genome.fa.s12.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  19  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5600968--5601198	114	2.0	115	99	0	455	27	24	20	27	1.99
5611259--5611298	21	1.9	21	85	10	55	52	2	0	45	1.14
5611464--5611503	21	1.9	21	85	10	55	52	2	0	45	1.14
5611202--5611612	205	2.0	206	99	0	815	35	13	6	43	1.71
5624838--5624984	50	2.9	50	82	4	163	27	22	30	19	1.98
5631560--5631708	50	2.9	50	84	8	165	28	19	28	23	1.98
5634256--5634286	16	1.9	16	93	0	53	22	0	9	67	1.19
5645090--5645144	7	7.4	7	79	18	58	1	18	10	69	1.27
5650482--5650521	21	1.9	21	84	0	53	50	0	12	37	1.41
5650388--5650620	121	2.0	117	88	5	351	47	6	13	33	1.68
5650618--5650676	25	2.3	27	82	8	70	47	1	3	47	1.29
5650679--5650722	21	2.2	20	91	4	70	77	4	11	6	1.11
5650699--5650729	15	2.0	16	93	6	55	70	9	12	6	1.31
5657980--5658022	13	3.3	13	75	12	52	39	0	2	58	1.11
5666156--5666205	24	2.0	24	81	11	57	38	2	0	60	1.09
5666161--5666199	17	2.4	16	80	12	53	35	0	0	64	0.94
5666341--5666380	20	1.9	20	85	10	53	30	2	0	67	1.04
5669111--5669183	11	7.3	10	75	13	53	28	1	0	69	0.96
5669100--5669194	29	3.5	28	73	19	103	32	2	0	65	1.05
5669129--5669215	22	4.1	22	73	13	83	33	2	0	64	1.06
5669090--5669199	51	2.2	51	86	3	159	35	2	0	60	1.17
5669129--5669179	11	4.5	11	82	4	66	33	1	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5669163--5669196	17	2.0	17	88	0	50	35	0	0	64	0.94
5669129--5669206	11	7.4	11	75	15	58	34	2	0	62	1.09
5675608--5675666	19	2.9	19	77	22	66	30	1	6	61	1.32
5683136--5683190	21	2.6	21	85	0	74	32	36	7	23	1.82
5691342--5691451	23	4.9	22	74	3	94	15	2	37	44	1.61
5691347--5691451	22	4.7	23	75	3	88	14	2	38	44	1.60
5691347--5691446	45	2.2	45	84	7	123	15	3	37	45	1.61
5694942--5695221	27	10.4	27	84	3	332	43	20	18	17	1.88
5695408--5695497	25	3.6	25	84	1	117	13	18	25	42	1.87
5701890--5701938	20	2.5	20	100	0	98	0	46	0	53	1.00
5703357--5703446	33	2.7	33	85	1	108	20	21	28	30	1.98
5703397--5703464	33	2.1	33	85	0	91	25	19	27	27	1.98
5703430--5703573	28	5.1	28	80	5	166	30	22	25	22	1.99
5703988--5704227	27	8.9	27	84	6	238	20	16	19	43	1.88
5707740--5707799	27	2.2	27	90	0	93	23	20	13	43	1.86
5708094--5708145	17	3.0	17	94	2	86	23	38	25	13	1.91
5714757--5714802	23	2.0	23	100	0	92	39	8	4	47	1.54
5718093--5718207	27	4.3	27	85	2	144	35	17	21	25	1.95
5718093--5718207	54	2.2	53	87	3	160	35	17	21	25	1.95
5718238--5718307	24	3.0	23	79	6	77	20	7	24	48	1.74
5718435--5718506	26	2.8	26	95	0	126	16	19	26	37	1.93
5718508--5718754	32	7.7	32	77	4	194	20	19	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5718575--5718754	96	1.9	96	85	2	254	20	20	22	36	1.96
5718919--5718961	21	2.0	21	90	4	68	2	0	53	44	1.13
5735421--5735505	25	3.4	25	71	18	79	24	21	21	32	1.97
5742986--5743036	25	2.0	25	84	0	66	29	27	19	23	1.98
5743174--5743224	25	2.0	25	85	7	68	50	7	11	29	1.67
5746294--5746339	23	2.0	23	86	0	65	50	19	4	26	1.66
5768007--5768137	54	2.4	54	85	7	169	41	19	22	15	1.89
5767994--5768137	27	5.3	27	81	0	153	40	19	24	15	1.90
5768020--5768151	27	4.9	27	80	1	81	41	20	21	16	1.90
5768321--5768386	26	2.5	26	75	2	69	25	24	13	36	1.92
5768493--5768547	28	2.0	28	85	0	74	25	23	21	29	1.99
5770443--5770611	62	2.7	62	83	4	207	23	29	23	23	1.99
5779715--5779739	1	25.0	1	100	0	50	100	0	0	0	0.00
5781589--5781621	16	2.1	15	94	5	57	48	6	6	39	1.53
5783314--5783504	50	3.7	51	79	7	190	24	29	19	26	1.99
5789147--5789188	20	2.0	20	86	9	57	64	19	0	16	1.30
5791466--5791498	16	2.1	16	100	0	66	33	18	30	18	1.94
5797021--5797053	17	1.9	17	93	0	57	36	18	18	27	1.94
5801307--5801339	14	2.4	14	90	10	50	6	0	48	45	1.27
5822710--5822743	8	4.0	8	85	14	50	58	0	5	35	1.22
5830620--5830852	50	4.6	51	80	2	263	21	32	20	26	1.97
5830620--5830849	101	2.3	101	89	0	361	21	31	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5832271--5832326	26	2.2	26	80	6	60	30	16	10	42	1.82
5835487--5835564	32	2.6	29	79	15	86	38	5	17	38	1.72
5837365--5837406	16	2.6	16	84	0	57	14	26	7	52	1.67
5842739--5842917	28	6.4	28	85	4	222	30	22	22	24	1.99
5843016--5843093	26	3.0	27	73	7	79	37	25	17	19	1.94
5843307--5843555	27	9.3	27	84	4	290	21	16	18	42	1.89
5846077--5846195	50	2.4	50	84	1	150	29	24	16	29	1.97
5846077--5846148	24	2.9	24	82	12	92	26	22	16	34	1.95
5846103--5846170	25	2.8	24	76	14	75	30	25	14	29	1.95
5847371--5847400	12	2.5	12	94	0	51	26	36	26	10	1.88
5847802--5847852	16	3.2	16	88	0	75	35	3	35	25	1.75
5847836--5847930	44	2.1	45	86	5	131	32	5	29	32	1.80
5848086--5848120	18	2.0	17	88	5	52	54	0	0	45	0.99
5853199--5853244	23	2.0	23	86	0	65	45	21	4	28	1.71
5854753--5855123	185	2.0	186	99	0	735	33	21	4	40	1.73
5855987--5856019	16	2.2	16	89	10	52	39	0	9	51	1.34
5860773--5860839	21	3.2	21	68	16	57	22	22	34	20	1.97
5874677--5874773	28	3.5	28	82	0	113	30	11	24	32	1.91
5879418--5879502	42	2.0	42	97	0	161	29	31	11	27	1.92
5879707--5879731	13	1.9	13	100	0	50	32	4	24	40	1.73
5880808--5880973	44	3.9	43	76	11	144	21	17	28	32	1.96
5889662--5889690	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5892816--5892852	11	3.5	11	82	10	51	32	0	2	64	1.07
5893144--5893210	34	1.9	35	87	3	100	34	10	10	44	1.73
5893940--5893979	3	13.3	3	100	0	80	67	0	0	32	0.91
5895681--5895749	35	2.0	35	83	11	88	50	1	10	37	1.45
5895904--5895937	2	17.0	2	87	0	50	44	0	5	50	1.26
5896725--5896816	41	2.2	40	77	11	96	53	4	4	38	1.41
5898141--5898459	43	7.6	43	69	14	189	27	25	21	25	1.99
5898141--5898547	83	4.9	83	70	13	262	28	25	21	25	1.99
5898078--5898561	126	3.8	126	94	0	797	28	23	20	26	1.99
5899755--5899794	7	5.4	8	80	14	50	0	25	0	75	0.81
5910435--5910470	14	2.6	14	86	0	54	72	0	8	19	1.10
5910600--5910644	23	2.0	23	86	8	65	62	13	0	24	1.31
5913676--5913721	21	2.2	21	84	0	56	60	0	10	28	1.30
5914268--5914789	258	2.0	259	99	0	1030	45	11	6	35	1.67
5915126--5915162	19	2.0	20	84	10	51	59	0	2	37	1.12
5918204--5918251	15	3.1	15	88	11	78	37	0	6	56	1.25
5918204--5918249	17	2.8	17	93	6	78	36	0	6	56	1.25
5918485--5918579	45	2.1	45	90	5	149	35	29	4	30	1.77
5918567--5918613	16	2.9	16	87	0	67	27	29	0	42	1.56
5919446--5919502	17	3.4	17	69	13	55	35	5	1	57	1.31
5919448--5919563	33	3.5	33	80	14	123	37	3	2	56	1.30
5920181--5920218	16	2.4	16	91	4	60	86	0	13	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5920847--5920879	3	11.0	3	100	0	66	66	0	0	33	0.92
5924224--5924258	8	4.4	8	85	0	52	82	0	14	2	0.77
5924785--5924836	21	2.5	21	96	3	97	23	0	38	38	1.55
5925067--5925297	44	5.4	44	73	13	180	26	21	22	29	1.99
5925095--5925297	44	4.8	41	74	12	187	26	22	22	29	1.99
5925342--5926907	50	31.5	50	69	3	369	23	21	23	30	1.99
5925643--5926919	100	12.8	100	93	0	2133	23	21	23	31	1.98
5925448--5926919	200	7.4	200	92	1	2283	23	21	23	31	1.98
5925448--5926919	300	4.9	300	92	1	2301	23	21	23	31	1.98
5926931--5927664	86	8.5	86	91	1	1053	23	23	22	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128