genome.fa.s12.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  22  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6600563--6600612	21	2.4	21	100	0	100	4	50	14	32	1.61
6606083--6606440	9	40.4	9	66	18	146	35	2	19	42	1.64
6606072--6606154	25	3.3	25	80	15	107	34	2	19	43	1.64
6606093--6606160	17	4.1	16	71	16	57	33	2	20	42	1.67
6606185--6606233	19	2.6	19	83	0	62	32	2	22	42	1.65
6606201--6606266	28	2.5	27	87	7	91	36	1	21	40	1.62
6606296--6606394	41	2.4	42	81	8	123	32	3	20	44	1.67
6606318--6606440	25	4.8	27	74	11	98	33	2	20	43	1.65
6606459--6606557	13	7.5	13	78	6	101	46	3	9	41	1.51
6606431--6606567	66	2.1	65	81	8	152	45	2	9	42	1.51
6606459--6606584	66	1.9	66	83	0	162	46	2	9	42	1.49
6606604--6606640	13	2.8	13	91	4	56	56	2	2	37	1.28
6607822--6607862	13	3.2	13	83	13	57	51	9	4	34	1.56
6607903--6608026	60	2.1	60	92	1	205	41	25	8	24	1.82
6608762--6609229	233	2.0	233	86	2	654	29	20	14	35	1.92
6608995--6609561	270	2.1	270	86	2	771	32	19	13	34	1.91
6608995--6609676	270	2.5	270	82	2	733	32	19	13	33	1.91
6610020--6610069	15	3.4	15	75	5	57	34	44	0	22	1.53
6610024--6610072	14	3.4	14	77	5	62	32	42	0	24	1.55
6610012--6610072	29	2.1	30	93	3	106	36	37	0	26	1.57
6610024--6610085	29	2.1	29	90	0	97	32	43	0	24	1.54
6610024--6610091	15	4.7	14	73	7	55	33	42	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6611241--6611367	41	3.1	41	79	1	137	35	27	19	17	1.94
6611432--6611759	123	2.7	122	83	2	388	26	23	18	31	1.97
6613536--6613585	18	2.7	19	87	6	59	70	0	4	26	1.05
6613545--6613591	18	2.6	18	77	16	60	68	0	6	25	1.13
6613723--6613747	11	2.3	11	100	0	50	16	0	8	76	1.02
6615719--6615974	85	3.0	85	100	0	512	43	15	9	31	1.79
6625233--6625302	22	3.2	22	67	18	65	42	8	8	40	1.66
6625243--6625312	21	3.3	21	68	18	63	44	10	10	35	1.72
6625227--6625312	43	2.0	43	95	0	154	44	9	9	37	1.69
6626429--6626470	22	2.0	22	90	4	68	14	16	4	64	1.45
6626470--6626534	21	3.4	19	75	19	64	47	3	1	47	1.27
6626470--6626535	18	3.5	17	75	16	60	48	3	1	46	1.26
6626594--6626627	16	2.1	16	88	0	50	47	2	0	50	1.16
6631355--6631383	15	1.9	15	100	0	58	68	6	10	13	1.37
6632016--6632057	22	2.0	22	90	4	68	14	16	4	64	1.45
6632248--6632280	17	2.1	17	88	11	52	60	12	6	21	1.53
6632341--6632365	2	12.5	2	100	0	50	52	0	48	0	1.00
6634385--6634432	23	2.1	23	100	0	96	45	12	20	20	1.83
6636711--6636758	23	2.1	23	100	0	96	45	12	20	20	1.83
6643111--6643139	11	2.5	12	94	5	51	68	0	0	31	0.89
6643115--6643193	30	2.6	31	84	6	99	58	5	0	36	1.20
6650807--6650850	23	1.9	22	82	17	54	36	25	0	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6650896--6650988	45	2.1	45	91	0	150	32	21	19	26	1.97
6657333--6657390	20	2.8	21	84	10	66	55	3	1	39	1.27
6660598--6660632	17	2.1	17	100	0	70	40	25	22	11	1.88
6670226--6670284	18	3.1	19	83	11	68	38	0	6	54	1.27
6670411--6670464	23	2.3	23	100	0	108	27	18	16	37	1.93
6671256--6671469	103	2.1	104	99	0	421	43	5	6	44	1.53
6688153--6688209	28	2.0	28	82	0	69	54	8	10	26	1.63
6688257--6688301	12	3.9	12	82	8	58	26	0	8	64	1.23
6688631--6688680	19	2.7	17	80	17	55	44	2	4	50	1.32
6692613--6692746	66	2.0	66	100	0	268	59	13	5	20	1.55
6702438--6702514	18	4.1	18	75	11	66	59	2	1	36	1.19
6702448--6702512	19	3.4	19	78	2	76	60	1	1	36	1.16
6702451--6702525	19	4.0	19	79	6	73	57	2	1	38	1.21
6704958--6704997	17	2.4	17	91	0	62	60	0	40	0	0.97
6705167--6705218	8	6.1	8	76	8	50	17	0	5	76	0.97
6707676--6707756	38	2.1	38	86	0	108	19	48	11	20	1.79
6708003--6708168	48	3.5	47	79	13	171	43	10	10	34	1.75
6711794--6712023	109	2.1	108	88	8	337	59	13	1	25	1.43
6712119--6712152	18	1.9	17	88	5	50	5	29	0	64	1.17
6713252--6713317	31	2.1	31	85	0	87	4	19	27	48	1.68
6713241--6713317	31	2.8	25	70	20	64	5	22	24	48	1.71
6716329--6716381	15	3.6	15	80	14	74	50	9	0	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6716312--6716386	15	4.9	15	73	18	66	48	10	0	41	1.38
6716312--6716386	29	2.5	29	91	6	114	48	10	0	41	1.38
6721197--6721270	13	5.7	13	80	6	69	39	24	9	27	1.86
6729886--6730105	107	2.1	107	93	0	377	37	18	16	27	1.92
6731501--6732330	415	2.0	415	100	0	1660	34	17	18	29	1.94
6733884--6733917	16	2.2	15	89	5	50	44	0	0	55	0.99
6734018--6734145	64	2.0	65	95	1	231	37	17	2	42	1.63
6734442--6734497	21	2.8	20	76	12	53	21	50	8	19	1.75
6753483--6753524	21	2.0	22	90	4	68	38	14	42	4	1.66
6757915--6757959	17	2.7	17	79	3	56	71	0	0	28	0.87
6758088--6758149	28	2.2	28	85	5	81	67	3	3	25	1.20
6758523--6758565	21	2.0	21	91	8	70	20	0	2	76	0.89
6760402--6760431	3	10.0	3	92	0	51	63	0	3	33	1.11
6761560--6761597	2	19.0	2	100	0	76	0	50	0	50	1.00
6762831--6762882	24	2.2	24	85	0	68	38	3	7	50	1.50
6767182--6767233	24	2.2	24	86	6	70	36	3	11	48	1.58
6770118--6770156	21	1.9	20	84	5	51	46	2	2	48	1.29
6776832--6777631	399	2.0	400	99	0	1593	34	18	22	24	1.96
6786057--6786101	22	2.0	24	91	8	76	53	0	22	24	1.46
6786433--6786526	36	2.5	35	80	14	100	43	1	23	31	1.61
6789417--6789453	7	5.3	7	100	0	74	54	0	0	45	1.00
6795226--6795503	130	2.2	129	86	3	391	15	12	15	55	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6795265--6795545	130	2.2	127	84	6	334	16	12	15	55	1.70
6799026--6799204	49	3.6	49	84	3	200	24	24	18	32	1.97
6799126--6799371	50	4.8	50	79	7	226	22	28	19	29	1.98
6803350--6803400	26	2.0	26	100	0	102	27	23	21	27	1.99
6805434--6805725	49	5.8	49	78	9	225	23	27	20	28	1.99
6805483--6805719	50	4.6	50	81	5	192	23	28	19	28	1.98
6809771--6809845	31	2.6	28	78	17	91	42	8	16	33	1.77
6810199--6810243	23	2.0	22	83	12	56	51	0	2	46	1.13
6813846--6813885	14	2.9	14	84	0	53	32	7	17	42	1.77
6820211--6820285	31	2.6	28	78	17	91	42	8	16	33	1.77
6820711--6820799	46	2.0	46	84	8	121	34	25	7	31	1.85
6820789--6820831	16	2.7	16	96	0	77	23	27	4	44	1.73
6826386--6826481	39	2.5	39	94	0	174	28	18	15	37	1.92
6826494--6826548	16	3.4	16	74	18	60	21	30	3	43	1.70
6826491--6826551	32	1.9	32	96	0	113	24	29	3	42	1.70
6829938--6830017	39	2.1	39	100	0	160	42	20	10	27	1.83
6835743--6835875	62	2.2	58	86	6	178	42	3	3	50	1.38
6835847--6835929	41	2.0	41	95	0	148	44	2	8	44	1.47
6842307--6842427	62	2.0	62	96	0	224	29	26	9	33	1.89
6847870--6847948	21	3.6	21	73	8	68	21	20	18	39	1.93
6847871--6847954	45	1.9	43	82	4	105	23	22	16	36	1.94
6850955--6850995	21	2.0	21	85	0	55	46	7	29	17	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6852677--6852729	22	2.5	21	77	20	56	20	7	15	56	1.63
6858561--6858591	16	1.9	16	93	0	53	9	9	9	70	1.33
6871420--6871694	125	2.2	122	91	4	444	31	15	20	33	1.94
6874603--6874949	29	11.8	30	83	9	439	30	0	25	43	1.55
6874601--6874949	59	5.9	58	81	12	426	30	0	26	43	1.55
6874722--6874945	112	2.0	111	89	2	342	30	0	25	43	1.55
6886255--6886354	51	2.0	51	84	4	130	48	1	25	26	1.58
6886313--6886367	11	4.8	12	85	14	73	43	0	32	23	1.54
6897583--6897639	29	1.9	30	85	3	80	17	49	1	31	1.57
6897687--6898016	163	2.0	164	86	2	468	34	24	1	39	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128