genome.fa.s12.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  46  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14466408--14466478	36	2.0	36	86	5	99	32	16	16	33	1.92
14469659--14469688	16	1.9	15	93	6	51	46	16	10	26	1.78
14491740--14491805	33	2.0	33	96	0	123	45	16	16	21	1.85
14493117--14493344	43	5.4	41	79	9	219	35	26	15	22	1.94
14493117--14493343	42	5.4	43	79	9	227	36	25	15	22	1.94
14493117--14493344	85	2.7	85	88	2	334	35	26	15	22	1.94
14512339--14512479	25	5.6	25	71	9	90	38	21	21	18	1.94
14518824--14519007	24	7.4	25	71	11	112	35	21	25	17	1.95
14520691--14520872	29	6.2	28	75	13	106	23	25	14	36	1.93
14520735--14520870	58	2.3	59	86	3	186	22	27	12	37	1.90
14520691--14520872	59	3.1	58	81	3	213	23	25	14	36	1.93
14523398--14524110	362	2.0	363	94	1	1270	31	17	16	34	1.92
14533753--14533892	40	3.5	40	85	3	192	17	31	16	35	1.92
14533753--14533891	20	6.9	20	64	18	74	16	31	16	35	1.91
14538766--14538848	13	6.1	13	71	14	60	42	1	18	38	1.58
14543359--14543389	14	2.1	15	94	5	55	25	3	12	58	1.50
14543346--14543391	13	3.4	14	77	19	53	26	8	13	52	1.69
14546517--14546593	38	2.0	38	92	0	127	24	19	9	46	1.79
14547761--14547785	13	1.9	13	100	0	50	28	0	24	48	1.52
14548504--14548546	15	2.8	15	86	10	52	25	4	4	65	1.32
14548535--14548584	20	2.7	18	84	9	66	22	2	0	76	0.89
14548522--14548596	17	4.2	17	73	17	55	26	2	2	68	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14549493--14549530	17	2.2	18	85	4	51	21	2	10	65	1.35
14549514--14549553	21	1.9	21	89	0	62	27	0	12	60	1.33
14555777--14555838	25	2.5	25	82	7	81	29	24	19	27	1.98
14556244--14556371	65	2.0	65	93	0	220	42	14	6	36	1.70
14561007--14561099	29	3.2	29	85	7	118	35	12	30	21	1.91
14561003--14561116	59	1.9	59	81	10	135	36	14	27	21	1.92
14567649--14567687	4	9.8	4	82	0	51	20	25	5	48	1.70
14567649--14567687	12	3.2	12	92	0	60	20	25	5	48	1.70
14567957--14568101	50	2.9	50	88	0	209	20	31	22	25	1.98
14577213--14577257	21	2.1	22	83	4	56	57	0	4	37	1.19
14578551--14578602	26	2.0	26	85	7	70	44	30	5	19	1.74
14582949--14582986	20	1.9	20	84	10	51	52	23	0	23	1.47
14587395--14587455	28	2.2	28	88	2	88	32	21	22	22	1.98
14587563--14587630	26	2.6	26	88	0	100	35	23	22	19	1.96
14587806--14587943	27	5.1	27	86	0	159	22	15	21	39	1.91
14588803--14588844	19	2.3	18	80	15	50	73	0	23	2	0.94
14600240--14600315	29	2.6	29	89	0	116	51	15	18	14	1.77
14610731--14610772	13	3.2	13	93	0	66	21	16	35	26	1.94
14611491--14611612	61	2.0	61	93	3	210	31	13	28	26	1.94
14614516--14614554	20	2.1	18	86	13	53	64	0	5	30	1.15
14619514--14619538	13	1.9	13	100	0	50	56	0	12	32	1.36
14623656--14623863	27	7.7	27	90	2	258	24	24	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14624658--14624698	17	2.4	18	72	12	50	56	12	7	24	1.61
14625773--14625807	8	4.2	8	88	3	52	51	0	11	37	1.38
14626034--14626088	28	2.0	28	100	0	110	49	14	21	14	1.79
14626326--14626410	25	3.4	25	75	16	88	23	24	20	31	1.98
14626326--14626422	25	4.0	22	76	17	86	25	23	19	30	1.98
14634099--14634545	44	10.2	43	62	17	116	25	25	20	27	1.99
14634045--14634657	132	4.7	132	96	0	1077	24	25	20	28	1.99
14663900--14663944	19	2.3	20	75	17	51	35	4	0	60	1.17
14681816--14681840	12	2.1	12	100	0	50	8	0	24	68	1.16
14683031--14683084	11	4.9	11	81	0	72	38	50	0	11	1.38
14683870--14683980	47	2.3	47	75	1	123	22	12	23	41	1.88
14685133--14685247	41	2.7	42	75	11	119	26	22	19	31	1.98
14698807--14698840	16	2.1	17	88	5	52	50	5	2	41	1.42
14699006--14699064	27	2.2	26	84	3	73	45	15	5	33	1.68
14702202--14702253	22	2.4	21	81	9	59	11	5	48	34	1.63
14703221--14703245	13	1.9	13	100	0	50	56	0	0	44	0.99
14704861--14704949	41	2.2	41	93	4	153	37	17	7	37	1.80
14705884--14705920	19	1.9	19	89	10	58	70	10	8	10	1.35
14706784--14706848	23	2.8	23	92	2	103	49	3	38	9	1.51
14707894--14707921	7	4.0	7	100	0	56	14	0	14	71	1.15
14716461--14716503	18	2.3	18	92	4	68	44	0	0	55	0.99
14719959--14720050	37	2.4	40	81	12	97	70	3	4	21	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14720844--14720878	11	3.2	11	95	0	61	28	34	0	37	1.58
14729854--14729893	21	2.0	21	85	5	55	55	2	0	42	1.13
14734951--14735028	26	3.0	26	78	0	84	42	20	19	17	1.90
14735209--14735325	27	4.3	27	80	8	121	18	17	20	42	1.89
14742228--14742278	26	2.0	26	92	0	84	37	25	21	15	1.93
14743508--14743648	25	5.6	25	70	11	110	37	19	12	31	1.88
14743523--14743647	50	2.5	52	84	7	161	38	20	12	29	1.88
14743763--14743789	5	5.4	5	100	0	54	37	0	0	62	0.95
14748124--14748195	24	3.0	24	85	6	65	37	22	22	18	1.94
14748134--14748209	24	3.1	24	92	5	118	34	23	25	17	1.96
14757927--14758626	75	9.3	75	79	4	532	24	23	14	37	1.92
14757927--14758679	150	5.0	150	80	3	674	24	22	14	37	1.92
14757933--14758635	225	3.1	221	80	6	741	24	22	14	37	1.92
14760181--14760254	30	2.4	30	75	14	80	43	1	2	52	1.23
14760465--14760505	3	13.7	3	100	0	82	34	0	0	65	0.93
14766807--14767029	41	5.5	41	88	1	306	33	19	29	17	1.95
14766927--14766993	20	3.3	20	69	10	64	29	16	34	19	1.94
14766908--14767013	20	5.2	20	65	10	63	33	17	33	15	1.91
14769565--14769690	37	3.4	37	82	2	155	17	15	28	38	1.91
14775283--14775339	21	2.7	21	83	5	62	14	12	29	43	1.81
14781022--14781146	53	2.3	54	78	12	123	27	19	5	48	1.71
14786210--14786247	14	2.8	13	92	7	67	47	5	10	36	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14790456--14790489	14	2.4	14	90	9	52	29	44	2	23	1.68
14790508--14790545	14	2.7	15	88	12	62	42	26	0	31	1.56
14790508--14790554	15	3.3	15	85	8	53	40	29	0	29	1.57
14790747--14790790	22	2.0	22	86	8	63	31	43	2	22	1.66
14791190--14791371	41	4.4	41	79	2	170	32	28	19	19	1.96
14794342--14794512	50	3.4	50	80	4	168	26	22	29	22	1.99
14800598--14800695	51	1.9	51	85	8	137	38	11	4	45	1.59
14800933--14800970	11	3.2	12	85	7	51	13	7	0	78	0.94
14801462--14801510	16	3.3	16	67	21	52	26	8	4	61	1.42
14806663--14806712	26	2.0	25	92	4	82	38	8	18	36	1.80
14806728--14806769	22	2.0	22	85	4	59	42	0	14	42	1.45
14811350--14811481	39	3.4	39	89	1	192	22	28	15	34	1.94
14811398--14811457	19	3.0	21	69	14	63	25	26	16	31	1.96
14811383--14811445	19	3.3	19	72	12	65	19	33	14	33	1.91
14813021--14813595	27	21.3	27	87	4	645	41	18	20	20	1.91
14813021--14813596	81	7.1	80	87	3	730	41	18	20	19	1.91
14813771--14813872	26	3.9	26	81	2	107	18	23	21	36	1.95
14813980--14814065	30	2.8	31	89	3	122	20	27	24	26	1.99
14820284--14820350	23	3.0	22	76	10	64	38	17	10	32	1.84
14820543--14820594	9	5.7	9	78	13	61	19	3	1	75	1.06
14825746--14825781	10	3.6	10	100	0	72	0	0	8	91	0.41
14831423--14831452	13	2.4	13	94	5	53	66	0	16	16	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14833257--14833378	44	2.8	43	79	7	120	31	18	19	30	1.96
14836468--14836531	33	2.0	32	81	9	76	45	15	1	37	1.56
14839056--14839098	19	2.3	19	79	0	50	4	34	4	55	1.41
14839601--14840080	27	17.9	27	84	4	569	40	21	18	19	1.91
14840247--14840306	26	2.3	26	85	2	75	18	23	23	35	1.96
14840264--14840336	26	2.8	26	85	0	92	16	21	24	36	1.94
14840449--14840507	28	2.1	27	93	3	100	23	25	25	25	2.00
14845710--14845744	18	1.9	18	88	11	54	34	14	8	42	1.76
14847792--14847821	12	2.5	12	94	0	51	23	40	30	6	1.80
14848415--14849004	299	2.0	298	92	1	993	30	20	25	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128