genome.fa.s12.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  33  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10190684--10190836	73	2.1	73	97	0	288	24	16	26	32	1.97
10197251--10197340	42	2.1	42	87	0	126	46	16	21	15	1.84
10197269--10197385	42	2.8	42	86	0	144	45	15	22	17	1.85
10197267--10197423	21	7.5	21	73	0	107	45	14	22	17	1.85
10198955--10199076	57	2.1	58	87	1	183	45	6	18	29	1.75
10202633--10202743	19	5.8	19	89	0	177	39	9	13	37	1.76
10202640--10202743	38	2.7	38	98	0	199	40	8	12	38	1.74
10206888--10206951	28	2.2	30	83	5	87	57	0	6	35	1.24
10214227--10214275	24	2.1	22	85	7	62	63	2	2	32	1.17
10215339--10215386	19	2.5	20	79	6	53	52	4	12	31	1.58
10221119--10221152	12	2.8	12	81	0	50	29	5	2	61	1.34
10221172--10221228	21	2.5	23	77	16	64	38	3	3	54	1.35
10221189--10221228	21	1.9	21	94	0	71	40	2	5	52	1.37
10221240--10221278	18	2.2	18	95	0	69	38	5	2	53	1.37
10222251--10222294	4	10.8	4	90	4	52	75	6	0	18	1.02
10222857--10222928	24	3.0	24	81	4	83	63	4	0	31	1.13
10234853--10235122	133	2.0	134	99	0	533	44	11	12	31	1.77
10236918--10237279	45	8.0	45	76	4	334	28	17	25	28	1.97
10236918--10237178	91	2.9	91	92	0	425	29	18	24	27	1.98
10236963--10237279	136	2.3	135	81	4	336	28	17	25	28	1.98
10237016--10237313	134	2.2	136	79	5	311	27	18	24	29	1.98
10237292--10237522	40	5.5	40	71	11	185	26	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10237247--10237529	85	3.3	85	91	0	431	27	19	19	32	1.96
10238981--10239012	15	2.1	16	94	5	57	25	0	6	68	1.12
10238980--10239024	15	3.0	15	84	9	56	28	2	4	64	1.25
10240073--10240134	30	2.1	30	81	6	72	48	1	3	46	1.28
10241197--10241381	101	1.8	102	88	3	284	24	16	27	32	1.96
10243541--10243602	30	2.1	30	96	0	115	24	3	14	58	1.51
10246164--10246217	22	2.2	25	84	15	69	61	3	0	35	1.14
10254428--10254462	10	3.5	10	100	0	70	68	0	0	31	0.90
10254554--10254584	9	3.4	9	90	0	53	48	12	9	29	1.73
10254668--10254752	20	4.2	19	75	14	64	51	4	3	40	1.40
10254695--10254743	19	2.6	19	84	9	57	53	4	2	40	1.32
10254734--10254797	19	3.3	19	85	8	76	59	1	0	39	1.07
10254743--10254797	21	2.8	19	86	8	74	60	1	0	38	1.08
10255106--10255146	21	1.9	22	90	5	66	56	12	12	19	1.67
10258271--10258313	18	2.3	19	88	11	63	13	16	0	69	1.19
10269524--10269576	26	2.0	26	82	13	65	47	3	1	47	1.31
10271705--10271735	14	2.2	14	94	0	53	51	9	0	38	1.35
10273944--10273994	3	17.0	3	76	8	50	56	0	7	35	1.28
10273944--10273994	12	4.2	12	82	9	59	56	0	7	35	1.28
10279140--10279179	20	2.0	20	95	0	71	37	10	27	25	1.88
10284993--10285057	3	22.7	3	86	9	91	30	1	1	66	1.10
10285457--10285496	20	2.0	20	95	0	71	62	5	0	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10287422--10287493	29	2.3	31	81	13	85	56	9	2	30	1.46
10287751--10287778	6	4.7	6	100	0	56	85	0	0	14	0.59
10288971--10289004	17	2.0	17	88	0	50	61	2	2	32	1.26
10289958--10290017	30	2.0	30	83	3	75	41	0	38	20	1.52
10298133--10299816	910	1.9	902	91	1	2503	38	22	10	28	1.87
10304083--10304129	24	1.9	25	82	4	60	36	25	14	23	1.93
10304381--10304760	190	2.0	189	99	0	751	30	20	10	39	1.85
10307033--10307130	43	2.3	43	82	3	117	42	19	14	23	1.87
10308753--10308932	89	2.0	90	97	1	344	46	8	8	36	1.64
10309079--10309117	20	2.0	20	85	5	53	64	0	5	30	1.15
10312260--10312298	14	2.8	14	88	0	60	38	12	25	23	1.90
10313181--10313485	156	2.0	156	90	1	486	35	21	14	29	1.92
10319120--10319184	6	11.3	6	73	15	57	75	1	0	23	0.89
10321314--10321338	3	8.3	3	100	0	50	0	68	0	32	0.90
10328318--10328505	50	3.6	50	76	4	151	23	28	20	27	1.99
10332726--10332756	16	1.9	16	93	0	53	29	0	45	25	1.54
10333107--10333137	14	2.2	14	100	0	62	29	32	12	25	1.93
10336215--10336271	24	2.3	24	84	3	69	14	43	3	38	1.62
10336926--10337032	19	5.8	18	70	18	60	53	2	2	41	1.30
10336939--10337033	37	2.5	37	81	11	104	53	3	3	40	1.33
10341636--10341729	49	1.9	49	91	0	152	25	22	8	43	1.81
10346711--10346750	19	2.0	20	90	4	64	65	12	7	15	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10360365--10360489	40	3.1	41	81	8	125	34	21	20	23	1.97
10360541--10360814	41	6.6	42	88	2	385	22	21	25	30	1.99
10361004--10361036	14	2.3	15	94	5	59	30	0	33	36	1.58
10363895--10364284	43	9.1	43	91	0	629	18	17	33	30	1.94
10364808--10364832	12	2.1	12	100	0	50	36	0	24	40	1.55
10365459--10365483	5	5.0	5	100	0	50	20	0	0	80	0.72
10366962--10366993	17	1.9	16	93	6	55	28	28	18	25	1.98
10369565--10369602	19	2.0	20	90	10	62	18	0	13	68	1.21
10371387--10371432	21	2.2	21	88	0	65	26	19	32	21	1.97
10371619--10371665	19	2.4	19	85	3	58	31	10	4	53	1.55
10375526--10375624	34	3.2	33	62	26	79	37	8	17	37	1.79
10375518--10375639	60	2.0	60	98	0	235	36	7	18	38	1.78
10382386--10382423	20	1.9	20	89	10	60	26	0	13	60	1.33
10383723--10383798	39	2.0	38	86	2	107	35	6	13	44	1.69
10383731--10383815	39	2.2	39	84	0	107	38	5	15	40	1.71
10390550--10390628	30	2.5	32	83	8	99	34	3	17	44	1.67
10390550--10390629	32	2.5	30	81	15	90	33	3	17	45	1.66
10390570--10390630	32	1.9	32	90	6	97	29	3	21	45	1.67
10393364--10393412	25	2.0	24	84	4	62	12	10	4	73	1.22
10400292--10400346	21	2.6	21	82	5	67	9	16	12	61	1.55
10400945--10401044	31	3.2	30	72	13	87	35	12	11	42	1.77
10401509--10401560	26	2.0	26	88	3	79	53	11	0	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10405525--10405993	243	1.9	243	93	1	807	33	24	19	23	1.97
10407327--10407367	3	13.7	3	100	0	82	34	0	0	65	0.93
10407451--10407484	16	2.2	15	89	5	50	41	0	0	58	0.98
10409865--10409910	16	2.6	17	80	19	51	45	0	32	21	1.52
10409942--10409975	17	2.0	17	94	0	59	50	0	29	20	1.49
10410281--10410317	9	4.1	9	92	0	65	29	10	13	45	1.77
10419143--10419174	9	3.4	10	87	12	50	40	0	0	59	0.97
10420052--10420104	24	2.2	24	93	0	88	33	24	5	35	1.79
10420400--10420425	4	6.5	4	100	0	52	26	0	0	73	0.84
10427687--10427750	22	2.9	22	75	9	76	39	20	25	15	1.92
10427753--10427931	25	7.2	25	90	0	250	38	18	21	20	1.93
10428935--10428959	5	5.0	5	100	0	50	60	0	0	40	0.97
10429752--10429798	16	2.8	17	81	9	53	72	2	0	25	0.96
10430278--10430338	19	3.3	19	77	13	72	59	3	1	36	1.24
10431288--10431319	3	10.7	3	100	0	64	68	0	0	31	0.90
10452325--10452540	71	3.1	71	64	20	184	40	7	5	46	1.55
10452216--10452632	137	3.0	137	94	1	719	42	7	5	43	1.57
10455097--10455145	3	16.7	3	79	12	57	38	0	2	59	1.09
10455100--10455145	13	3.6	13	82	2	58	39	0	2	58	1.10
10455096--10455143	16	3.1	16	74	20	57	39	0	2	58	1.10
10455596--10455629	18	1.9	18	88	5	52	38	0	23	38	1.55
10458878--10458912	7	5.0	7	92	0	61	28	11	31	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10470552--10470576	2	12.5	2	100	0	50	48	0	0	52	1.00
10472368--10472409	22	1.9	22	85	9	59	69	2	14	14	1.30
10486382--10486608	45	5.1	44	76	10	201	30	14	24	29	1.95
10486382--10486608	90	2.5	88	83	7	271	30	14	24	29	1.95
10487265--10487326	21	3.2	21	68	25	64	17	54	14	12	1.70
10487257--10487326	36	1.9	36	97	0	131	17	54	17	11	1.71
10487401--10487433	16	2.1	16	94	5	59	18	0	0	81	0.68
10487401--10487433	5	6.4	5	93	6	57	18	0	0	81	0.68
10487557--10487585	9	3.0	10	90	10	51	0	17	0	82	0.66
10490555--10490623	25	2.8	25	86	4	95	21	33	14	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128