genome.fa.s12.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  128  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42804988--42805070	18	4.8	17	72	20	57	67	0	31	1	0.98
42804998--42805118	42	3.0	41	83	7	149	65	0	33	1	1.03
42805017--42805094	24	3.5	24	73	20	87	65	0	33	1	1.01
42805002--42805145	42	3.6	38	77	14	146	65	0	32	1	1.01
42805010--42805138	10	12.7	10	69	21	72	66	0	31	1	1.01
42805024--42805142	38	2.9	41	79	13	138	65	0	32	1	1.03
42804989--42805143	22	6.3	23	69	17	73	66	0	32	1	1.00
42805099--42805166	25	2.8	24	73	10	66	63	0	36	0	0.95
42804975--42805180	80	2.6	81	73	18	196	64	0	34	1	1.03
42808739--42808809	28	2.5	29	90	4	110	49	2	9	38	1.51
42824143--42824226	42	2.0	42	83	4	105	60	8	11	19	1.56
42832090--42832129	18	2.2	18	100	0	80	40	5	27	27	1.77
42836973--42837054	41	2.0	41	86	9	116	54	23	4	17	1.61
42837850--42837888	20	1.9	21	89	5	62	43	10	10	35	1.73
42838193--42838231	19	2.0	20	90	5	62	69	5	7	17	1.32
42840734--42840816	36	2.3	37	89	2	123	6	22	8	62	1.45
42848442--42848467	13	2.0	13	100	0	52	0	7	0	92	0.39
42854084--42854139	22	2.5	23	88	5	87	44	3	5	46	1.43
42856260--42856297	20	1.9	20	88	0	58	50	5	2	42	1.39
42857618--42857688	4	18.0	4	84	8	74	45	30	1	22	1.61
42858994--42859023	3	10.3	3	92	7	53	30	0	0	70	0.88
42861641--42861674	6	5.7	6	96	0	59	55	11	0	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42870916--42870973	16	3.7	15	73	11	53	13	17	3	65	1.40
42880124--42880155	2	16.0	2	93	0	55	3	46	0	50	1.17
42887741--42887779	19	2.1	19	100	0	78	33	15	10	41	1.81
42892948--42893141	94	2.0	96	86	3	268	28	12	10	47	1.76
42915958--42915984	13	2.1	13	100	0	54	29	14	18	37	1.91
42933674--42933765	32	2.9	32	93	0	148	34	10	11	42	1.77
42941938--42942145	104	2.0	104	90	0	326	40	11	12	34	1.80
42964480--42964517	18	2.2	18	90	9	62	31	0	2	65	1.06
42965123--42965173	24	2.1	24	96	0	93	29	0	23	47	1.52
42968537--42968574	18	2.2	18	90	9	62	31	0	2	65	1.06
42970590--42970650	31	2.0	31	86	0	86	44	16	6	32	1.73
42975012--42975057	21	2.2	21	84	7	58	39	0	2	58	1.10
42977043--42977081	19	2.1	19	90	0	60	35	0	0	64	0.94
42977018--42977081	30	2.0	31	85	8	85	40	0	0	59	0.97
42977708--42977739	16	2.1	16	94	5	57	62	0	0	37	0.95
42977733--42977783	19	2.6	21	81	9	63	58	0	3	37	1.16
42978088--42978152	29	2.3	27	81	7	67	33	4	0	61	1.16
42978109--42978141	10	3.2	10	91	8	57	27	3	0	69	1.03
42978210--42978256	18	2.6	18	83	6	60	40	6	0	53	1.27
42982397--42982459	30	2.1	30	96	0	117	60	4	6	28	1.42
42990367--42990392	12	2.2	12	100	0	52	42	15	7	34	1.75
42994327--42994372	6	8.0	6	90	4	60	2	17	8	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42999520--42999560	1	41.0	1	95	0	64	95	0	0	4	0.28
42999517--42999560	16	2.9	16	93	6	74	90	0	0	9	0.44
43004251--43004278	5	5.6	5	100	0	56	0	39	0	60	0.97
43006616--43006702	14	6.0	15	66	20	51	59	1	2	36	1.17
43017357--43017388	12	2.4	14	90	10	50	65	0	3	31	1.08
43018284--43018350	30	2.2	30	94	0	125	47	11	13	26	1.77
43026202--43026242	20	2.0	20	86	9	57	36	19	12	31	1.89
43028220--43028254	15	2.2	16	95	5	63	48	11	14	25	1.77
43036315--43036353	11	3.5	11	85	0	51	20	28	0	51	1.48
43036315--43036357	22	2.0	22	90	0	68	25	25	0	48	1.51
43036316--43036364	22	2.2	22	85	0	62	22	28	2	46	1.63
43038030--43038140	30	3.7	30	84	2	125	34	42	11	11	1.78
43038170--43038212	18	2.4	18	92	0	68	16	27	11	44	1.82
43041449--43041510	31	2.0	31	100	0	124	41	6	9	41	1.63
43044923--43044961	3	13.0	3	88	0	60	33	30	2	33	1.72
43048089--43048308	91	2.4	91	83	6	250	31	5	10	51	1.59
43049673--43049823	78	1.9	78	91	0	248	27	22	23	27	1.99
43060193--43060244	26	2.0	27	96	3	97	30	0	7	61	1.24
43060216--43060256	18	2.3	18	100	0	82	36	0	9	53	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128

The End!