genome.fa.s12.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  91  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29856087--29856122	16	2.3	15	90	4	54	58	5	2	33	1.36
29858606--29858645	18	2.0	21	86	13	59	55	2	0	42	1.13
29875917--29875963	17	2.7	18	77	12	53	21	2	4	72	1.12
29877447--29877512	32	2.1	32	94	0	114	28	21	0	50	1.49
29880526--29880565	21	1.9	21	90	10	64	55	7	12	25	1.63
29881639--29881689	27	1.9	27	84	4	68	31	0	3	64	1.11
29883907--29883983	38	2.0	39	82	7	95	41	2	5	50	1.38
29884054--29884083	14	2.1	15	93	6	53	56	0	0	43	0.99
29889765--29889803	16	2.4	16	86	0	60	61	2	0	35	1.10
29890016--29890079	23	2.8	23	70	11	60	56	1	0	42	1.09
29891159--29891517	17	21.0	17	68	14	143	45	11	13	29	1.78
29891314--29891518	52	3.9	54	74	11	140	43	12	14	29	1.82
29891342--29891513	89	1.9	88	84	3	229	43	12	14	30	1.82
29891158--29891517	35	10.5	35	66	15	137	45	11	13	30	1.78
29891158--29891517	18	21.0	18	68	14	156	45	11	13	30	1.78
29891471--29891557	43	2.0	43	84	4	113	50	13	11	24	1.75
29891599--29891648	26	1.9	27	92	8	86	46	16	10	28	1.78
29891667--29891705	17	2.3	17	86	8	53	43	7	15	33	1.75
29892956--29893086	29	4.4	29	77	12	133	38	3	22	34	1.73
29893558--29893605	19	2.6	18	81	18	55	0	31	0	68	0.90
29897508--29897548	21	2.0	21	90	0	64	24	4	56	14	1.58
29901125--29901435	42	7.4	42	93	0	480	24	17	9	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29906903--29906979	9	7.8	9	72	18	55	61	2	2	33	1.24
29906901--29906986	19	4.3	19	70	17	59	62	3	2	31	1.24
29913278--29913321	23	1.9	23	90	0	70	61	15	11	11	1.57
29921662--29921751	39	2.4	37	79	17	96	32	4	1	62	1.22
29932050--29932139	39	2.4	37	79	17	96	32	4	1	62	1.22
29941580--29941882	149	2.0	149	99	0	597	36	5	6	51	1.51
29944095--29944131	16	2.2	17	95	4	67	29	0	0	70	0.88
29944240--29944356	31	3.9	31	72	18	111	24	17	11	45	1.83
29952293--29952387	3	31.7	3	85	0	91	33	7	1	57	1.33
29956811--29956856	17	2.8	18	84	15	64	28	41	30	0	1.56
29972484--29972532	6	8.2	6	93	0	80	20	34	0	44	1.52
29977823--29977898	30	2.5	30	93	0	125	28	26	14	30	1.95
29982543--29982627	37	2.3	37	76	9	86	38	1	1	58	1.13
29983038--29983106	30	2.3	30	82	0	75	53	7	13	26	1.65
29984585--29984628	22	2.0	22	100	0	88	13	18	9	59	1.60
29989085--29989133	9	5.4	9	90	9	82	26	10	20	42	1.84
29990389--29990432	18	2.4	18	96	0	79	50	11	22	15	1.76
29992248--29992307	11	5.5	11	75	18	54	48	0	28	23	1.51
29992247--29992298	22	2.3	23	80	9	63	48	0	26	25	1.52
29993175--29993240	32	2.1	32	85	5	89	36	7	15	40	1.75
29998237--29998267	9	3.4	9	100	0	62	25	9	19	45	1.81
30007886--30007947	14	4.5	14	77	16	51	40	0	3	56	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30009876--30009916	18	2.3	18	100	0	82	60	4	4	29	1.38
30010119--30010186	29	2.3	29	80	7	75	41	19	16	23	1.90
30013650--30013684	17	2.1	17	89	10	54	34	17	0	48	1.47
30018145--30018170	13	2.0	13	100	0	52	30	23	0	46	1.53
30019432--30019596	43	3.8	43	72	16	153	22	16	28	32	1.95
30027920--30028123	46	4.4	46	90	0	291	23	12	20	43	1.86
30028668--30028693	11	2.4	11	100	0	52	15	0	0	84	0.62
30028657--30028692	16	2.2	17	90	5	56	19	2	0	77	0.88
30029443--30029656	3	71.3	3	100	0	428	33	0	0	66	0.92
30043697--30043722	11	2.4	11	100	0	52	15	0	0	84	0.62
30043686--30043721	16	2.2	17	90	5	56	19	2	0	77	0.88
30044468--30044682	3	71.7	3	100	0	430	33	0	0	66	0.92
30046656--30046823	55	3.0	56	94	4	295	21	20	13	44	1.85
30046670--30046842	55	3.1	55	86	5	161	24	20	13	42	1.87
30048087--30048128	22	1.9	22	85	9	59	33	2	2	61	1.21
30053687--30053740	18	3.0	18	83	5	56	33	0	7	59	1.25
30053723--30053747	11	2.3	11	100	0	50	24	0	8	68	1.16
30054648--30054689	16	2.6	16	88	3	57	38	2	0	59	1.10
30055024--30055203	43	4.2	42	87	7	238	30	20	23	25	1.98
30055024--30055218	85	2.3	85	84	6	243	30	21	23	24	1.99
30055024--30055245	85	2.6	85	82	7	211	30	19	23	26	1.98
30055219--30055907	344	2.0	344	99	0	1362	40	14	11	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30056016--30056062	12	3.9	12	88	0	67	2	36	14	46	1.57
30056053--30056100	21	2.3	21	88	0	69	6	35	18	39	1.76
30071783--30072120	147	2.3	147	80	5	371	36	21	14	26	1.93
30073077--30073114	17	2.4	16	86	8	51	39	31	2	26	1.70
30081501--30081537	18	2.1	18	100	0	74	27	5	16	51	1.66
30082451--30082564	54	2.1	55	93	3	196	23	19	13	43	1.86
30083539--30083569	15	2.1	15	93	0	53	19	0	9	70	1.14
30083840--30083881	22	1.9	22	90	9	68	33	2	0	64	1.07
30084437--30084471	18	1.9	18	88	11	54	57	0	2	40	1.14
30087749--30088054	152	2.0	153	98	1	587	34	11	15	38	1.83
30091668--30091716	25	1.9	26	88	12	75	38	10	24	26	1.87
30091947--30092011	18	3.4	18	74	6	58	30	0	6	63	1.19
30094003--30094031	14	2.1	14	93	6	51	62	0	6	31	1.22
30107702--30107738	3	12.3	3	100	0	74	32	0	0	67	0.91
30115229--30115286	29	2.0	29	82	3	71	36	18	13	31	1.90
30117620--30118175	278	2.0	278	99	0	1103	40	18	10	30	1.84
30120679--30120709	16	1.9	16	93	0	53	38	3	9	48	1.52
30126033--30126080	25	2.0	24	88	12	71	29	20	2	47	1.61
30126674--30126718	21	2.1	22	87	4	65	24	2	51	22	1.60
30126741--30127004	144	1.9	136	81	10	320	31	9	12	47	1.73
30126778--30127061	144	2.0	144	79	6	306	33	8	11	46	1.72
30127821--30127850	15	2.0	15	93	0	51	43	33	0	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30127868--30128030	88	1.8	89	90	1	265	44	27	1	26	1.62
30127870--30128054	88	2.1	88	84	5	248	44	27	2	26	1.66
30128555--30128681	41	3.1	41	87	0	128	29	25	22	22	1.99
30134147--30134198	24	2.2	24	100	0	104	15	19	13	51	1.75
30134375--30134402	1	28.0	1	100	0	56	0	0	100	0	0.00
30145371--30145434	31	2.1	31	100	0	128	26	9	23	40	1.85
30154043--30154094	25	2.1	25	100	0	104	30	25	19	25	1.98
30157440--30157464	12	2.1	12	100	0	50	24	36	24	16	1.94
30157624--30157735	9	12.4	9	85	0	134	42	23	7	26	1.79
30157774--30157808	6	5.8	6	100	0	70	17	0	17	65	1.27
30157774--30157821	18	2.5	20	90	6	73	20	0	12	66	1.24
30159846--30159870	8	3.1	8	100	0	50	60	12	0	28	1.32
30165051--30165128	41	2.0	39	82	9	97	46	14	11	28	1.79
30176295--30176323	12	2.3	13	94	5	51	17	0	10	72	1.11
30178079--30178244	83	2.0	82	88	5	246	33	5	13	48	1.65
30178646--30178690	19	2.4	18	82	10	54	71	6	0	22	1.09
30199415--30199504	45	2.0	45	91	0	144	44	15	15	24	1.85
30205244--30205309	27	2.5	27	87	2	89	37	10	1	50	1.47
30205244--30205313	26	2.7	26	82	6	88	38	11	1	48	1.48
30205455--30205640	4	45.8	4	74	19	113	69	0	30	0	0.89
30205457--30205654	41	5.1	39	70	19	146	69	0	30	0	0.89
30205479--30205539	19	3.4	19	78	17	85	63	0	36	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30205463--30205551	34	2.6	34	96	1	160	66	0	33	0	0.92
30205513--30205593	23	3.4	23	74	19	76	66	0	33	0	0.92
30205473--30205646	57	3.1	56	79	12	155	68	0	31	0	0.89
30205565--30205654	3	29.3	3	77	12	53	70	0	30	0	0.88
30205461--30205646	34	5.1	34	76	18	112	69	0	30	0	0.89
30205590--30205651	22	2.9	22	74	13	67	74	0	25	0	0.82
30205736--30205819	24	3.3	26	75	18	70	30	4	9	54	1.53
30206377--30206427	23	2.3	23	93	3	86	56	1	3	37	1.29
30206731--30206797	35	1.9	35	93	0	98	49	1	5	43	1.36
30209508--30209560	27	2.0	27	100	0	106	15	30	32	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128