13	10	29	1.77
39719422--39719492	37	1.9	37	85	5	99	64	0	1	33	1.02
39721151--39721205	19	2.9	19	84	10	69	30	0	40	29	1.57
39721863--39721905	20	2.2	20	100	0	86	55	9	0	34	1.32
39721943--39721983	21	2.0	20	85	4	55	48	2	7	41	1.44
39722758--39723191	114	3.8	114	86	1	611	30	18	20	30	1.96
39725045--39725083	15	2.6	15	87	0	51	28	5	2	64	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39725238--39725274	19	1.9	19	88	0	56	37	2	5	54	1.38
39726585--39726613	15	1.9	15	100	0	58	27	20	13	37	1.91
39729571--39729598	12	2.3	12	100	0	56	14	21	32	32	1.93
39732999--39733037	6	6.3	6	82	5	51	61	0	20	17	1.34
39732999--39733037	18	2.1	19	90	4	62	61	0	20	17	1.34
39734342--39734417	33	2.3	33	84	4	100	30	0	46	23	1.53
39736138--39736194	20	2.8	20	77	20	64	19	15	5	59	1.55
39739481--39740023	270	2.0	271	99	0	1079	39	13	9	36	1.78
39740270--39740305	14	2.5	15	90	4	56	30	0	0	69	0.89
39740559--39740597	17	2.4	17	86	4	53	76	0	5	17	0.96
39755854--39755901	18	2.7	18	76	0	51	22	4	4	68	1.24
39756904--39756988	28	3.0	28	89	6	136	27	24	25	22	2.00
39757330--39757738	27	15.2	27	83	1	417	19	18	20	41	1.91
39758412--39758453	12	3.5	12	75	12	50	23	42	0	33	1.55
39759483--39759515	16	2.1	16	100	0	66	45	24	6	24	1.75
39761279--39761320	19	2.2	19	83	8	50	30	11	2	54	1.49
39762244--39762293	3	16.3	3	95	4	91	34	0	0	66	0.92
39764049--39764326	9	30.6	9	67	17	82	27	1	6	63	1.30
39764046--39764312	78	3.3	78	70	13	257	28	1	6	62	1.31
39764098--39764168	29	2.5	29	86	2	99	28	0	4	67	1.09
39764098--39764234	29	4.6	29	74	13	86	28	0	7	63	1.26
39764005--39764341	168	2.0	169	99	0	667	27	1	7	63	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39764266--39764336	29	2.5	29	88	2	99	28	0	4	67	1.09
39764303--39764382	41	2.0	40	80	11	92	33	1	2	62	1.16
39764386--39764426	21	2.0	21	86	13	59	31	4	7	56	1.48
39764638--39764731	20	4.7	19	73	13	57	22	14	8	54	1.67
39764883--39764934	20	2.6	21	84	9	72	23	15	3	57	1.54
39767471--39767496	3	8.7	3	100	0	52	0	34	0	65	0.93
39771606--39771720	28	4.1	27	85	4	140	29	23	24	22	1.99
39771825--39771879	26	2.1	26	86	0	74	36	20	20	23	1.95
39772075--39772134	27	2.3	26	82	2	66	23	11	26	38	1.89
39772087--39772361	27	10.2	27	84	0	336	20	17	20	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128