genome.fa.s12.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  101  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33615433--33615488	23	2.5	23	82	2	69	44	1	0	53	1.11
33618351--33619718	683	2.0	683	89	2	2077	33	16	21	28	1.95
33622276--33622661	192	2.0	192	100	0	772	36	8	9	45	1.69
33625905--33625950	21	2.3	20	78	14	51	30	6	17	45	1.73
33627448--33627490	20	2.2	19	84	12	52	55	11	16	16	1.68
33627448--33627490	19	2.2	19	84	12	52	55	11	16	16	1.68
33628790--33628816	14	1.9	14	100	0	54	7	11	0	81	0.87
33628769--33628811	19	2.2	19	87	4	59	13	9	0	76	1.01
33630032--33630192	83	1.9	83	82	2	198	26	16	19	38	1.92
33631275--33631418	72	2.0	72	95	0	261	39	14	5	40	1.69
33633550--33633783	50	4.6	50	81	4	211	28	21	27	23	1.99
33643248--33643335	33	2.7	33	77	11	92	45	19	9	26	1.80
33643310--33643386	14	5.0	15	72	20	61	41	18	7	32	1.79
33643326--33643365	20	2.0	20	95	0	71	47	15	10	27	1.77
33646553--33646578	11	2.4	11	100	0	52	7	38	38	15	1.76
33657926--33657980	28	2.0	28	88	0	83	29	16	14	40	1.88
33658842--33658881	21	1.9	21	84	0	53	52	22	5	20	1.65
33658870--33659017	68	2.2	68	92	3	248	39	14	14	31	1.87
33659180--33659247	35	1.9	35	100	0	136	38	7	13	41	1.72
33677045--33677207	81	2.0	82	98	1	319	36	8	12	42	1.73
33680727--33680842	25	4.6	25	74	15	105	26	27	20	25	1.99
33680727--33680842	50	2.3	50	82	2	135	26	27	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33686460--33686494	16	2.2	16	94	0	61	25	0	34	40	1.56
33686860--33686912	27	2.1	27	82	10	67	43	0	0	56	0.99
33689781--33689862	25	3.3	25	78	11	96	25	26	20	26	1.99
33689783--33689901	50	2.4	50	84	5	143	26	23	21	28	1.99
33691657--33691718	20	3.2	20	69	17	67	37	16	3	43	1.64
33691647--33691723	38	2.0	38	97	0	145	36	15	3	44	1.65
33695485--33695664	43	4.2	43	73	4	150	35	19	18	26	1.95
33695485--33695797	86	3.7	86	81	5	319	36	18	17	26	1.94
33695523--33695728	43	4.8	42	75	11	159	36	19	18	25	1.94
33695609--33695749	43	3.3	42	74	15	137	36	19	16	27	1.93
33700860--33700929	34	2.1	34	97	0	131	21	0	28	50	1.49
33704083--33704250	42	4.0	42	100	0	336	26	23	23	26	2.00
33704849--33704898	25	2.0	25	100	0	100	40	16	12	32	1.84
33704926--33705155	126	1.8	126	91	0	379	29	19	15	36	1.92
33708520--33708618	35	2.8	35	78	0	117	41	19	25	14	1.88
33708612--33708700	35	2.5	35	81	3	90	31	15	33	19	1.93
33709054--33709110	18	3.2	17	78	7	53	42	19	15	22	1.89
33713042--33713092	23	2.2	23	89	6	77	43	19	9	27	1.82
33719501--33719582	35	2.3	35	79	4	94	32	23	26	17	1.96
33724650--33724691	19	2.1	21	86	8	61	66	0	0	33	0.92
33724638--33724713	19	3.9	19	71	10	57	60	1	0	38	1.05
33724662--33724719	9	6.4	9	79	13	50	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33724663--33724716	19	2.9	19	76	15	60	62	0	0	37	0.95
33726207--33726251	10	4.5	10	83	8	56	40	0	0	60	0.97
33733240--33733308	30	2.3	30	100	0	138	33	23	17	26	1.96
33733413--33733448	18	2.0	18	100	0	72	44	0	0	55	0.99
33736495--33736536	4	10.5	4	100	0	84	23	0	26	50	1.50
33741205--33741256	27	1.9	27	96	0	95	40	5	19	34	1.75
33757953--33758089	50	2.7	51	82	6	163	27	23	26	22	1.99
33759398--33759450	26	2.0	26	96	0	97	26	32	18	22	1.97
33761361--33761399	19	2.1	19	95	0	69	35	10	20	33	1.86
33766510--33766571	28	2.2	27	78	18	65	17	1	37	43	1.59
33772570--33772594	6	4.2	6	100	0	50	80	0	0	20	0.72
33772649--33772697	20	2.5	19	77	9	53	71	4	4	20	1.19
33779336--33779366	3	10.3	3	100	0	62	67	0	32	0	0.91
33783987--33784124	71	1.9	72	85	1	188	31	14	10	43	1.80
33784059--33784639	89	6.7	89	80	8	472	35	12	10	42	1.77
33784059--33784533	178	2.7	175	82	7	556	35	12	10	41	1.78
33784419--33784816	84	4.8	83	79	11	385	34	11	10	43	1.75
33784557--33784795	74	3.1	73	77	16	277	35	10	9	44	1.71
33784635--33784895	82	3.1	81	81	8	233	32	11	10	45	1.74
33787643--33787685	17	2.4	19	88	7	63	58	0	4	37	1.19
33787920--33787979	30	2.0	30	86	3	84	40	0	40	20	1.52
33788202--33788240	18	2.2	18	90	0	60	33	5	10	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33789303--33789342	20	2.0	20	90	0	62	32	7	10	50	1.64
33789340--33789383	23	2.0	23	82	8	56	20	20	6	52	1.69
33794290--33794463	40	4.3	40	85	1	197	20	29	16	33	1.95
33794305--33794467	80	2.0	80	86	0	227	19	28	17	34	1.94
33794390--33794453	20	3.2	19	73	8	65	23	31	15	29	1.95
33794397--33794464	20	3.4	20	77	0	73	23	35	14	26	1.94
33797877--33797949	25	2.9	25	81	0	83	30	20	19	30	1.97
33798660--33798972	156	2.0	157	99	0	619	33	21	13	30	1.92
33798995--33799046	20	2.7	20	72	16	56	28	9	1	59	1.40
33801030--33801062	16	2.1	16	94	0	57	36	6	12	45	1.66
33805046--33805232	40	4.7	40	80	2	198	20	31	15	32	1.94
33805086--33805151	20	3.3	20	66	8	53	16	33	16	33	1.92
33805086--33805238	78	1.9	78	82	3	191	22	30	14	33	1.93
33823844--33823875	16	2.0	16	100	0	64	18	6	12	62	1.50
33823845--33823885	16	2.7	15	88	11	57	19	7	12	60	1.54
33827222--33827276	23	2.4	23	78	6	58	65	5	0	29	1.15
33831060--33831116	27	2.1	27	100	0	114	36	15	17	29	1.91
33844988--33845017	14	2.1	14	93	0	51	26	6	20	46	1.75
33848799--33848863	21	3.2	21	63	20	57	18	16	15	49	1.80
33848791--33848866	39	1.9	39	100	0	152	18	18	14	48	1.81
33848791--33848881	39	2.4	38	92	5	148	18	17	14	49	1.80
33852701--33852754	20	2.7	20	82	2	63	29	25	16	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33852699--33852754	21	2.7	21	80	2	69	28	25	17	28	1.98
33856631--33856702	37	1.9	37	94	0	126	12	15	31	40	1.84
33856643--33856721	37	2.1	37	83	0	95	13	15	29	41	1.85
33857842--33857895	19	2.8	19	83	8	65	25	5	5	62	1.39
33858246--33858342	27	3.6	27	80	12	92	29	24	16	28	1.97
33858298--33858496	26	7.4	27	78	12	126	28	25	17	28	1.97
33858275--33858505	56	4.3	53	79	10	213	27	25	16	30	1.97
33858403--33858505	28	3.7	28	85	7	138	25	28	18	28	1.98
33860991--33861024	17	2.0	17	94	0	59	32	11	2	52	1.53
33860992--33861033	17	2.4	17	88	4	57	33	16	2	47	1.60
33862326--33862539	35	5.9	34	68	16	115	33	15	25	25	1.95
33862279--33862494	114	1.9	113	92	2	362	32	16	25	25	1.96
33863341--33863418	39	2.0	39	94	0	138	51	20	3	24	1.64
33865711--33865746	14	2.6	14	95	0	63	47	5	5	41	1.50
33869067--33869091	12	2.1	12	100	0	50	44	8	0	48	1.32
33871437--33871477	20	2.0	20	95	0	73	73	9	7	9	1.26
33873776--33873816	18	2.3	18	80	12	50	24	0	2	73	0.96
33883028--33883076	23	2.0	26	84	11	68	40	10	8	40	1.69
33883203--33883363	59	2.7	61	80	6	177	50	3	4	41	1.40
33886013--33886087	31	2.4	32	84	2	107	30	12	26	30	1.92
33890618--33890662	23	2.0	23	95	0	81	37	17	13	31	1.89
33897566--33897630	20	3.3	19	73	16	51	38	16	21	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33909889--33909934	19	2.4	19	82	10	58	39	10	23	26	1.88
33910872--33910943	36	2.0	36	100	0	144	22	36	16	25	1.94
33913499--33913549	27	1.9	26	84	11	68	54	13	9	21	1.67
33913904--33913951	21	2.3	20	82	7	51	68	2	4	25	1.18
33916418--33916457	20	2.0	20	85	0	53	40	17	10	32	1.83
33927105--33927175	12	5.9	12	71	12	56	9	15	4	70	1.30
33929446--33929491	18	2.5	19	83	16	53	19	13	2	65	1.37
33930793--33930837	20	2.2	20	84	7	56	53	11	4	31	1.56
33931554--33932045	248	2.0	248	94	0	867	35	18	11	33	1.87
33936057--33936451	203	1.9	203	94	0	700	23	22	21	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128