genome.fa.s12.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  34  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10490582--10490637	25	2.2	25	83	0	67	21	30	17	30	1.96
10493966--10494056	41	2.2	41	86	0	128	27	17	25	29	1.97
10493966--10494085	41	2.9	41	81	7	120	27	18	24	30	1.98
10503914--10504038	20	6.2	20	67	10	67	12	24	19	44	1.84
10510562--10510740	51	3.2	58	84	11	257	29	24	13	33	1.93
10512442--10512474	16	2.1	16	94	0	57	36	6	33	24	1.80
10512454--10512543	45	2.0	44	87	6	128	32	5	27	34	1.80
10512688--10512729	15	2.7	16	82	14	52	52	2	0	45	1.13
10512697--10512738	15	2.9	15	82	10	52	52	0	0	47	1.00
10525923--10525967	21	2.1	21	88	8	65	40	0	0	60	0.97
10525920--10525967	22	2.1	24	88	7	73	37	0	0	62	0.95
10527231--10527297	11	6.4	11	75	20	72	56	0	2	40	1.14
10527217--10527286	30	2.3	30	90	9	108	55	0	2	41	1.14
10527223--10527315	40	2.3	40	90	1	161	61	0	2	36	1.08
10527282--10527327	17	2.7	17	82	0	56	63	0	0	36	0.95
10528524--10528557	16	2.1	16	88	0	50	61	0	0	38	0.96
10532716--10532809	49	1.9	49	91	0	152	43	1	19	36	1.58
10533151--10533289	50	2.8	50	94	0	233	24	19	32	23	1.98
10533218--10533362	77	1.9	77	94	0	254	23	21	33	22	1.98
10533295--10533414	50	2.4	51	85	1	152	25	23	30	20	1.99
10539367--10539398	10	3.3	10	95	4	57	18	6	0	75	1.01
10539364--10539431	9	7.9	8	77	20	59	26	2	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10539364--10539432	17	4.1	16	78	16	68	27	2	0	69	1.02
10539378--10539432	17	3.3	17	82	14	78	27	1	0	70	0.97
10540411--10540448	19	2.0	19	94	0	67	44	13	5	36	1.66
10543824--10543848	13	1.9	13	100	0	50	36	0	16	48	1.46
10547081--10547106	2	13.0	2	100	0	52	50	50	0	0	1.00
10551063--10551092	2	15.0	2	92	0	51	46	0	3	50	1.18
10554903--10554938	18	2.0	18	94	0	63	44	13	16	25	1.85
10555297--10555516	111	2.0	109	94	1	386	30	15	14	40	1.87
10570124--10570164	4	10.2	4	80	19	50	0	24	0	75	0.80
10575316--10575438	8	15.5	8	67	16	51	70	0	4	24	1.06
10575326--10575431	22	5.0	20	73	18	90	70	0	4	24	1.06
10575318--10575430	31	3.6	30	77	12	129	70	0	4	24	1.05
10575326--10575431	23	5.0	22	74	18	100	70	0	4	24	1.06
10575310--10575436	63	2.0	64	98	1	247	68	0	4	26	1.09
10575342--10575438	40	2.5	39	80	12	110	71	0	4	24	1.04
10575545--10575593	26	1.9	26	87	4	73	57	0	2	40	1.10
10576874--10576939	17	3.7	17	74	20	55	30	1	0	68	0.99
10577039--10577084	22	2.1	21	84	11	58	23	4	2	69	1.17
10583161--10583295	45	3.0	45	100	0	270	35	13	11	40	1.80
10587164--10587197	13	2.6	13	100	0	68	17	32	29	20	1.96
10588117--10588308	36	5.3	36	88	4	228	38	30	13	17	1.88
10596752--10597547	398	2.0	398	99	0	1576	36	15	11	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10597727--10597790	26	2.5	26	79	5	67	34	20	6	39	1.78
10605191--10605234	12	3.6	12	78	6	52	36	4	18	40	1.71
10605184--10605238	25	2.2	25	96	0	101	34	7	14	43	1.73
10605184--10605222	13	3.1	13	77	7	53	38	5	15	41	1.69
10613054--10613088	18	1.9	18	88	0	52	22	8	25	42	1.82
10613708--10613749	20	2.1	20	86	0	57	47	0	7	45	1.30
10623119--10623212	48	2.0	48	95	0	170	37	9	20	32	1.85
10626051--10626137	39	2.3	38	86	5	115	32	14	14	37	1.88
10628880--10629744	432	2.0	432	96	0	1597	31	23	12	31	1.92
10630988--10631074	39	2.3	38	86	5	115	32	14	14	37	1.88
10631083--10631159	32	2.4	32	80	4	93	24	22	6	46	1.75
10632885--10632942	26	2.2	26	90	0	89	34	6	8	50	1.60
10644750--10644803	7	7.7	7	95	0	99	70	0	29	0	0.88
10644934--10644976	23	1.9	22	95	4	77	72	0	25	2	0.97
10645794--10645860	28	2.4	28	82	2	91	25	16	23	34	1.95
10646277--10646316	20	2.0	21	85	14	57	60	0	5	35	1.19
10646789--10646826	16	2.4	16	90	0	58	44	0	2	52	1.14
10650114--10650151	15	2.6	15	84	15	53	50	15	0	34	1.45
10664669--10664744	30	2.4	32	82	6	93	61	2	3	31	1.28
10664721--10664755	17	2.0	18	88	5	54	68	0	2	28	1.04
10664875--10664918	18	2.4	18	80	0	52	59	2	2	36	1.23
10671616--10671667	21	2.5	21	81	9	54	15	11	1	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10676854--10677037	43	4.3	42	84	6	210	30	20	23	24	1.98
10676854--10677038	86	2.2	85	85	4	239	30	20	23	24	1.98
10682337--10682427	18	4.9	18	82	13	114	42	0	12	45	1.41
10682337--10682427	39	2.5	35	86	12	128	42	0	12	45	1.41
10684694--10684771	7	10.4	7	72	13	57	32	46	1	20	1.59
10684984--10685424	114	3.9	114	91	0	695	26	27	21	24	1.99
10686204--10686354	68	2.2	68	89	0	239	31	13	19	35	1.91
10686272--10686655	103	3.7	105	85	4	526	33	15	17	33	1.91
10687409--10687487	26	3.0	27	81	9	99	43	15	0	41	1.46
10688155--10688180	7	3.7	7	100	0	52	61	0	0	38	0.96
10694184--10694241	25	2.3	25	82	11	66	22	10	5	62	1.47
10694929--10694990	30	2.1	30	87	3	90	77	6	8	8	1.13
10694926--10695016	37	2.5	36	82	8	112	75	5	8	9	1.17
10694994--10695050	13	4.8	12	79	16	57	78	0	12	8	0.95
10695007--10695056	13	3.7	13	86	5	55	80	0	14	6	0.90
10695013--10695059	13	3.7	13	91	2	69	76	0	17	6	0.98
10695906--10695947	8	5.6	8	83	11	54	76	0	14	9	1.02
10695907--10695956	7	7.0	7	82	17	59	72	0	16	12	1.13
10695907--10695956	21	2.3	22	93	3	84	72	0	16	12	1.13
10695910--10695947	13	2.6	15	84	16	53	73	0	15	10	1.09
10697168--10697494	44	7.5	44	72	10	168	27	20	26	24	1.99
10697157--10698672	218	7.0	218	92	0	2480	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10697604--10697712	44	2.5	44	80	10	123	25	20	29	24	1.99
10701803--10701868	25	2.6	25	80	17	91	22	15	9	53	1.70
10702667--10702714	21	2.3	22	82	13	66	18	56	18	6	1.62
10708215--10708261	21	2.2	21	88	3	67	78	6	4	10	1.06
10708263--10708378	53	2.3	48	80	16	112	71	3	14	10	1.26
10710345--10710373	5	6.0	5	92	8	51	82	0	0	17	0.66
10710563--10711046	100	4.9	99	87	3	659	34	21	19	24	1.97
10710579--10711063	50	9.8	50	67	11	230	34	21	19	24	1.96
10711038--10711087	25	2.0	25	84	0	64	36	20	18	26	1.95
10710938--10711175	125	1.9	125	85	1	334	34	21	18	25	1.96
10711289--10712196	44	21.0	43	68	13	276	31	20	21	26	1.98
10711298--10711718	218	1.9	218	85	3	589	29	20	23	26	1.99
10711521--10712274	129	5.8	129	87	0	1037	31	20	20	26	1.97
10713613--10714613	109	9.2	109	98	0	1903	33	18	17	30	1.94
10716348--10716395	19	2.6	18	80	12	53	62	0	2	35	1.07
10722576--10722639	23	2.8	23	95	0	110	39	15	14	31	1.87
10722956--10723135	57	3.2	57	88	0	281	20	17	15	46	1.84
10730191--10730313	56	2.2	57	85	4	169	49	14	16	19	1.79
10730698--10730891	23	8.4	23	83	1	246	41	15	12	30	1.84
10731600--10731731	41	3.2	41	77	7	135	33	22	16	27	1.96
10731621--10731731	40	2.7	40	79	6	109	34	22	16	27	1.95
10731658--10731756	40	2.5	39	80	6	101	36	22	14	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10734088--10734208	64	1.9	64	87	0	179	34	22	20	22	1.97
10734588--10734620	11	3.1	11	86	8	50	33	36	0	30	1.58
10738674--10738777	33	3.1	33	65	13	95	33	16	13	36	1.88
10738646--10738777	67	2.0	67	96	0	246	32	15	15	37	1.88
10739186--10739223	20	1.9	20	94	0	67	68	2	2	26	1.16
10740943--10741051	45	2.4	45	80	1	121	30	20	18	31	1.96
10740972--10741066	45	2.1	45	88	3	138	29	22	14	33	1.94
10740985--10741098	45	2.5	45	82	4	131	31	17	18	32	1.94
10741157--10741368	44	4.7	44	77	10	185	27	23	18	31	1.97
10741261--10741393	45	3.0	44	80	4	115	27	23	19	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128