genome.fa.s12.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  90  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29440397--29440535	61	2.3	61	82	6	158	72	5	12	9	1.25
29440451--29440526	35	2.2	35	80	4	82	76	6	9	7	1.16
29440711--29440743	17	1.9	17	93	0	57	27	18	30	24	1.98
29443467--29443496	14	2.1	15	93	6	53	40	0	0	60	0.97
29451381--29451426	6	7.7	6	97	0	83	54	13	0	32	1.39
29453091--29453477	132	2.9	132	89	0	569	24	25	20	29	1.99
29453198--29453378	44	4.1	44	65	11	100	24	24	20	29	1.99
29465580--29465637	12	4.4	14	81	14	54	70	0	3	25	1.03
29465606--29465637	3	10.7	3	100	0	64	68	0	0	31	0.90
29467809--29467847	9	4.3	9	96	0	69	53	10	2	33	1.48
29482150--29482244	43	2.2	43	92	0	163	38	12	24	24	1.90
29484374--29484426	19	2.6	21	82	11	58	22	1	24	50	1.59
29488662--29488697	13	2.8	13	82	0	54	38	8	19	33	1.82
29502111--29502269	79	2.0	79	95	3	284	37	3	10	48	1.56
29506861--29506902	19	2.2	19	87	8	59	28	0	9	61	1.27
29512836--29512897	28	2.3	27	83	8	72	56	3	11	29	1.50
29513292--29513349	25	2.2	27	90	6	93	48	6	5	39	1.52
29517533--29517559	14	1.9	14	100	0	54	48	7	7	37	1.59
29518010--29518234	113	2.0	111	93	1	387	36	16	12	35	1.86
29522022--29522050	2	15.0	2	92	7	51	51	0	0	48	1.00
29531249--29531291	18	2.4	18	88	0	68	32	6	18	41	1.77
29535687--29535784	50	2.0	50	87	2	144	47	12	9	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29538108--29538135	9	3.1	9	100	0	56	46	10	10	32	1.73
29538188--29538228	17	2.4	17	95	0	73	24	29	0	46	1.53
29541724--29541773	11	4.3	11	78	14	55	38	0	6	56	1.24
29546718--29546793	11	6.8	11	72	24	61	55	0	1	43	1.08
29566996--29567619	311	2.0	312	99	0	1241	40	16	13	29	1.86
29571280--29571637	179	2.0	179	90	4	562	40	14	13	31	1.85
29571853--29571881	11	2.5	12	94	5	51	27	0	0	72	0.85
29571996--29572042	20	2.2	22	77	7	53	25	10	2	61	1.39
29572639--29572665	2	13.5	2	100	0	54	48	0	0	51	1.00
29573853--29573972	30	4.2	28	65	28	67	53	5	5	36	1.45
29573803--29573974	83	2.1	84	98	1	337	52	4	4	38	1.43
29575413--29575463	24	2.1	24	92	0	84	25	9	15	49	1.75
29580519--29580588	29	2.3	29	85	4	86	22	17	12	47	1.81
29589966--29590014	18	2.5	19	80	12	55	30	0	2	67	1.02
29591144--29591183	18	2.2	18	86	4	53	57	0	35	7	1.27
29593564--29593594	10	3.1	10	90	0	53	48	22	0	29	1.51
29596506--29596552	24	2.0	24	91	8	78	53	0	19	27	1.45
29598695--29598791	46	2.1	46	90	1	151	34	7	9	49	1.62
29609850--29609901	23	2.2	25	86	6	72	51	3	5	38	1.44
29626310--29626348	20	1.9	20	89	5	60	43	0	23	33	1.54
29628212--29628272	16	3.4	18	76	17	63	22	29	0	47	1.52
29628958--29628998	19	2.1	20	86	4	57	31	9	2	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29630360--29630398	12	3.2	12	85	0	51	20	23	5	51	1.67
29630648--29630840	50	3.7	50	80	9	176	23	28	20	27	1.99
29633894--29633929	15	2.4	15	90	0	54	27	22	11	38	1.88
29634701--29634725	9	2.8	9	100	0	50	76	0	24	0	0.80
29635113--29635141	11	2.6	11	100	0	58	0	6	0	93	0.36
29645583--29645615	15	2.2	15	89	10	50	33	3	18	45	1.65
29647945--29648002	5	12.4	5	82	14	79	39	0	0	60	0.97
29647947--29648002	22	2.4	24	88	8	80	41	0	0	58	0.98
29651847--29651954	40	2.7	41	75	7	105	36	18	26	18	1.94
29659276--29659317	13	3.2	13	86	0	57	40	9	2	47	1.49
29659638--29659986	9	40.2	9	71	16	247	46	19	2	31	1.61
29659644--29659960	16	18.9	16	70	17	175	47	19	1	31	1.59
29659667--29659934	78	3.4	78	88	5	350	47	19	1	32	1.58
29667285--29667332	21	2.3	21	89	7	71	35	18	43	2	1.62
29667317--29667344	12	2.3	12	100	0	56	39	17	42	0	1.50
29669025--29669055	9	3.4	9	90	0	53	25	12	22	38	1.90
29669776--29669806	5	6.2	5	100	0	62	22	19	19	38	1.93
29675748--29675797	26	1.9	26	84	8	66	30	0	2	68	1.01
29681503--29681607	41	2.5	42	87	3	149	34	24	11	29	1.91
29682636--29682675	14	2.8	14	84	3	53	30	2	42	25	1.68
29689698--29689825	43	3.0	43	78	12	145	21	17	28	32	1.96
29691311--29691335	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29697178--29697228	24	2.1	24	92	0	84	33	13	31	21	1.92
29704238--29704314	17	4.8	17	73	17	51	58	2	7	31	1.40
29707069--29707751	341	2.0	342	99	0	1359	40	10	11	37	1.76
29708293--29708327	17	2.1	17	88	0	52	51	0	14	34	1.42
29714729--29714779	26	2.0	25	85	14	68	45	9	0	45	1.36
29716415--29716444	14	2.1	14	100	0	60	30	13	20	36	1.90
29716544--29716606	27	2.4	27	97	2	119	44	9	0	46	1.36
29716656--29716734	27	2.9	27	96	0	140	31	22	31	13	1.93
29716985--29717022	20	1.9	20	89	10	60	47	7	5	39	1.55
29717920--29717979	26	2.3	27	94	2	104	51	0	5	43	1.23
29723431--29723654	113	2.0	113	98	0	430	28	16	19	36	1.93
29728503--29728548	23	2.0	23	100	0	92	21	17	13	47	1.81
29735971--29736014	20	2.2	20	84	8	54	54	4	11	29	1.56
29740606--29740647	17	2.5	17	80	3	50	52	0	9	38	1.34
29745430--29745459	15	2.0	15	100	0	60	40	0	26	33	1.57
29771861--29771886	1	26.0	1	100	0	52	100	0	0	0	0.00
29772742--29772769	10	2.8	10	100	0	56	39	10	0	50	1.37
29773770--29773831	31	2.0	31	96	0	115	50	19	27	3	1.63
29774759--29774911	27	5.8	27	68	13	95	42	9	0	47	1.36
29778033--29778141	54	2.0	54	90	0	173	42	21	4	32	1.73
29782148--29782185	18	2.1	18	90	0	58	5	15	0	78	0.91
29782148--29782194	18	2.6	18	83	6	51	4	14	4	76	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29784855--29784963	54	2.0	54	89	0	164	42	20	4	33	1.72
29796314--29796654	168	2.0	168	91	1	558	46	19	22	10	1.81
29797454--29797602	27	5.6	26	69	20	94	38	12	0	49	1.40
29797474--29797518	23	2.0	22	82	4	54	40	13	0	46	1.43
29797446--29797599	53	2.9	54	75	8	172	39	11	0	48	1.40
29802005--29802081	27	2.9	27	78	0	91	24	35	9	31	1.87
29803851--29803921	9	8.1	9	69	16	51	61	2	1	33	1.19
29803851--29803919	25	2.7	26	86	8	88	62	2	1	33	1.19
29804048--29804136	28	3.1	28	73	10	74	62	3	4	29	1.31
29804063--29804144	28	2.9	27	79	13	85	60	4	3	30	1.34
29805655--29805688	14	2.5	14	90	4	52	29	0	0	70	0.87
29805653--29805696	18	2.5	17	85	7	61	27	0	0	72	0.85
29810897--29810941	13	3.5	13	87	6	65	28	4	15	51	1.63
29811520--29811554	18	1.9	18	100	0	70	28	40	14	17	1.88
29812135--29812494	196	1.8	196	89	0	567	26	13	23	36	1.91
29815199--29815393	54	3.7	54	81	13	253	24	43	4	28	1.72
29815201--29815418	24	8.6	23	76	16	166	24	43	4	27	1.72
29815201--29815417	102	2.1	102	92	1	355	24	43	4	27	1.72
29817980--29818122	74	1.9	73	91	1	232	27	18	18	35	1.94
29823419--29823476	24	2.4	24	88	0	80	34	10	24	31	1.89
29823784--29824456	50	13.3	50	70	4	452	30	21	21	26	1.99
29823753--29824459	100	7.0	100	84	3	718	31	21	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29826396--29826611	73	2.9	73	91	0	351	29	18	17	34	1.94
29834460--29834498	21	1.9	20	94	5	69	56	5	12	25	1.57
29836750--29836948	66	3.2	64	68	19	177	41	2	6	49	1.42
29836785--29836972	61	3.1	61	69	17	192	42	1	6	48	1.39
29836837--29836888	15	3.6	15	80	12	56	44	0	1	53	1.11
29836712--29837009	120	2.5	121	93	1	501	42	2	5	49	1.37
29839832--29839872	2	20.5	2	100	0	82	0	0	48	51	1.00
29843334--29843385	16	3.2	16	94	0	86	28	0	36	34	1.58
29843366--29843460	45	2.1	44	88	1	136	32	6	27	33	1.82
29855094--29855130	16	2.3	16	90	9	58	45	10	2	40	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128