genome.fa.s12.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  93  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30655334--30655377	17	2.4	18	81	11	54	81	4	13	0	0.83
30663111--30663137	11	2.5	11	100	0	54	74	0	0	25	0.83
30665014--30665047	4	8.0	4	90	9	50	50	0	0	50	1.00
30669466--30669510	24	1.9	24	86	4	65	42	8	17	31	1.80
30673272--30673463	50	3.8	50	85	0	231	21	28	21	28	1.99
30677677--30677733	28	2.0	28	93	0	96	36	21	14	28	1.92
30679141--30679381	50	4.8	50	84	4	292	20	28	21	28	1.98
30680151--30680263	35	3.2	35	79	0	109	23	23	20	31	1.98
30682561--30682618	26	2.2	26	87	6	82	55	6	10	27	1.59
30696566--30696705	51	2.8	50	83	5	174	30	29	18	21	1.97
30700367--30700483	62	1.9	59	86	5	162	50	2	3	43	1.32
30700466--30700524	20	2.9	21	79	5	66	47	3	1	47	1.29
30700493--30700524	10	3.0	11	90	9	57	43	0	0	56	0.99
30700466--30700535	21	3.4	20	74	7	61	50	4	1	44	1.30
30700955--30700979	11	2.3	11	100	0	50	36	0	0	64	0.94
30703054--30703116	23	2.7	24	83	9	69	63	6	4	25	1.38
30703716--30703773	22	2.7	21	84	7	80	32	3	18	44	1.67
30703726--30703770	23	2.0	22	91	4	72	31	4	17	46	1.68
30733304--30733374	37	1.9	37	83	11	92	38	4	4	53	1.40
30733445--30733494	24	2.1	23	85	10	66	48	2	0	50	1.12
30733818--30733870	16	3.3	16	80	17	65	39	5	30	24	1.78
30734354--30734405	20	2.8	18	78	21	54	40	3	3	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30734414--30734463	25	2.0	25	84	0	64	50	2	4	44	1.32
30734789--30734841	16	3.3	16	80	17	65	39	5	30	24	1.78
30734823--30734915	44	2.1	44	86	9	127	32	4	27	35	1.77
30744028--30744081	19	2.8	19	83	5	65	53	3	5	37	1.42
30744059--30744165	55	1.9	56	83	7	137	59	3	5	30	1.38
30745696--30745725	12	2.5	12	94	0	51	56	0	10	33	1.32
30745742--30745796	15	3.3	16	80	12	58	78	5	1	14	1.02
30746988--30747067	17	5.0	16	66	22	51	37	1	1	60	1.13
30746959--30747076	47	2.5	47	84	12	136	35	1	1	61	1.16
30747019--30747068	19	2.7	17	77	17	55	34	2	0	64	1.05
30748141--30748212	19	3.5	19	74	20	72	23	29	0	47	1.52
30754474--30754502	10	2.7	11	94	5	51	86	0	3	10	0.69
30760317--30760359	13	3.3	13	80	0	50	34	0	2	62	1.08
30761642--30761707	13	5.0	12	72	18	51	46	1	9	42	1.44
30761642--30761721	41	2.0	41	100	0	160	48	2	7	41	1.45
30762842--30762874	11	3.1	11	86	4	50	90	0	9	0	0.44
30764517--30764557	20	2.0	20	100	0	82	29	21	14	34	1.93
30766874--30766925	20	2.6	20	93	0	95	21	26	0	51	1.47
30780730--30781155	212	2.0	213	99	0	845	28	22	11	37	1.89
30781673--30782434	27	22.5	33	69	24	252	33	27	19	19	1.96
30781700--30782439	102	7.3	102	97	0	1329	32	27	19	19	1.96
30781802--30782411	33	17.7	35	67	27	200	33	27	18	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30787916--30788055	27	4.6	31	72	20	111	32	25	23	17	1.97
30787947--30788057	27	3.9	27	83	13	150	30	27	24	17	1.97
30787916--30788055	60	2.3	60	93	0	235	32	25	23	17	1.97
30793813--30794093	93	3.0	91	89	3	420	44	4	12	38	1.63
30794241--30794281	21	2.0	21	100	0	82	29	21	14	34	1.93
30798156--30799435	645	2.0	646	91	1	2055	36	13	18	31	1.89
30819695--30819756	30	2.1	30	87	6	90	48	11	8	32	1.68
30828484--30828520	18	2.0	19	89	5	58	51	0	43	5	1.24
30834707--30834811	4	26.2	4	76	14	85	72	2	4	20	1.16
30834924--30834982	15	4.2	14	77	12	59	69	1	5	23	1.18
30836563--30836664	51	2.0	51	82	0	123	27	19	18	34	1.95
30836755--30838423	51	33.8	51	76	9	1257	29	23	16	29	1.97
30836484--30836848	194	1.9	194	84	2	500	29	20	19	30	1.97
30836523--30837416	447	2.0	447	87	0	1297	28	22	18	30	1.97
30837226--30838393	97	11.9	97	76	10	835	29	24	16	29	1.96
30837209--30838423	290	4.1	288	79	8	1083	30	24	16	29	1.96
30837222--30838393	148	8.0	149	75	9	528	29	24	16	29	1.96
30838754--30838830	24	3.2	24	92	0	127	32	24	9	33	1.87
30839687--30839862	46	3.7	46	77	7	158	14	24	19	41	1.89
30840288--30840379	15	6.1	14	75	13	78	1	3	15	80	0.90
30840299--30840376	7	10.7	7	85	10	95	1	2	14	82	0.85
30840318--30840362	9	5.3	9	84	15	51	0	4	15	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30840289--30840380	23	4.0	23	82	10	100	1	4	14	80	0.92
30845748--30845827	12	6.4	12	75	15	56	63	5	2	28	1.28
30851640--30851699	31	1.9	32	90	6	97	10	25	3	61	1.43
30853071--30853132	28	2.2	28	94	2	108	38	22	24	14	1.91
30853293--30853357	27	2.4	27	92	2	105	33	24	23	18	1.96
30853596--30853685	27	3.3	27	84	0	108	30	13	23	33	1.93
30853663--30853762	27	3.7	27	74	10	89	32	10	22	36	1.87
30853636--30853762	54	2.4	54	75	10	125	30	11	22	35	1.89
30858931--30859000	25	2.8	26	84	6	99	24	22	24	28	1.99
30868533--30868770	85	2.8	85	90	1	372	34	27	16	21	1.95
30868541--30868767	42	5.4	42	82	9	266	35	27	15	21	1.94
30873461--30873527	26	2.6	26	85	4	91	31	28	25	14	1.95
30873699--30873883	27	6.9	26	76	12	162	16	17	21	43	1.87
30873687--30873883	80	2.5	81	84	6	233	17	16	22	42	1.89
30873699--30873882	53	3.5	53	81	3	226	16	17	21	44	1.87
30874085--30874520	27	16.2	26	77	12	350	16	17	20	45	1.86
30874085--30874520	54	8.1	53	79	8	393	16	17	20	45	1.86
30873498--30874269	386	2.0	386	98	1	1512	26	20	17	35	1.95
30874073--30874520	81	5.6	80	80	9	400	17	16	20	44	1.86
30881413--30881471	28	2.1	28	90	0	91	28	25	22	23	1.99
30881527--30881587	26	2.3	26	88	5	88	26	26	29	18	1.98
30881749--30881806	27	2.2	26	81	3	62	20	15	25	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30881756--30882060	27	11.3	26	77	12	244	18	17	20	44	1.87
30881756--30882060	54	5.7	54	80	10	295	18	17	20	44	1.87
30881757--30882060	81	3.8	79	82	7	362	18	16	20	44	1.87
30886332--30886396	28	2.3	27	82	7	76	33	23	24	18	1.96
30886560--30886616	22	2.5	22	80	2	60	43	19	21	15	1.87
30886631--30886897	32	8.4	31	78	4	200	36	23	20	19	1.95
30886631--30886897	96	2.8	95	81	5	297	36	23	20	19	1.95
30887190--30887479	81	3.6	80	87	5	397	25	21	18	35	1.95
30887175--30887488	27	11.7	27	82	4	341	25	21	18	34	1.96
30904721--30904912	40	4.8	40	81	3	210	32	27	23	17	1.96
30911208--30911237	12	2.5	12	94	0	51	26	40	23	10	1.86
30913718--30913746	9	3.2	9	100	0	58	44	0	34	20	1.52
30921819--30922119	40	7.6	40	86	0	399	36	29	18	15	1.92
30933868--30933954	43	2.0	43	88	0	129	26	19	1	52	1.53
30934420--30934444	8	3.1	8	100	0	50	36	40	12	12	1.79
30935128--30935162	12	3.0	12	87	4	54	28	8	0	62	1.24
30936890--30937009	59	2.0	60	98	1	233	41	26	5	26	1.76
30941870--30941917	23	2.1	23	92	0	78	25	4	16	54	1.60
30942967--30943006	15	2.8	15	82	17	50	35	0	0	65	0.93
30956173--30956305	50	2.6	51	82	5	171	32	27	15	24	1.96
30956173--30956360	51	3.7	50	81	3	198	30	26	16	26	1.97
30959652--30959698	22	2.1	22	92	0	76	27	29	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30961001--30961068	27	2.5	27	80	0	73	29	26	14	29	1.95
30961027--30961069	18	2.4	18	88	7	61	27	32	13	25	1.94
30962360--30962399	12	3.6	12	77	19	50	67	0	5	27	1.11
30962360--30962402	11	3.9	11	81	9	52	69	0	4	25	1.07
30964067--30964149	41	2.0	41	83	0	103	31	12	13	43	1.80
30970010--30970550	140	3.9	136	86	5	710	46	5	8	39	1.58
30970528--30970676	76	1.9	77	91	1	246	29	15	8	46	1.76
30977386--30977652	51	5.3	49	75	10	182	26	15	27	30	1.96
30977420--30977670	101	2.5	102	83	5	321	27	16	25	30	1.97
30983384--30983941	139	4.0	138	89	1	762	43	5	9	40	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128