genome.fa.s12.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  30  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9066669--9066922	126	2.0	127	99	0	501	33	12	7	46	1.70
9067931--9068003	29	2.5	29	75	4	76	32	5	1	60	1.28
9069073--9069123	23	2.3	23	93	3	86	41	1	0	56	1.10
9069073--9069149	11	7.4	11	73	20	67	40	2	0	57	1.13
9069081--9069173	42	2.3	42	87	7	129	38	2	0	59	1.10
9071684--9071732	24	2.1	23	81	11	55	57	0	6	36	1.24
9075040--9075093	21	2.6	21	77	8	65	31	27	7	33	1.84
9077899--9077957	22	2.5	24	72	25	63	42	8	20	28	1.81
9079860--9079903	18	2.6	16	83	13	61	68	2	18	11	1.30
9084446--9084624	68	2.9	59	83	13	250	44	9	5	40	1.60
9084535--9084562	9	3.1	9	100	0	56	57	10	0	32	1.33
9084476--9084646	68	2.5	68	96	1	310	46	8	4	39	1.56
9084635--9084676	16	2.6	16	92	0	66	42	7	2	47	1.43
9084476--9084668	68	3.0	66	91	6	274	47	8	4	39	1.54
9084650--9084711	23	2.7	23	82	2	72	48	1	1	48	1.21
9090164--9090212	23	2.0	25	88	7	75	65	4	0	30	1.11
9090404--9090448	22	2.0	23	91	4	74	20	8	8	62	1.51
9090408--9090459	23	2.2	23	79	3	59	23	7	7	61	1.49
9091159--9091197	18	2.1	18	85	4	51	53	7	0	38	1.30
9091176--9091213	19	2.0	19	90	10	60	52	10	0	36	1.36
9111792--9111976	43	4.3	43	80	4	133	29	15	23	31	1.96
9111821--9111998	43	4.2	43	78	8	186	28	14	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9111897--9111988	42	2.2	43	82	3	116	31	14	23	30	1.94
9136957--9137108	81	1.8	84	80	6	186	32	31	7	28	1.84
9139140--9139207	28	2.4	28	90	0	109	23	20	22	33	1.97
9141440--9141480	17	2.4	18	80	12	50	17	26	2	53	1.56
9153005--9153054	24	2.1	24	88	0	73	34	10	10	46	1.71
9155247--9155300	3	18.0	3	100	0	108	66	0	33	0	0.92
9155958--9155987	15	1.9	16	93	6	53	33	0	13	53	1.40
9156098--9156168	37	1.9	37	82	0	88	36	4	23	35	1.75
9156927--9157007	36	2.2	36	97	0	153	29	11	22	37	1.89
9158123--9158167	23	2.0	23	100	0	90	22	31	17	28	1.97
9158843--9158873	4	8.0	4	92	7	55	48	0	0	51	1.00
9159426--9159459	18	1.9	17	88	5	50	38	2	11	47	1.55
9163010--9163172	43	3.8	41	81	8	166	31	27	17	23	1.96
9163010--9163172	85	1.9	84	82	7	204	31	27	17	23	1.96
9169728--9169764	2	18.5	2	94	0	65	0	0	45	54	1.00
9175581--9175658	40	2.0	40	84	0	102	20	25	19	34	1.96
9181903--9181960	28	2.1	27	87	6	82	27	17	3	51	1.61
9182034--9182208	88	2.0	83	86	6	242	37	20	10	32	1.87
9182326--9182385	19	3.2	19	76	9	68	60	0	0	40	0.97
9182334--9182390	18	3.1	18	78	11	71	54	0	0	45	0.99
9182595--9182642	19	2.5	19	81	15	55	33	10	0	56	1.34
9182674--9182735	19	3.2	19	84	6	79	30	4	4	59	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9182703--9182779	21	3.7	21	67	16	61	22	3	6	67	1.30
9189107--9189131	12	2.1	12	100	0	50	44	0	0	56	0.99
9190437--9190490	27	2.0	27	92	0	90	38	3	9	48	1.53
9194118--9194169	19	2.8	19	82	2	61	63	7	5	23	1.43
9194349--9194398	3	16.7	3	100	0	100	68	0	0	32	0.90
9195989--9196100	44	2.5	44	89	2	172	31	25	16	26	1.97
9196196--9196414	44	4.9	45	63	20	118	22	25	25	27	2.00
9196178--9196414	89	2.7	89	93	1	395	22	24	26	27	2.00
9196183--9196395	45	4.8	43	66	17	123	20	25	26	27	1.99
9196162--9196439	89	3.1	89	89	1	387	21	25	24	28	1.99
9197347--9197656	51	6.3	51	87	5	431	28	23	16	32	1.96
9204998--9205048	16	3.2	16	88	0	75	52	11	13	21	1.72
9205931--9205982	19	2.8	19	82	2	61	63	7	5	23	1.43
9206192--9206243	3	17.3	3	91	0	86	65	0	3	30	1.10
9207822--9207874	22	2.4	22	83	0	70	20	26	26	26	1.99
9213274--9213308	18	1.9	18	88	11	54	40	5	11	42	1.65
9214261--9214339	28	2.8	28	86	0	95	41	16	13	27	1.86
9215718--9215748	4	7.8	4	100	0	62	77	0	0	22	0.77
9216157--9216232	21	3.7	21	92	3	120	36	9	14	39	1.78
9216177--9216255	21	3.6	24	89	6	91	35	8	13	41	1.76
9220496--9220537	19	2.3	18	95	4	75	64	11	19	4	1.44
9235753--9235778	13	2.0	13	100	0	52	61	23	0	15	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9245823--9245870	24	2.0	23	88	11	71	47	2	0	50	1.12
9245855--9245965	56	2.0	56	98	0	213	36	2	7	53	1.43
9255701--9255778	26	3.0	25	83	7	86	35	10	19	34	1.85
9286519--9286567	23	2.0	24	84	7	64	42	2	6	48	1.39
9289630--9289764	50	2.7	50	82	1	153	22	30	22	25	1.99
9290111--9290168	30	1.9	30	82	6	73	32	22	6	37	1.81
9309453--9309552	45	2.3	44	83	13	127	45	9	20	26	1.80
9309538--9309613	6	12.7	6	91	0	125	55	0	27	17	1.42
9309538--9309630	18	5.2	18	92	0	132	59	0	25	15	1.36
9309775--9309834	26	2.3	26	85	0	84	36	5	15	43	1.68
9312212--9312243	7	4.6	7	96	0	55	40	0	15	43	1.47
9313473--9313634	80	2.0	80	96	0	297	20	14	16	48	1.80
9317821--9317990	58	3.2	50	74	17	162	28	21	6	43	1.77
9317874--9317988	58	2.0	58	94	0	203	27	18	6	47	1.72
9328220--9328312	25	3.8	25	81	11	95	33	25	18	22	1.97
9338875--9338899	2	12.5	2	100	0	50	52	48	0	0	1.00
9339305--9339340	16	2.2	16	100	0	72	25	0	36	38	1.56
9339321--9339411	45	2.0	45	85	2	121	27	6	28	37	1.82
9339713--9339747	18	2.0	17	88	5	52	54	0	0	45	0.99
9339541--9339800	120	2.2	120	92	2	443	48	6	2	42	1.43
9339801--9339882	26	3.0	27	75	12	87	52	2	1	43	1.22
9347482--9347533	26	2.1	24	82	7	59	65	1	0	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9349312--9349336	2	12.5	2	100	0	50	52	48	0	0	1.00
9352079--9352173	47	2.0	47	100	0	190	34	12	14	37	1.84
9358234--9358296	27	2.5	23	82	12	63	36	4	22	36	1.75
9358904--9358947	18	2.5	17	85	10	54	50	29	9	11	1.69
9358917--9358955	18	2.2	18	90	0	60	51	23	7	17	1.71
9359346--9359384	20	2.0	20	85	10	53	46	2	0	51	1.14
9368426--9368602	64	2.8	64	81	3	212	25	23	28	22	1.99
9369063--9369102	20	1.9	21	85	10	55	17	0	52	30	1.45
9369126--9369252	60	2.1	60	88	1	184	25	16	16	40	1.89
9373288--9373322	2	17.5	2	100	0	70	51	0	48	0	1.00
9376859--9376900	21	2.0	21	95	0	75	9	11	14	64	1.50
9378845--9378907	16	3.9	16	93	0	90	38	3	34	23	1.71
9378886--9378980	45	2.1	44	84	5	120	30	4	27	37	1.76
9379141--9379175	18	2.0	17	88	5	52	54	0	0	45	0.99
9379704--9379728	13	1.9	13	100	0	50	32	32	24	12	1.91
9383224--9383313	44	2.0	44	93	0	153	34	8	22	34	1.85
9389459--9389506	21	2.3	21	88	0	69	45	20	22	10	1.81
9395290--9395318	2	14.5	2	100	0	58	48	0	0	51	1.00
9400283--9400324	21	2.0	21	86	13	61	28	0	7	64	1.20
9408453--9408491	13	3.0	13	78	14	53	25	15	7	51	1.70
9415933--9415966	12	2.9	12	86	4	52	20	0	11	67	1.21
9423649--9423702	23	2.3	23	100	0	108	11	0	48	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9423649--9423689	13	3.4	13	74	19	52	12	0	46	41	1.41
9429248--9429274	4	6.8	4	100	0	54	22	0	0	77	0.76
9429908--9429959	3	17.3	3	80	7	61	30	1	1	65	1.14
9429903--9429959	21	2.8	20	83	5	69	29	3	1	64	1.20
9432891--9432968	38	2.1	38	100	0	156	24	12	10	52	1.70
9436082--9436432	148	2.3	146	81	6	348	45	9	15	30	1.77
9441930--9441964	17	2.0	18	88	5	54	22	5	0	71	1.07
9442343--9442435	30	3.1	30	89	3	125	29	26	18	25	1.98
9445869--9445907	19	2.1	18	85	4	51	20	2	2	74	1.06
9445912--9445967	18	3.1	19	82	7	71	35	0	3	60	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128