genome.fa.s12.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  23  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6903045--6903130	46	1.9	46	86	9	124	36	25	5	32	1.80
6909168--6909196	2	15.0	2	92	7	51	48	0	0	51	1.00
6927468--6927710	39	6.2	39	77	0	207	19	25	20	34	1.96
6927466--6927710	78	3.1	78	81	2	276	19	25	20	34	1.96
6927470--6927721	117	2.2	117	80	1	272	20	25	20	33	1.97
6931093--6931328	85	2.8	85	83	1	269	36	25	14	24	1.93
6931130--6931328	43	4.7	42	71	10	136	36	26	14	22	1.93
6931304--6931353	25	2.0	25	88	0	73	26	36	20	18	1.95
6936929--6937120	85	2.3	85	86	2	262	35	23	15	25	1.94
6936966--6937156	85	2.2	84	80	2	202	37	24	14	24	1.92
6941965--6942033	27	2.5	27	81	11	70	23	5	18	52	1.67
6943199--6943275	14	5.0	15	71	20	52	44	15	7	32	1.75
6943203--6943269	34	1.9	35	87	3	100	47	13	7	31	1.70
6951986--6952056	35	2.0	35	100	0	142	33	14	8	43	1.75
6974070--6974111	16	2.5	17	88	11	61	38	0	4	57	1.20
6987901--6987928	3	9.3	3	100	0	56	32	0	0	67	0.91
6988012--6988051	20	2.0	20	90	5	62	45	2	0	52	1.14
6988384--6988699	109	2.9	107	86	7	451	30	16	18	33	1.94
6992154--6992227	39	2.0	36	81	7	85	79	5	10	4	1.02
6993115--6993176	7	9.0	7	84	10	83	70	0	12	16	1.16
6993115--6993176	13	4.5	14	84	10	83	70	0	12	16	1.16
6993125--6993176	20	2.6	20	90	0	86	69	0	15	15	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6994591--6994843	44	5.8	44	69	10	151	30	20	20	28	1.98
6994639--6994928	85	3.4	84	73	14	275	31	20	20	28	1.97
6994591--6994916	175	1.9	175	90	1	519	30	20	19	28	1.97
6995183--6995571	45	8.9	44	65	16	207	25	22	26	25	2.00
6995158--6995598	88	5.0	88	93	0	740	26	22	26	24	2.00
6995158--6995600	175	2.5	176	93	0	744	26	22	26	24	2.00
6995614--6995895	96	2.9	96	94	0	476	30	18	21	29	1.97
6995899--6996164	142	1.9	142	90	1	426	31	19	21	27	1.97
6997607--6997833	3	75.7	3	100	0	454	33	0	0	66	0.92
6997862--6998493	109	5.8	109	94	3	1053	30	16	18	35	1.93
7003916--7003962	2	23.5	2	100	0	94	51	48	0	0	1.00
7013522--7013589	34	2.0	34	82	5	84	29	19	26	25	1.98
7018741--7018792	25	2.1	24	83	16	63	46	11	3	38	1.59
7027107--7027185	41	1.9	41	89	0	122	35	16	20	27	1.94
7041133--7041259	63	2.0	63	82	10	152	25	18	6	50	1.70
7055667--7055706	12	3.3	12	85	0	62	25	40	25	10	1.86
7055684--7055789	54	2.0	54	86	0	149	24	26	31	17	1.97
7069817--7069844	14	2.0	14	100	0	56	21	7	21	50	1.72
7081005--7081223	39	5.6	39	86	4	307	44	19	4	32	1.69
7091622--7092017	196	2.0	196	91	0	639	28	21	14	35	1.92
7097058--7097127	33	2.1	33	81	5	79	31	24	24	20	1.98
7097521--7097756	27	8.8	27	87	5	311	16	19	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7097520--7097756	107	2.2	107	90	4	363	16	19	20	43	1.88
7106588--7106648	25	2.4	25	81	10	72	57	0	3	39	1.15
7122121--7122311	76	2.5	76	82	3	213	23	19	21	35	1.96
7125957--7126154	76	2.6	76	88	1	281	25	22	19	32	1.98
7128851--7128884	17	1.9	17	88	5	50	23	23	29	23	1.99
7129025--7129075	14	3.6	14	79	7	59	17	17	7	56	1.63
7129053--7129110	28	2.1	28	83	0	71	24	15	5	55	1.61
7129220--7129317	50	1.9	52	89	4	155	43	0	8	47	1.32
7136780--7136902	64	1.9	64	88	0	183	34	17	22	26	1.96
7140956--7141132	49	3.6	49	82	1	201	41	19	18	20	1.90
7140999--7141158	49	3.2	49	85	1	176	42	16	20	21	1.89
7140956--7141158	99	2.1	99	80	1	228	42	17	19	20	1.89
7148693--7148729	18	2.1	18	89	0	56	40	16	21	21	1.91
7152803--7152852	21	2.3	21	79	3	55	54	22	2	22	1.55
7153356--7153394	16	2.5	15	87	8	51	41	10	0	48	1.37
7155776--7155813	20	2.0	20	89	5	60	44	7	5	42	1.56
7155863--7156776	464	2.0	463	94	0	1605	41	12	14	31	1.83
7160731--7161025	147	2.0	148	98	0	574	31	11	24	32	1.91
7171414--7171455	19	2.2	19	87	8	59	42	9	0	47	1.36
7184088--7184120	18	1.9	18	88	11	52	42	0	0	57	0.98
7190513--7191018	253	2.0	253	100	0	1012	36	20	16	25	1.94
7192872--7192918	2	23.5	2	95	0	58	42	0	8	48	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7193892--7194160	41	6.6	41	88	1	378	28	20	27	23	1.99
7195367--7195399	17	1.9	17	93	0	57	84	3	9	3	0.82
7204546--7204818	151	1.8	151	88	0	420	26	18	27	27	1.98
7208060--7208084	12	2.1	12	100	0	50	40	20	16	24	1.91
7209922--7210010	31	3.0	30	78	4	99	34	11	13	40	1.80
7218247--7218306	28	2.2	27	84	3	75	48	1	1	48	1.21
7224170--7224244	24	3.0	26	62	15	68	45	25	4	25	1.71
7230253--7230294	22	2.0	21	85	4	57	23	7	0	69	1.13
7235427--7235464	19	2.0	19	89	0	58	47	5	0	47	1.24
7235960--7235992	17	1.9	17	93	0	57	39	0	3	57	1.14
7236241--7236279	20	2.0	20	94	0	69	69	2	0	28	1.02
7236449--7236492	15	2.8	16	83	12	56	52	0	4	43	1.22
7240843--7240883	21	2.0	21	90	9	66	26	17	26	29	1.97
7241935--7241970	15	2.4	15	90	0	54	16	2	36	44	1.63
7241947--7241994	15	3.2	15	84	0	60	27	6	27	39	1.80
7243661--7243730	21	3.3	21	82	7	88	35	35	17	11	1.85
7252002--7252291	18	16.5	17	73	12	167	45	9	14	30	1.77
7252070--7252291	123	1.8	122	92	2	374	44	9	15	31	1.77
7252311--7252505	18	10.7	18	68	12	85	43	9	9	37	1.70
7252350--7252441	35	2.6	35	87	0	130	45	10	11	31	1.76
7251960--7252499	17	30.6	17	67	14	127	43	9	12	35	1.75
7252312--7252499	35	5.2	35	71	17	109	42	9	10	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7252963--7253004	6	6.8	6	84	12	50	0	11	2	85	0.68
7252962--7253007	7	6.9	7	83	11	53	0	10	2	86	0.64
7252963--7253005	13	3.4	13	90	3	61	0	11	2	86	0.67
7252955--7253006	20	2.7	20	84	3	70	0	11	3	84	0.74
7253181--7253242	6	10.5	6	74	22	60	3	16	0	80	0.83
7253177--7253245	18	3.6	20	81	15	92	4	15	0	79	0.88
7253177--7253245	28	2.4	29	86	11	99	4	15	0	79	0.88
7253181--7253231	24	2.1	24	89	7	77	1	15	0	82	0.76
7253339--7253390	21	2.5	21	84	9	63	0	34	0	65	0.93
7253347--7253409	33	1.9	33	90	6	101	0	36	0	63	0.95
7254460--7255484	76	13.4	76	84	8	1149	35	20	15	28	1.94
7254460--7255479	153	6.7	150	83	9	1119	35	20	15	28	1.94
7254494--7255479	234	4.3	227	86	6	1201	35	20	16	27	1.94
7256338--7256430	13	7.4	12	75	13	64	4	6	5	83	0.89
7256338--7256385	21	2.3	21	85	7	62	2	12	4	81	0.93
7256359--7256430	1	72.0	1	74	0	54	4	2	6	86	0.79
7256350--7256408	8	7.9	8	83	12	54	6	6	3	83	0.91
7256350--7256390	21	2.0	21	90	0	64	4	9	4	80	1.00
7256351--7256431	37	2.2	37	82	12	96	6	3	6	83	0.88
7256380--7256427	8	5.8	8	85	9	60	6	0	6	87	0.67
7256359--7256430	16	4.7	15	75	6	65	4	2	6	86	0.79
7267195--7267512	17	18.2	17	70	16	66	45	10	13	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7267226--7267416	52	3.6	52	76	7	179	47	11	14	26	1.78
7267292--7267513	123	1.8	122	91	2	365	45	9	13	30	1.77
7267572--7267651	35	2.3	35	86	4	108	46	10	12	31	1.75
7267223--7267650	18	24.5	18	72	12	205	44	9	12	33	1.74
7267660--7267706	17	2.8	17	86	0	67	36	8	8	46	1.65
7268151--7268196	13	3.5	13	84	3	65	0	6	6	86	0.69
7268208--7268310	36	2.9	35	89	5	154	6	22	47	23	1.75
7268386--7268478	9	10.0	9	80	11	73	4	16	0	79	0.88
7268386--7268475	17	5.2	17	71	14	67	4	15	0	80	0.87
7268397--7268475	6	13.5	6	70	21	53	3	16	0	79	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128