genome.fa.s12.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  108  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36133556--36133683	57	2.2	57	83	2	150	26	19	7	46	1.75
36142223--36142264	13	3.5	13	75	18	54	50	11	0	38	1.40
36142223--36142273	23	2.2	23	96	0	93	50	11	0	37	1.39
36142460--36142526	35	1.9	35	90	6	109	49	7	5	37	1.56
36145399--36145531	50	2.6	51	81	2	160	35	10	28	25	1.89
36145940--36145976	17	2.2	17	90	0	56	81	0	16	2	0.81
36151907--36151950	23	1.9	23	81	9	54	59	15	18	6	1.58
36159622--36159967	96	3.6	96	84	1	451	21	17	20	40	1.92
36159892--36160047	81	1.9	80	90	5	251	17	17	22	41	1.90
36159793--36160372	177	3.3	177	92	2	950	20	17	20	41	1.91
36160069--36160224	81	1.9	81	87	5	226	19	17	21	41	1.90
36160246--36160407	81	2.0	82	85	3	220	22	19	17	40	1.92
36160345--36160481	69	2.0	69	85	2	186	20	19	18	41	1.90
36160414--36160616	96	2.1	96	84	1	255	21	19	16	42	1.89
36162352--36162628	29	10.2	29	84	9	313	31	0	23	44	1.54
36162372--36162628	57	4.8	54	81	12	302	31	0	24	44	1.54
36162400--36162560	23	6.5	23	82	12	169	32	0	22	45	1.53
36162352--36162582	127	1.8	127	83	1	311	32	0	22	45	1.53
36162372--36162502	23	5.4	23	87	5	163	30	0	22	47	1.51
36164976--36165025	11	4.6	11	77	5	57	70	0	0	30	0.88
36164984--36165025	21	2.0	21	85	0	57	69	0	0	30	0.89
36164976--36165043	32	2.2	32	94	2	120	67	0	1	30	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36165077--36165127	22	2.3	21	87	9	75	35	0	33	31	1.58
36165102--36165209	30	3.9	30	80	18	151	38	0	33	27	1.57
36165080--36165230	52	2.9	52	97	0	284	38	0	32	29	1.58
36165132--36165179	22	2.2	22	96	0	87	39	0	35	25	1.56
36165184--36165230	22	2.1	22	96	0	85	40	0	34	25	1.56
36165362--36165456	42	2.3	40	80	10	104	16	32	29	21	1.95
36177515--36177615	41	2.5	41	77	1	105	30	19	20	28	1.97
36177422--36177714	156	1.9	156	89	0	460	30	20	20	29	1.97
36185969--36186010	14	3.2	13	83	12	50	19	14	9	57	1.64
36186035--36186104	23	3.0	22	78	15	61	30	12	10	47	1.75
36186056--36186119	25	2.5	26	84	5	85	29	14	7	48	1.71
36186058--36186107	12	4.1	12	82	5	64	30	16	8	46	1.75
36187681--36187726	23	2.0	23	86	0	65	30	34	10	23	1.89
36190820--36191300	114	4.2	114	91	0	739	23	21	27	28	1.99
36191582--36191754	86	2.0	85	98	1	337	45	5	11	36	1.64
36191989--36192033	14	3.2	14	90	0	63	20	0	44	35	1.51
36192000--36192034	7	5.0	7	96	0	61	17	0	54	28	1.43
36192000--36192050	21	2.4	21	83	0	57	21	0	49	29	1.50
36192785--36192910	22	5.3	24	80	10	127	38	21	25	15	1.92
36194681--36194735	21	2.6	21	73	21	53	49	1	5	43	1.36
36194729--36194771	9	4.7	9	81	16	52	58	0	6	34	1.25
36194737--36194780	19	2.3	19	88	7	63	63	2	6	27	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36194764--36194803	18	2.4	17	87	8	55	77	2	0	20	0.88
36194774--36194825	18	2.8	18	82	5	68	76	3	1	17	1.02
36196335--36196411	6	12.8	6	94	0	100	0	7	49	42	1.31
36196335--36196411	18	4.3	18	93	0	118	0	7	49	42	1.31
36196677--36196720	18	2.4	19	84	3	54	13	15	13	56	1.67
36196709--36196755	21	2.2	22	88	3	69	4	8	10	76	1.13
36196724--36196765	7	5.9	7	86	5	57	2	11	11	73	1.18
36197213--36197407	54	3.6	54	99	0	381	37	9	5	47	1.59
36197260--36197421	13	11.8	13	68	14	85	38	9	4	46	1.59
36197381--36197431	17	3.2	17	73	21	65	39	15	1	43	1.58
36197368--36197430	13	4.5	13	74	14	54	39	12	3	44	1.59
36197563--36197779	9	23.9	9	71	14	144	46	19	3	30	1.66
36197607--36197673	34	2.0	33	83	16	84	47	22	1	28	1.60
36197603--36197714	43	2.6	43	81	8	127	46	22	2	28	1.65
36201257--36201526	42	6.4	41	81	4	288	27	18	18	35	1.94
36201284--36201526	126	1.9	127	85	2	337	27	19	17	34	1.94
36206165--36206203	17	2.3	17	100	0	78	61	5	0	33	1.18
36208244--36208367	63	2.0	63	98	0	239	50	15	9	24	1.73
36215867--36216357	44	11.2	44	64	12	130	24	24	21	29	1.99
36215778--36216363	132	4.4	132	91	0	875	24	24	21	29	1.99
36223765--36223794	6	5.0	6	100	0	60	50	16	16	16	1.79
36223844--36223879	3	12.0	3	100	0	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36229808--36229888	27	3.0	28	89	5	114	30	20	28	19	1.97
36229955--36230024	19	3.7	19	82	3	97	37	8	0	54	1.31
36229960--36230030	37	1.9	37	97	0	133	40	8	0	50	1.33
36230151--36230236	27	3.2	27	81	4	95	20	25	22	31	1.98
36231110--36231157	22	2.2	22	84	0	60	12	16	6	64	1.46
36235015--36235056	7	6.1	7	97	2	77	28	57	0	14	1.38
36240977--36241087	42	2.6	42	86	0	150	18	37	22	20	1.94
36246478--36246520	21	2.0	21	86	8	61	44	20	6	27	1.77
36247200--36247241	9	4.7	9	88	8	59	30	0	0	69	0.89
36247366--36247401	14	2.7	13	87	8	54	50	0	0	50	1.00
36250592--36250640	21	2.3	21	92	0	80	44	16	24	14	1.84
36258191--36258219	13	2.2	13	100	0	58	37	0	13	48	1.43
36264773--36264801	1	29.0	1	100	0	58	100	0	0	0	0.00
36264665--36264893	119	1.9	119	100	0	458	37	11	27	22	1.89
36271858--36272346	266	1.8	266	86	0	710	43	23	4	28	1.73
36272836--36273027	21	9.2	21	76	3	120	42	16	23	17	1.88
36272836--36273028	42	4.6	42	77	7	173	43	16	23	17	1.88
36272836--36273027	63	3.1	63	76	5	149	42	16	23	17	1.88
36274987--36275031	15	2.7	17	80	19	51	46	8	0	44	1.34
36275254--36275287	18	1.9	17	94	5	59	41	0	2	55	1.15
36275633--36275863	2	120.5	2	66	17	71	47	1	0	49	1.17
36275647--36275863	23	9.3	23	79	14	173	47	1	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36275693--36275766	11	6.8	11	76	3	78	50	0	1	48	1.09
36275833--36275870	11	3.5	11	85	0	58	47	0	0	52	1.00
36279575--36279730	76	2.1	76	93	2	269	35	25	12	26	1.92
36279967--36280048	21	3.9	21	73	12	71	23	26	8	41	1.83
36280592--36280675	43	2.0	43	83	9	109	45	21	3	29	1.69
36281776--36281813	18	2.1	19	85	5	51	57	15	7	18	1.62
36284073--36284119	25	1.9	25	86	4	69	17	25	17	40	1.90
36284188--36284235	25	2.0	24	91	4	78	18	25	20	35	1.95
36286325--36286400	26	2.9	26	90	0	107	43	3	7	44	1.51
36288876--36289209	51	6.6	49	76	9	280	22	17	29	31	1.96
36288881--36289209	101	3.2	101	79	9	276	22	17	29	31	1.96
36288982--36289064	28	3.1	28	64	22	79	19	15	32	32	1.93
36288873--36289209	152	2.2	152	94	1	586	22	17	29	31	1.96
36292486--36292599	54	2.1	54	82	6	133	12	35	24	28	1.91
36297381--36297405	5	5.0	5	100	0	50	60	0	0	40	0.97
36304485--36304551	34	1.9	35	87	3	100	31	7	13	47	1.70
36304479--36304555	14	5.0	15	71	20	52	33	7	14	44	1.74
36321048--36321106	25	2.3	27	80	16	72	27	22	5	45	1.73
36322174--36322377	103	2.0	103	88	1	302	34	20	3	41	1.69
36327794--36328033	119	2.0	121	96	3	450	40	13	12	33	1.82
36328056--36328082	13	2.1	13	100	0	54	37	0	0	62	0.95
36329527--36329588	19	3.2	19	78	15	65	61	6	4	27	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36345917--36345953	9	4.1	9	92	0	65	45	13	10	29	1.77
36346243--36346286	23	1.9	23	95	0	79	36	22	0	40	1.54
36346273--36346312	20	2.0	21	90	5	64	20	25	0	55	1.44
36346835--36346860	5	5.2	5	100	0	52	19	19	19	42	1.90
36347574--36347624	25	2.0	25	100	0	102	27	23	11	37	1.90
36353233--36353263	14	2.1	15	94	5	55	35	0	0	64	0.94
36363745--36363775	5	6.2	5	100	0	62	41	19	19	19	1.90
36369182--36369262	29	2.8	29	98	0	153	23	11	16	49	1.77
36369381--36369416	16	2.1	16	90	10	54	55	0	0	44	0.99
36370230--36370265	16	2.1	16	90	10	54	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128