genome.fa.s12.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  62  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19834011--19834349	9	38.7	9	72	11	190	49	16	2	32	1.57
19834236--19834349	36	3.2	36	97	0	219	50	15	0	33	1.51
19834335--19834390	26	2.2	26	96	0	103	39	12	7	41	1.70
19839446--19839484	3	13.0	3	100	0	78	66	0	0	33	0.92
19841116--19841315	111	1.8	111	92	0	337	28	18	18	35	1.94
19841205--19841497	142	2.1	142	91	0	469	27	19	18	34	1.95
19841512--19843346	129	14.2	129	99	0	3575	28	21	17	32	1.96
19843513--19843650	44	3.2	44	65	15	106	31	24	18	24	1.98
19843460--19843937	88	5.5	88	86	1	520	25	23	23	27	2.00
19845695--19845724	14	2.1	14	93	0	51	0	16	0	83	0.65
19847873--19847921	19	2.5	20	80	6	57	42	12	18	26	1.85
19848951--19848975	13	1.9	13	100	0	50	60	8	0	32	1.26
19849195--19849569	108	3.5	108	97	0	696	36	19	16	28	1.93
19853457--19853495	3	13.0	3	100	0	78	66	0	0	33	0.92
19854210--19854248	17	2.3	17	90	0	60	69	0	12	17	1.19
19857157--19857207	21	2.4	21	93	0	84	35	17	45	1	1.60
19857787--19857882	42	2.3	42	92	0	165	26	23	20	29	1.99
19860471--19860533	18	3.3	20	78	10	71	60	0	4	34	1.18
19860484--19860530	17	2.5	19	83	10	62	57	0	6	36	1.24
19863338--19863392	21	2.6	21	82	0	65	25	7	36	30	1.83
19863556--19863609	12	4.4	12	77	13	56	57	0	1	40	1.09
19863620--19863663	22	2.0	22	86	0	61	18	18	4	59	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19884298--19885074	393	2.0	387	92	1	1293	23	24	15	36	1.94
19889057--19889115	30	2.0	30	100	0	118	20	13	23	42	1.88
19898143--19898205	30	2.1	30	90	0	99	47	6	9	36	1.62
19899005--19899052	14	3.4	14	88	5	78	43	6	0	50	1.27
19900973--19901043	20	3.4	21	76	17	76	50	2	2	43	1.31
19905382--19905406	13	1.9	13	100	0	50	48	16	8	28	1.74
19906932--19906996	27	2.4	26	75	10	67	32	23	21	23	1.98
19907143--19907189	22	2.1	22	84	7	60	46	14	14	23	1.82
19907211--19907445	32	7.3	32	90	0	353	37	21	20	20	1.95
19907616--19907698	24	3.5	23	78	4	85	50	21	4	22	1.67
19907723--19908104	27	14.2	27	88	0	532	25	20	19	34	1.96
19926126--19926167	20	2.1	20	95	0	75	26	16	35	21	1.94
19939416--19939464	25	2.0	25	88	8	73	38	8	18	34	1.80
19959838--19959989	76	2.0	76	84	2	198	40	20	15	23	1.91
19969073--19969105	16	2.1	16	88	5	50	24	3	0	72	0.98
19978967--19979064	44	2.2	45	88	1	144	23	18	25	32	1.97
19982309--19982336	2	14.0	2	100	0	56	50	0	0	50	1.00
19987378--19987556	91	2.0	90	85	4	243	35	14	20	29	1.92
19989950--19990009	22	2.7	22	82	5	77	21	16	16	45	1.86
19989941--19990013	22	3.3	21	79	7	76	23	19	17	39	1.92
19989940--19990027	44	2.0	44	80	12	101	21	20	19	38	1.93
19991259--19991326	24	2.7	25	79	9	66	26	20	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19994195--19994261	29	2.3	29	92	0	107	43	16	25	14	1.86
20001928--20002098	29	5.9	29	78	6	159	36	16	25	21	1.94
20012443--20012486	18	2.5	17	80	20	54	43	0	11	45	1.40
20031116--20031421	107	2.9	106	89	1	441	32	20	18	28	1.96
20033430--20033923	84	5.8	84	73	10	331	24	23	20	30	1.99
20033324--20033928	128	4.7	128	84	4	695	24	23	20	30	1.98
20033337--20033928	44	13.8	45	69	13	261	24	23	20	30	1.98
20034244--20034299	24	2.3	24	87	6	78	32	17	12	37	1.88
20045568--20045873	107	2.9	106	88	1	434	31	19	19	29	1.97
20049159--20049235	37	2.1	37	100	0	154	54	7	22	15	1.66
20050123--20050187	34	1.9	34	84	9	89	67	3	4	24	1.24
20055082--20055121	21	1.9	21	85	10	55	52	2	17	27	1.57
20055690--20055752	26	2.4	26	81	0	81	25	26	22	25	2.00
20066139--20066211	37	1.9	38	86	2	103	45	2	20	31	1.65
20070494--20070693	93	2.2	92	83	4	242	35	26	13	25	1.93
20071767--20071822	27	2.1	27	83	6	69	39	14	8	37	1.77
20071974--20072038	6	10.8	6	93	0	112	18	29	0	52	1.46
20075257--20075285	8	3.6	8	100	0	58	20	0	10	68	1.18
20078506--20078632	64	2.0	63	93	1	218	47	14	9	28	1.76
20078585--20078642	28	2.1	28	86	0	80	51	13	6	27	1.66
20080546--20080573	1	28.0	1	100	0	56	100	0	0	0	0.00
20083070--20083108	20	2.0	20	85	10	53	2	33	2	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20089150--20089267	61	1.9	61	84	6	159	41	15	4	38	1.66
20098985--20099043	29	2.0	29	87	6	84	37	22	5	35	1.76
20099107--20099140	17	2.0	17	88	11	52	61	14	0	23	1.33
20101310--20101395	38	2.3	38	88	10	131	36	18	18	26	1.94
20117165--20117433	134	2.0	133	91	2	441	32	5	20	41	1.75
20118158--20118217	31	1.9	31	93	0	102	56	8	1	33	1.39
20120435--20120476	16	2.9	15	83	13	52	42	4	23	28	1.74
20125844--20125871	14	2.0	14	100	0	56	35	7	0	57	1.26
20126320--20126357	19	2.0	19	90	10	60	21	39	0	39	1.53
20135648--20135726	39	2.0	39	100	0	158	29	20	7	43	1.79
20135853--20135941	3	29.7	3	100	0	178	67	32	0	0	0.91
20146541--20146581	19	2.2	19	100	0	82	31	4	19	43	1.72
20151027--20151061	17	2.0	18	88	5	54	14	40	28	17	1.88
20156253--20156314	25	2.5	25	84	5	72	32	16	14	37	1.89
20156631--20156679	18	2.6	19	78	12	57	40	14	2	42	1.57
20159292--20159355	28	2.3	29	82	15	73	18	14	7	59	1.58
20168741--20168793	27	2.0	27	96	0	97	43	1	3	50	1.30
20169600--20169655	25	2.2	26	76	17	64	32	3	1	62	1.23
20174836--20174893	25	2.3	25	84	0	71	29	20	20	29	1.98
20179077--20179359	75	3.8	75	86	0	359	22	19	18	38	1.93
20179044--20179366	150	2.2	149	82	2	396	22	19	19	38	1.93
20184728--20184861	67	2.0	66	88	5	198	20	26	6	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20198144--20198469	162	2.0	164	98	1	629	41	14	17	25	1.88
20201287--20201324	14	2.9	14	92	7	62	47	0	5	47	1.24
20201367--20201421	25	2.2	25	81	12	60	49	5	1	43	1.36
20201398--20201469	37	2.0	36	84	13	94	52	2	4	40	1.35
20207688--20207764	38	2.0	38	84	5	100	55	3	2	37	1.32
20235663--20235712	12	4.3	12	75	14	52	74	10	2	14	1.16
20236382--20236407	13	2.0	13	100	0	52	23	30	23	23	1.99
20237020--20237072	24	2.2	24	83	6	63	37	16	24	20	1.93
20237158--20237240	26	3.2	25	86	6	103	38	21	22	16	1.93
20239946--20240001	21	2.8	21	81	8	71	71	3	5	19	1.21
20239932--20240034	18	5.7	18	73	18	72	71	4	4	18	1.22
20240021--20240051	16	1.9	16	100	0	62	70	6	9	12	1.31
20248458--20248510	13	3.9	13	75	18	54	67	0	13	18	1.22
20252574--20252622	3	16.3	3	100	0	98	32	0	0	67	0.91
20253048--20253079	3	10.7	3	100	0	64	31	0	0	68	0.90
20255357--20255392	17	2.2	17	90	5	56	0	13	41	44	1.44
20255860--20256127	138	1.9	138	87	1	394	27	20	21	31	1.98
20269145--20269198	28	1.9	28	84	0	72	18	16	46	18	1.85
20269219--20269253	17	2.1	17	89	5	54	0	14	40	45	1.45
20269247--20269294	18	2.7	18	86	0	69	12	6	39	41	1.68
20269861--20269914	28	1.9	28	84	0	72	18	16	46	18	1.85
20268594--20270025	716	2.0	716	99	0	2839	27	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20269937--20269969	17	2.0	17	88	5	50	0	12	42	45	1.41
20269963--20270010	18	2.7	18	86	0	69	12	6	39	41	1.68
20271141--20271239	37	2.6	37	81	15	98	39	1	3	56	1.21
20271182--20271256	29	2.6	28	73	18	66	38	1	2	57	1.21
20271149--20271246	39	2.6	36	81	16	101	40	1	3	55	1.22
20275134--20275164	4	7.8	4	92	0	53	70	0	3	25	1.02
20276240--20276504	94	2.8	94	80	1	289	25	24	21	28	1.99
20276582--20276701	50	2.4	50	81	0	132	26	25	23	24	2.00
20276706--20276874	87	1.9	88	90	1	268	26	27	21	24	1.99
20280550--20280603	28	1.9	28	84	0	72	18	16	46	18	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128