genome.fa.s12.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  82  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26868675--26868715	19	2.0	19	86	13	55	43	0	0	56	0.99
26871287--26871338	25	2.1	25	100	0	104	28	7	15	48	1.73
26875190--26875249	33	1.9	32	86	10	88	40	15	15	30	1.87
26880957--26881015	28	2.2	28	81	6	68	16	23	20	38	1.92
26887264--26887298	18	1.9	18	88	0	52	37	2	11	48	1.54
26889912--26889953	22	1.9	22	85	9	59	30	9	0	59	1.29
26891337--26891401	31	2.1	31	100	0	130	32	9	12	46	1.73
26894475--26894504	11	2.7	11	100	0	60	16	10	6	66	1.41
26905580--26905641	31	2.0	31	100	0	124	32	9	22	35	1.87
26912128--26912458	72	4.6	72	94	1	522	49	7	2	40	1.45
26912402--26912439	20	2.0	20	89	5	60	57	2	0	39	1.12
26913326--26913384	21	2.7	22	82	12	61	54	3	6	35	1.44
26915903--26915944	19	2.3	18	84	12	50	47	4	4	42	1.45
26920427--26920468	21	2.0	21	85	0	57	64	4	4	26	1.33
26921324--26921358	18	1.9	18	88	0	52	0	17	17	65	1.27
26922127--26922909	50	15.7	50	66	8	304	24	17	24	33	1.96
26922065--26922943	100	8.8	100	90	0	1355	24	18	24	33	1.97
26924181--26924227	17	2.6	17	81	15	51	8	12	0	78	0.95
26929904--26929940	3	12.3	3	88	0	56	62	2	2	32	1.23
26930951--26931003	27	2.0	27	85	7	74	9	5	39	45	1.60
26935850--26935906	30	1.9	30	100	0	114	52	17	7	22	1.68
26941472--26941531	31	1.9	31	86	0	84	48	10	15	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26947762--26947803	22	1.9	22	85	9	59	54	2	0	42	1.13
26947781--26947819	19	2.1	19	85	9	53	58	5	0	35	1.20
26948084--26948111	12	2.3	12	100	0	56	60	0	7	32	1.24
26948570--26948668	48	2.0	49	88	1	146	38	11	6	44	1.65
26949337--26949396	16	3.8	16	78	10	61	50	1	1	46	1.21
26951259--26951394	39	3.5	39	85	2	184	44	20	5	29	1.73
26953273--26953349	39	2.0	39	82	5	93	29	7	12	49	1.69
26957663--26957703	22	1.9	21	90	5	64	34	19	7	39	1.80
26958596--26958646	22	2.4	22	86	3	68	64	3	0	31	1.11
26960917--26960964	9	5.2	9	77	5	51	25	41	2	31	1.67
26969196--26969292	49	2.0	49	85	0	131	22	16	29	30	1.96
26972856--26972899	17	2.5	18	81	3	54	70	11	11	6	1.33
26992340--26992387	25	1.9	25	86	0	69	35	27	12	25	1.92
26993327--26993387	30	2.1	29	85	11	81	57	14	11	16	1.65
26994394--26994606	39	5.5	39	82	3	225	27	13	24	34	1.93
27002741--27003109	184	2.0	184	90	1	578	31	13	17	37	1.88
27004004--27004052	23	2.1	25	85	11	68	30	2	20	46	1.62
27008257--27008305	18	2.6	18	84	15	55	14	2	6	77	1.05
27018597--27018651	25	2.2	25	93	0	92	21	29	29	20	1.98
27020767--27020826	30	2.0	31	86	3	86	20	40	0	40	1.52
27037095--27037150	13	4.5	13	75	20	66	46	12	0	41	1.42
27038798--27038823	13	2.0	13	100	0	52	38	0	7	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27040613--27040726	23	5.0	23	81	0	129	43	21	20	14	1.87
27040613--27040726	46	2.5	46	85	0	165	43	21	20	14	1.87
27048633--27048758	50	2.5	50	85	0	162	19	33	23	23	1.97
27048957--27049348	50	7.8	50	87	0	498	21	29	21	27	1.98
27048396--27049121	363	2.0	363	96	0	1335	25	24	18	31	1.98
27048978--27049348	150	2.5	150	87	1	548	21	29	21	27	1.99
27052600--27052638	18	2.2	18	100	0	78	28	5	38	28	1.78
27052991--27053022	3	10.7	3	93	0	55	68	0	31	0	0.90
27053981--27054140	79	2.0	80	86	6	227	25	15	16	43	1.87
27062505--27062615	41	2.7	41	87	0	159	18	30	16	34	1.93
27073851--27073900	25	2.0	25	100	0	100	20	20	44	16	1.87
27089821--27090661	418	2.0	421	93	2	1456	36	14	12	36	1.85
27099475--27099536	22	2.8	23	85	11	76	30	3	6	59	1.38
27102753--27102876	41	3.0	41	78	11	128	21	21	29	27	1.99
27112035--27112201	78	2.1	79	97	1	318	30	22	9	37	1.86
27116088--27116187	41	2.5	41	86	1	130	40	13	25	22	1.89
27117398--27117430	2	16.5	2	93	0	57	48	0	3	48	1.17
27124077--27124113	18	2.0	19	89	5	58	27	0	18	54	1.44
27124512--27124562	17	2.9	17	74	11	50	62	3	0	33	1.13
27129965--27130021	28	2.1	27	83	3	69	49	29	3	17	1.63
27130091--27130130	13	2.9	14	85	7	55	50	30	0	20	1.49
27130392--27130426	9	4.0	9	85	7	54	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27131498--27131524	14	1.9	14	100	0	54	51	0	0	48	1.00
27135859--27135887	7	4.1	7	100	0	58	27	0	0	72	0.85
27140378--27140557	51	3.5	51	76	5	168	32	18	24	24	1.97
27140393--27140534	53	2.7	53	81	3	164	33	21	21	22	1.97
27140338--27140535	103	1.9	103	82	6	249	33	19	22	24	1.97
27144080--27144120	17	2.6	17	88	11	61	48	0	0	51	1.00
27144339--27144370	17	2.0	17	88	11	50	62	15	21	0	1.32
27146870--27147106	123	1.9	123	100	0	474	25	21	21	31	1.98
27148624--27148717	45	2.1	45	91	0	152	32	25	17	24	1.96
27148712--27148896	51	3.6	51	77	2	176	29	25	17	27	1.98
27152609--27152637	11	2.7	11	94	5	51	89	0	10	0	0.48
27154670--27154707	19	2.0	19	89	0	58	50	7	5	36	1.54
27154803--27154889	22	3.7	22	92	7	129	54	13	0	32	1.40
27154937--27155008	27	2.7	27	93	0	117	34	0	12	52	1.39
27181533--27181628	50	1.9	50	82	4	122	38	3	16	41	1.64
27182430--27182605	82	2.2	80	86	8	234	39	17	8	34	1.80
27182888--27182927	20	1.9	22	90	10	66	30	0	7	62	1.23
27183375--27183452	14	5.1	14	70	22	50	33	7	12	46	1.71
27183383--27183449	34	1.9	35	90	3	109	31	7	11	49	1.67
27189859--27189901	18	2.4	18	88	7	61	46	0	0	53	1.00
27192394--27192562	89	1.9	88	86	3	241	37	19	8	33	1.83
27192619--27192695	9	8.8	8	78	13	73	27	0	5	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27192618--27192690	28	2.7	28	87	8	98	30	0	5	64	1.16
27192712--27192894	94	1.9	95	80	5	210	40	6	16	36	1.74
27195650--27195691	21	2.0	21	86	13	59	71	0	28	0	0.86
27197820--27197902	21	4.0	21	69	0	58	42	16	24	16	1.89
27197824--27197957	42	3.2	42	79	2	135	45	14	22	17	1.85
27213056--27213097	21	2.0	21	86	13	59	71	0	28	0	0.86
27215226--27215308	21	4.0	21	69	0	58	42	16	24	16	1.89
27215230--27215363	42	3.2	42	79	2	135	45	14	22	17	1.85
27220812--27220877	9	7.0	9	70	10	51	30	1	4	63	1.23
27220810--27220898	39	2.3	39	86	3	117	31	1	4	62	1.22
27220843--27220983	20	6.6	20	73	16	106	34	0	5	60	1.20
27220858--27221020	68	2.4	68	94	1	281	34	0	6	58	1.27
27227888--27227938	25	2.1	24	85	10	68	19	0	7	72	1.08
27228288--27228314	6	4.5	6	100	0	54	70	0	14	14	1.17
27232056--27232092	17	2.1	18	90	5	58	43	0	0	56	0.99
27232124--27232162	19	2.1	19	90	9	62	48	0	0	51	1.00
27232560--27232598	19	2.1	19	90	9	62	48	0	0	51	1.00
27232100--27232973	436	2.0	437	99	0	1741	33	13	9	42	1.77
27240334--27240598	132	2.0	133	97	2	507	43	5	8	43	1.58
27242082--27242112	15	2.1	15	100	0	62	29	32	6	32	1.83
27244770--27244841	37	1.9	37	94	0	126	50	18	11	20	1.77
27245287--27245963	338	2.0	338	94	1	1189	30	16	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27272437--27272489	19	2.9	18	80	5	70	26	15	15	43	1.85
27293577--27293623	25	1.9	24	91	4	76	57	0	4	38	1.18
27295525--27295751	116	2.0	116	100	0	454	33	1	30	34	1.68
27302172--27302198	3	9.0	3	100	0	54	33	0	0	66	0.92
27305357--27305391	17	2.1	17	88	0	52	45	0	0	54	0.99
27305339--27305412	5	15.2	5	76	10	55	37	0	4	58	1.17
27305456--27305526	5	13.4	5	77	16	72	38	0	1	60	1.06
27305456--27305526	8	8.9	8	77	14	67	38	0	1	60	1.06
27305733--27305776	23	1.9	23	86	9	63	75	0	25	0	0.81
27315707--27315888	66	2.8	64	73	10	163	42	13	4	39	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128