genome.fa.s12.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  105  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35259983--35260181	44	4.5	44	78	1	193	28	21	22	28	1.99
35259983--35260181	88	2.3	87	82	3	229	28	21	22	28	1.99
35260102--35260318	120	1.8	120	91	2	364	24	25	19	30	1.98
35260343--35260516	50	3.5	50	71	0	159	25	24	20	29	1.99
35260316--35260504	100	1.9	100	91	0	306	26	22	20	29	1.99
35260538--35260679	45	3.2	45	84	2	214	26	21	22	29	1.99
35260716--35260854	44	3.2	44	64	8	111	23	26	25	24	2.00
35260679--35260911	88	2.7	87	90	4	371	19	24	27	28	1.99
35268138--35268195	22	2.6	22	81	7	64	41	17	5	36	1.72
35268174--35268228	21	2.7	21	91	5	87	38	14	9	38	1.78
35269182--35269244	32	2.0	32	90	6	101	52	17	1	28	1.54
35269190--35269260	32	2.2	32	80	5	81	53	19	1	25	1.53
35270678--35270742	21	3.1	21	93	4	105	46	15	4	33	1.66
35273583--35273670	44	2.0	44	86	4	124	46	11	19	22	1.81
35275109--35275164	27	2.0	28	93	3	96	41	7	0	51	1.29
35275223--35275303	27	3.0	27	88	0	117	27	20	40	11	1.86
35275262--35275325	27	2.4	27	83	0	74	21	28	34	15	1.94
35275613--35275638	3	8.7	3	100	0	52	34	0	0	65	0.93
35275644--35275761	61	1.9	62	83	13	154	33	0	11	54	1.37
35276284--35276320	18	2.1	18	89	0	56	35	5	43	16	1.71
35278379--35278413	18	1.9	19	88	11	56	37	0	2	60	1.12
35278562--35278628	27	2.5	28	90	7	104	49	0	10	40	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35278665--35278704	19	2.2	18	90	4	62	70	5	0	25	1.08
35278665--35278715	18	2.7	19	87	3	68	66	7	0	25	1.18
35279040--35279193	10	15.7	10	63	24	53	1	31	0	67	0.99
35279014--35279168	38	4.4	34	79	17	142	1	31	0	67	0.99
35279080--35279190	18	6.1	18	72	15	86	1	31	0	66	1.02
35279072--35279181	38	2.9	38	90	2	159	1	33	0	64	1.04
35279111--35279190	34	2.8	28	72	24	76	1	31	0	67	0.99
35279066--35279145	14	5.6	14	70	14	56	1	33	0	65	1.01
35279151--35279193	22	1.9	23	85	4	61	2	27	0	69	1.00
35279015--35279195	18	10.4	18	65	23	70	1	32	0	66	0.99
35279113--35279194	28	2.7	30	75	19	89	1	31	0	67	0.99
35279019--35279207	38	4.8	40	77	13	98	1	33	0	65	1.00
35279349--35279381	9	3.7	9	95	0	57	0	6	3	90	0.52
35279348--35279392	9	5.1	9	83	5	56	2	4	8	84	0.84
35279348--35279392	17	2.6	17	82	3	54	2	4	8	84	0.84
35279393--35279461	28	2.5	29	88	6	99	47	1	11	39	1.49
35279726--35279809	29	2.9	29	87	8	125	25	32	28	14	1.94
35280048--35280147	37	2.7	37	81	4	112	41	3	20	36	1.67
35280689--35280720	14	2.3	14	94	0	55	28	3	6	62	1.34
35280967--35281022	28	2.0	28	100	0	112	46	3	28	21	1.68
35283715--35283942	40	5.7	40	86	0	321	31	21	16	30	1.95
35283715--35283942	80	2.8	80	91	0	357	31	21	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35284353--35284398	20	2.3	20	78	14	51	8	6	8	76	1.17
35285671--35286012	27	12.7	26	84	4	312	18	17	21	42	1.89
35285671--35286012	54	6.3	54	82	3	393	18	17	21	42	1.89
35285673--35286011	81	4.2	81	84	5	407	18	17	21	42	1.89
35289199--35289228	14	2.1	14	93	0	51	40	0	13	46	1.43
35292538--35292565	13	2.2	13	100	0	56	42	14	14	28	1.84
35294961--35295015	17	3.2	17	79	5	65	21	5	10	61	1.49
35295930--35296040	32	3.4	32	82	6	125	45	10	8	36	1.69
35302873--35302933	30	2.0	30	83	3	77	26	27	4	40	1.76
35302887--35302963	25	2.8	29	80	17	108	23	24	6	45	1.76
35308320--35308382	21	3.0	21	83	6	65	33	1	1	63	1.13
35308330--35308382	22	2.5	21	84	9	63	32	1	1	64	1.15
35312136--35312176	20	2.0	21	85	4	57	31	17	19	31	1.95
35318799--35318848	24	2.0	25	85	11	68	42	0	0	58	0.98
35318826--35318859	16	2.1	16	88	0	50	44	0	0	55	0.99
35319815--35319851	17	2.2	18	85	9	51	51	0	0	48	1.00
35320624--35320670	6	7.8	6	78	7	51	63	29	4	2	1.25
35321760--35321846	29	3.0	29	79	0	102	22	33	27	16	1.95
35324430--35324469	15	2.5	16	92	8	64	42	0	2	55	1.13
35324426--35324469	23	1.9	23	86	9	63	38	0	2	59	1.10
35338503--35338560	22	2.7	21	76	10	53	39	17	6	36	1.76
35339115--35339232	44	2.7	44	86	0	146	25	21	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35339327--35340107	45	17.4	45	87	1	1030	28	23	17	30	1.97
35348017--35348079	30	2.1	30	93	0	108	39	4	19	36	1.72
35349989--35350027	20	2.0	20	84	0	51	69	5	17	7	1.32
35361270--35361545	138	2.0	138	97	0	525	34	22	11	31	1.89
35369034--35369268	117	2.0	118	99	0	463	29	22	9	38	1.85
35371947--35372004	30	1.9	30	85	0	80	51	15	5	27	1.64
35376194--35376218	13	1.9	13	100	0	50	40	0	0	60	0.97
35376162--35376214	25	2.1	25	92	0	88	35	5	5	52	1.49
35377961--35378016	29	2.0	29	86	6	80	48	7	10	33	1.65
35377967--35378026	29	2.1	29	81	12	70	48	6	13	31	1.68
35378360--35378433	31	2.4	32	82	11	91	25	8	21	44	1.79
35378421--35378469	20	2.5	20	96	0	89	36	12	26	24	1.91
35378787--35378870	38	2.3	38	80	10	102	32	1	2	64	1.14
35378807--35378861	20	2.8	20	75	5	60	36	0	3	60	1.15
35393427--35394144	359	2.0	359	94	0	1256	30	24	14	30	1.95
35394571--35395208	325	2.0	314	90	4	999	33	22	15	28	1.95
35398371--35398419	24	2.0	24	100	0	98	20	8	12	59	1.58
35400309--35400364	25	2.2	25	80	0	76	21	32	35	10	1.88
35400346--35400373	13	2.2	13	100	0	56	17	25	42	14	1.87
35405272--35405410	46	3.0	45	87	4	188	36	10	24	28	1.89
35412893--35413096	90	2.3	90	86	1	266	51	13	7	26	1.67
35413569--35413771	54	3.8	53	73	10	171	26	22	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35413811--35413898	43	2.0	43	95	0	158	31	15	27	25	1.96
35417587--35417620	13	2.6	13	95	0	59	47	0	5	47	1.26
35436011--35436061	15	3.5	15	75	2	50	33	45	0	21	1.52
35436011--35436069	22	2.7	22	82	10	84	33	44	0	22	1.53
35436270--35436325	21	2.7	20	78	10	67	41	37	0	21	1.53
35436329--35436358	15	2.0	15	93	0	51	43	36	0	20	1.52
35436566--35436805	41	5.9	41	86	3	299	26	29	22	21	1.99
35436566--35436805	82	2.9	81	88	2	336	26	29	22	21	1.99
35436566--35436805	123	2.0	123	86	5	342	26	29	22	21	1.99
35436857--35436972	40	3.0	40	78	7	121	24	25	19	31	1.98
35438976--35439052	31	2.5	31	85	6	93	23	38	22	15	1.92
35443770--35443816	24	1.9	25	86	4	69	36	0	38	25	1.56
35444502--35444822	27	11.9	27	83	4	371	41	20	17	20	1.90
35447754--35448018	27	9.9	27	85	3	322	41	22	17	18	1.90
35447753--35448018	81	3.3	81	88	2	376	41	22	17	18	1.90
35449419--35449530	56	2.0	56	96	0	206	30	23	3	42	1.71
35454214--35454354	40	3.5	40	86	0	203	12	14	26	46	1.80
35460178--35460224	22	2.1	22	88	11	69	29	21	2	46	1.63
35464197--35464253	24	2.4	24	96	0	105	33	10	31	24	1.89
35475617--35475702	42	2.0	42	100	0	172	24	11	29	34	1.91
35479137--35479162	5	5.2	5	100	0	52	19	57	0	23	1.40
35481542--35481826	19	14.5	19	71	12	141	55	2	6	36	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35481552--35481616	18	3.4	18	80	6	58	60	1	4	33	1.27
35481542--35481710	20	8.9	18	72	15	74	56	1	5	37	1.30
35481707--35481764	10	5.7	10	73	20	50	55	5	3	36	1.39
35481560--35481826	20	13.7	19	73	15	120	54	2	6	36	1.39
35481974--35482003	3	10.0	3	92	0	51	63	0	36	0	0.95
35482015--35482133	20	6.2	18	70	17	80	35	5	1	57	1.33
35482085--35482140	9	6.2	9	75	20	55	32	3	0	64	1.11
35482764--35482788	2	12.5	2	100	0	50	52	0	48	0	1.00
35489047--35489079	14	2.4	14	89	0	57	48	0	24	27	1.51
35496862--35496895	9	3.8	9	100	0	68	8	32	0	58	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128