genome.fa.s12.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  61  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19435182--19435233	22	2.3	23	80	9	63	61	1	1	34	1.18
19447574--19447602	1	29.0	1	100	0	58	0	0	0	100	0.00
19448366--19448431	31	2.2	31	88	2	98	37	6	12	43	1.67
19450541--19450578	5	7.8	5	85	5	51	81	2	0	15	0.80
19469019--19469091	32	2.5	27	78	19	92	26	2	19	52	1.59
19469032--19469092	32	1.9	32	96	0	113	27	3	18	50	1.62
19470949--19470989	2	20.5	2	94	0	73	48	2	0	48	1.14
19479965--19480055	46	2.0	46	97	0	173	48	5	5	40	1.49
19480723--19480776	20	2.8	20	86	13	85	51	9	9	29	1.65
19481046--19481076	16	1.9	16	93	0	53	41	9	0	48	1.36
19485148--19485180	3	11.0	3	100	0	66	33	0	0	66	0.92
19490186--19490810	318	2.0	318	89	1	959	29	19	27	24	1.99
19491860--19491913	24	2.3	24	81	9	58	37	1	3	57	1.27
19493901--19493969	34	2.0	34	94	0	120	21	21	27	28	1.99
19493917--19493969	17	3.1	17	71	28	58	22	22	24	30	1.99
19507867--19507947	31	2.6	31	90	2	126	35	7	9	46	1.65
19507919--19507967	20	2.5	20	83	3	55	32	8	10	48	1.66
19508173--19508253	31	2.6	31	90	2	126	35	7	9	46	1.65
19508225--19508273	20	2.5	20	86	0	62	34	8	10	46	1.67
19507710--19508322	306	2.0	307	99	0	1210	32	12	13	42	1.80
19519233--19519287	19	2.9	19	76	15	60	40	3	16	40	1.66
19527181--19527209	13	2.1	14	93	6	51	65	17	10	6	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19534475--19534522	18	2.6	19	80	9	55	56	0	2	41	1.11
19537343--19537592	124	2.0	125	98	0	484	30	6	8	54	1.56
19539119--19539167	25	1.9	25	84	12	64	40	2	4	53	1.32
19540843--19540885	22	2.0	22	85	0	59	67	4	0	27	1.10
19541129--19541174	19	2.3	20	85	3	58	69	4	2	23	1.17
19541388--19541415	11	2.5	11	100	0	56	71	14	0	14	1.15
19541738--19541773	18	2.0	18	88	0	54	72	2	8	16	1.21
19544252--19544286	17	2.0	18	88	5	54	40	8	0	51	1.33
19545685--19545753	35	1.9	36	88	2	104	30	14	20	34	1.92
19547540--19547578	16	2.4	17	83	12	55	0	23	0	76	0.78
19557281--19558597	584	2.3	573	83	3	1627	30	21	16	31	1.96
19560104--19560151	21	2.4	20	79	6	53	31	8	0	60	1.26
19569203--19569254	25	2.0	25	85	3	68	61	0	3	34	1.14
19569893--19569942	24	2.1	23	85	3	64	40	0	6	54	1.25
19570796--19570871	40	1.9	39	83	2	98	35	22	26	15	1.94
19582683--19582793	21	5.3	21	80	4	80	36	18	40	3	1.69
19582694--19582793	42	2.4	42	84	0	119	37	19	41	3	1.67
19582736--19582817	21	3.9	21	76	15	80	34	17	45	3	1.66
19583123--19583268	46	3.4	42	77	12	143	19	17	29	32	1.95
19583285--19583445	43	3.7	43	77	7	123	28	24	24	22	1.99
19583342--19583486	43	3.4	43	83	5	159	35	24	20	19	1.95
19583644--19583686	22	2.0	22	95	0	77	41	27	20	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19585933--19585974	20	2.1	20	91	8	68	54	9	2	33	1.46
19586377--19586415	21	1.9	20	84	5	51	51	7	2	38	1.44
19589617--19589670	23	2.3	24	78	15	60	62	0	5	31	1.18
19593068--19593118	22	2.3	22	75	18	52	47	3	0	49	1.20
19597620--19597666	22	2.1	22	88	0	67	29	6	19	44	1.75
19601642--19601932	153	1.9	150	81	6	340	29	8	14	47	1.74
19608790--19608817	7	4.0	7	100	0	56	42	28	14	14	1.84
19613752--19613789	14	2.6	15	87	8	60	63	2	34	0	1.09
19615533--19615567	3	11.7	3	93	0	61	62	34	0	2	1.10
19616679--19616739	28	2.2	28	91	2	97	31	22	22	22	1.99
19617057--19617135	27	3.0	26	80	9	70	25	18	18	36	1.94
19617088--19617150	27	2.3	27	86	0	90	20	17	19	42	1.89
19624023--19624076	26	2.1	26	85	0	72	37	24	20	18	1.94
19624256--19624399	27	5.4	27	90	0	209	19	16	22	40	1.90
19624970--19625031	23	2.7	23	85	2	81	50	1	1	46	1.20
19625007--19625046	16	2.5	16	91	0	62	47	2	7	42	1.45
19625119--19625146	9	3.1	9	100	0	56	32	0	10	57	1.33
19625035--19625244	68	3.1	68	95	1	370	40	5	9	45	1.58
19625187--19625214	9	3.1	9	100	0	56	32	0	10	57	1.33
19625306--19625351	23	2.0	23	91	8	76	63	0	0	36	0.95
19634805--19634868	33	1.9	33	84	6	85	28	25	23	23	2.00
19634833--19634890	28	2.1	27	90	3	89	31	24	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19639687--19639779	45	2.1	45	100	0	186	36	15	24	23	1.93
19651472--19651660	40	4.8	40	88	0	272	35	20	26	17	1.95
19652859--19652935	38	2.0	38	92	0	127	40	20	16	22	1.91
19653997--19654123	43	3.0	43	90	0	182	31	18	22	26	1.97
19657897--19658076	43	4.2	43	81	5	211	35	24	20	20	1.96
19657913--19658073	86	1.9	86	88	0	241	34	22	21	21	1.97
19662346--19662392	20	2.3	20	92	0	76	23	19	23	34	1.97
19671524--19671602	25	3.2	25	94	0	131	29	26	20	24	1.99
19672976--19673014	13	3.0	13	88	0	60	46	15	12	25	1.81
19674154--19674193	18	2.2	19	86	4	55	37	5	0	57	1.21
19681282--19681618	54	6.3	54	77	5	317	35	21	21	21	1.96
19681282--19681618	27	12.5	28	77	8	283	35	21	21	21	1.96
19681602--19681654	26	2.0	27	88	3	81	24	16	22	35	1.95
19681644--19681701	24	2.4	24	94	0	98	22	6	22	48	1.74
19681649--19681691	11	3.7	11	76	11	50	18	6	23	51	1.70
19681846--19682046	32	6.3	32	84	1	217	20	18	20	39	1.93
19681846--19681998	63	2.4	64	86	3	202	20	18	20	39	1.92
19681848--19682021	95	1.8	95	87	0	258	19	19	21	39	1.93
19681846--19682047	63	3.2	63	82	3	201	20	18	21	39	1.93
19682039--19682103	22	3.0	22	66	8	60	18	18	23	40	1.92
19685408--19685515	29	3.8	28	81	6	117	21	16	23	38	1.92
19701450--19701657	104	2.0	104	98	0	398	25	25	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19709772--19709828	23	2.5	23	88	0	78	35	17	12	35	1.87
19711120--19711275	53	2.9	53	92	0	258	23	23	8	44	1.80
19714383--19714435	25	2.1	25	96	0	97	26	3	16	52	1.61
19720597--19720639	17	2.5	18	77	11	54	39	4	0	55	1.20
19727279--19727488	60	3.5	60	77	5	165	34	12	23	28	1.92
19734180--19734216	18	2.1	18	100	0	74	43	27	16	13	1.85
19737146--19737176	16	1.9	16	100	0	62	12	19	22	45	1.84
19737798--19737869	31	2.3	31	87	0	99	40	19	22	18	1.92
19744702--19744826	54	2.3	54	81	2	144	19	33	22	24	1.97
19747194--19747371	90	2.0	90	96	0	329	38	14	12	34	1.84
19768978--19769017	9	4.2	9	81	12	53	65	0	0	35	0.93
19775823--19775847	12	2.1	12	100	0	50	28	8	32	32	1.86
19776162--19778015	617	3.0	617	98	0	3546	29	12	24	34	1.92
19783760--19783799	21	1.9	21	94	0	71	30	22	17	30	1.97
19784551--19784873	163	2.0	164	98	0	630	33	20	16	30	1.94
19795895--19796022	27	4.7	27	85	3	141	28	21	16	33	1.95
19795866--19795983	54	2.2	54	80	3	121	32	22	17	27	1.96
19795921--19796021	27	3.7	28	89	4	143	26	20	15	36	1.93
19800594--19800727	26	5.0	26	73	10	108	34	24	17	23	1.96
19807503--19807549	22	2.0	24	88	8	71	48	4	29	17	1.65
19829407--19829454	21	2.3	21	85	3	62	27	0	2	70	0.98
19829461--19829490	8	3.8	8	100	0	60	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19829453--19829492	16	2.5	15	84	4	53	40	0	2	57	1.12
19829986--19830857	114	7.7	113	81	4	895	35	19	20	24	1.95
19830023--19830858	227	3.7	227	82	6	926	35	18	19	25	1.95
19830023--19830858	341	2.4	340	84	4	1060	35	18	19	25	1.95
19831250--19831287	14	2.7	14	76	15	51	23	2	18	55	1.55
19831339--19831403	21	3.1	20	68	25	53	21	1	38	38	1.63
19831948--19832022	37	2.0	38	97	2	143	52	0	10	37	1.37
19832354--19832732	191	2.0	191	93	1	643	17	25	12	43	1.85
19834041--19834088	25	1.9	25	86	0	69	47	18	0	33	1.49
19834058--19834149	16	5.4	16	78	11	69	47	18	1	32	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128