genome.fa.s12.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  36  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11134358--11134388	15	2.1	15	93	0	53	32	12	9	45	1.75
11141369--11141409	21	2.0	21	85	9	57	36	2	17	43	1.62
11141448--11141576	52	2.6	49	80	9	154	36	2	16	44	1.60
11144271--11144303	6	5.5	6	92	0	57	21	0	0	78	0.75
11144271--11144307	18	2.1	18	100	0	74	21	0	0	78	0.75
11144277--11144318	18	2.3	18	87	0	57	26	0	2	71	0.98
11146191--11146215	2	12.5	2	100	0	50	48	0	0	52	1.00
11154534--11154591	24	2.4	24	82	0	71	60	22	5	12	1.51
11154549--11154599	24	2.1	24	88	0	75	60	19	5	13	1.53
11157175--11157235	25	2.5	23	78	10	59	31	1	1	65	1.12
11164140--11164165	2	13.0	2	100	0	52	50	0	0	50	1.00
11167500--11167623	34	3.6	34	86	0	158	33	9	14	42	1.78
11170124--11170172	3	16.3	3	91	8	82	65	0	2	32	1.04
11171533--11171568	18	1.9	19	88	5	56	22	5	11	61	1.50
11171908--11171952	22	2.0	22	95	0	81	31	15	24	28	1.96
11171916--11171957	22	1.9	22	85	0	57	35	16	23	23	1.95
11175225--11175251	14	1.9	14	100	0	54	22	11	14	51	1.73
11177038--11177075	19	2.0	19	85	10	51	50	7	7	34	1.61
11182096--11182237	70	2.0	70	97	2	268	47	2	5	43	1.41
11182647--11182722	17	4.6	17	71	15	70	38	2	2	56	1.27
11182630--11182705	37	2.1	36	83	11	93	39	2	2	55	1.28
11182630--11182727	48	2.0	48	88	0	142	37	3	3	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11188851--11188911	27	2.2	28	85	8	81	26	18	4	50	1.66
11196929--11196975	11	4.5	10	79	15	51	55	4	0	40	1.19
11198579--11198617	20	2.1	19	85	9	53	25	2	5	66	1.25
11202221--11202267	14	3.1	15	84	9	51	42	2	2	53	1.25
11202238--11202288	23	2.2	23	82	0	57	41	7	1	49	1.43
11211260--11211297	18	2.2	17	86	13	51	42	15	23	18	1.89
11211260--11211297	17	2.2	18	86	13	53	42	15	23	18	1.89
11216849--11217029	97	1.9	97	81	4	222	26	16	9	46	1.78
11217476--11218190	44	16.5	44	67	12	350	31	21	21	25	1.98
11217608--11218220	85	7.1	84	67	13	269	31	22	21	25	1.98
11217448--11218220	129	5.9	129	89	3	1104	31	22	20	25	1.98
11217448--11218223	261	3.0	259	86	5	1077	31	22	21	25	1.98
11217471--11218220	390	1.9	390	88	3	1118	31	22	20	25	1.98
11218605--11218771	55	3.0	55	99	0	325	42	4	5	47	1.45
11218760--11218799	14	3.0	13	89	7	62	50	2	0	47	1.14
11220057--11220228	79	2.2	80	97	2	337	33	9	10	47	1.70
11220201--11220240	20	2.0	20	85	9	55	57	0	2	40	1.12
11220242--11220280	17	2.3	17	90	0	60	46	2	2	48	1.29
11222638--11222699	6	10.7	6	89	6	101	33	1	16	48	1.56
11232090--11232128	11	3.7	11	83	13	55	71	17	0	10	1.12
11232144--11232234	17	5.2	19	69	29	69	29	1	13	56	1.45
11232337--11232426	37	2.5	35	78	16	94	35	4	7	52	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11237588--11238316	160	4.6	159	90	3	1136	29	10	7	52	1.63
11238302--11238368	16	4.2	15	83	9	80	22	7	1	68	1.23
11238302--11238368	17	4.1	16	77	14	75	22	7	1	68	1.23
11238586--11238615	12	2.6	11	90	10	51	0	20	0	80	0.72
11238596--11238698	43	2.4	41	79	10	102	0	38	1	58	1.16
11239981--11240111	69	1.9	69	84	3	174	36	18	23	21	1.95
11242485--11242543	26	2.3	26	78	16	70	42	3	16	37	1.66
11244457--11244589	41	3.3	39	87	11	198	33	3	0	62	1.16
11244472--11244580	11	10.4	11	68	22	56	36	3	0	58	1.22
11246408--11246660	106	2.3	108	85	3	330	26	19	15	39	1.91
11253397--11253433	13	2.7	14	83	8	58	70	2	0	27	1.01
11264942--11265025	42	2.0	43	90	2	134	25	33	20	21	1.97
11265425--11265478	21	2.6	21	87	0	72	7	44	14	33	1.73
11265527--11265566	21	1.9	21	89	0	62	5	45	15	35	1.68
11265438--11265643	87	2.4	87	85	4	256	12	31	17	39	1.86
11265532--11265574	21	2.0	21	86	0	59	4	41	18	34	1.71
11267487--11267522	15	2.5	15	90	4	56	63	8	16	11	1.49
11271319--11271567	74	3.4	74	94	0	419	33	18	18	28	1.95
11272635--11272728	41	2.3	41	79	3	109	22	23	23	30	1.99
11272699--11272892	41	4.7	41	83	7	234	31	22	25	20	1.98
11272996--11273086	41	2.2	40	81	11	96	15	25	23	36	1.94
11275331--11275420	18	5.1	17	72	13	76	36	3	1	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11275331--11275420	36	2.6	32	77	17	90	36	3	1	58	1.22
11275331--11275432	18	5.9	17	69	18	59	39	2	1	55	1.26
11276214--11276279	31	2.2	29	86	5	87	25	6	13	54	1.62
11278495--11278522	6	4.7	6	100	0	56	85	14	0	0	0.59
11285113--11285224	34	3.3	34	81	7	147	28	16	16	39	1.89
11285299--11285403	45	2.3	45	85	3	140	26	17	14	41	1.87
11285421--11285446	12	2.2	12	100	0	52	7	15	30	46	1.74
11285605--11285735	41	3.2	41	92	0	217	19	19	30	29	1.97
11285967--11286082	50	2.3	49	80	4	124	18	0	35	44	1.56
11286044--11286085	20	2.0	20	95	4	75	14	0	35	50	1.43
11285909--11286085	14	12.4	14	69	14	76	19	1	33	44	1.61
11285986--11286085	7	14.1	7	70	14	62	18	0	38	44	1.50
11286260--11286297	14	2.7	15	84	12	53	28	0	28	42	1.56
11286284--11286362	21	3.7	21	77	11	72	25	1	37	35	1.64
11292937--11293037	42	2.4	43	88	5	143	23	22	27	25	2.00
11292983--11293086	55	1.9	54	92	2	172	22	25	28	23	1.99
11293174--11293792	43	14.3	43	74	8	450	25	20	28	25	1.99
11293174--11293441	128	2.1	129	84	7	341	23	20	31	25	1.98
11293037--11293816	351	2.2	351	92	0	1301	26	20	27	25	1.99
11293531--11293792	128	2.0	129	83	3	323	26	20	28	24	1.99
11298267--11298303	18	2.1	18	94	0	65	48	27	2	21	1.63
11330504--11330546	8	5.1	8	94	5	68	41	11	23	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11330504--11330546	16	2.6	17	92	7	79	41	11	23	23	1.87
11336869--11336918	26	1.9	26	95	0	91	16	20	34	30	1.94
11336828--11336959	67	2.0	68	86	4	187	23	18	28	28	1.98
11336898--11337048	42	3.6	43	77	7	139	21	17	25	35	1.95
11342821--11342869	20	2.5	20	83	12	66	22	26	0	51	1.49
11344470--11344697	42	5.4	42	73	7	167	21	22	19	36	1.95
11346162--11346209	21	2.3	20	82	6	60	66	2	2	29	1.14
11352069--11352175	44	2.4	44	90	3	171	31	23	14	29	1.95
11355359--11355407	24	1.9	27	84	12	68	22	22	8	46	1.77
11359714--11359901	92	2.1	91	84	3	243	19	21	34	24	1.97
11366521--11366569	25	2.0	24	92	4	80	22	28	20	28	1.98
11374430--11374526	44	2.2	45	88	1	142	36	28	4	30	1.76
11374506--11374558	16	3.3	16	94	0	97	22	33	5	37	1.78
11377091--11377153	18	3.3	18	74	14	56	26	1	3	68	1.14
11378416--11378458	16	2.6	16	85	3	50	34	0	0	65	0.93
11378777--11378836	31	1.9	32	86	3	86	55	5	3	36	1.38
11380114--11380161	18	2.8	17	78	6	60	72	2	20	4	1.11
11383584--11383736	40	3.8	40	88	0	216	30	24	15	29	1.95
11383577--11383748	80	2.2	80	82	0	218	31	22	13	31	1.93
11393624--11393658	15	2.2	16	90	5	54	71	2	0	25	1.00
11394213--11394268	20	2.7	22	81	8	55	35	3	1	58	1.26
11401557--11401595	12	3.2	12	88	3	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11407799--11407858	25	2.3	25	83	16	70	41	5	1	51	1.33
11420639--11420726	44	2.0	44	88	4	133	23	34	13	28	1.93
11424659--11424685	14	1.9	14	100	0	54	18	0	7	74	1.05
11424848--11425029	100	1.8	100	90	0	292	36	7	10	45	1.67
11426625--11426665	17	2.3	19	80	16	52	63	12	0	24	1.28
11426624--11426663	18	2.2	18	86	8	55	65	12	0	22	1.26
11429125--11429244	19	6.0	19	85	10	150	34	9	18	38	1.82
11429125--11429244	40	3.0	38	83	9	150	34	9	18	38	1.82
11431293--11431431	44	3.1	45	69	4	120	27	23	26	23	2.00
11431229--11431526	88	3.4	88	87	0	398	27	24	24	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128