genome.fa.s12.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  35  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10756390--10756437	20	2.4	20	89	0	69	66	2	0	31	1.03
10756403--10756446	20	2.2	20	91	0	70	68	2	2	27	1.14
10762388--10762412	13	1.9	13	100	0	50	0	20	0	80	0.72
10763283--10763343	24	2.5	24	81	5	70	31	4	8	55	1.50
10765642--10765687	17	2.7	18	77	12	53	63	4	2	30	1.26
10772609--10772669	22	2.8	22	79	0	68	6	8	18	67	1.38
10775592--10775646	27	2.1	26	89	3	83	52	1	12	32	1.50
10775869--10775896	2	14.0	2	100	0	56	50	0	0	50	1.00
10778840--10778874	18	1.9	18	88	0	52	22	2	14	60	1.48
10784783--10784824	16	2.5	17	84	3	59	33	2	2	61	1.21
10784846--10784897	27	1.9	25	85	14	68	61	3	0	34	1.14
10786850--10786879	14	2.2	13	94	5	51	46	0	3	50	1.18
10786818--10786879	33	1.9	32	86	3	88	45	1	4	48	1.33
10793647--10793682	14	2.5	15	90	4	56	52	2	0	44	1.15
10794927--10795005	40	2.0	40	87	0	113	20	25	31	22	1.98
10795153--10795186	11	3.1	11	91	0	59	17	32	2	47	1.63
10795149--10795202	22	2.5	22	83	16	69	22	29	1	46	1.62
10795153--10795250	22	4.1	22	68	16	61	23	26	1	48	1.57
10797076--10797118	18	2.4	18	88	0	59	18	27	9	44	1.80
10797627--10797657	12	2.6	12	94	0	53	41	0	6	51	1.27
10797684--10797882	64	3.1	65	86	6	282	45	29	0	25	1.58
10797692--10797884	43	4.5	43	90	3	302	45	29	0	24	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10797684--10797882	21	9.4	22	86	6	277	45	29	0	25	1.58
10797860--10797945	27	3.2	27	75	12	88	44	32	1	22	1.60
10797928--10797953	6	4.3	6	100	0	52	38	46	0	15	1.46
10797951--10798162	111	1.9	111	96	0	388	43	8	8	40	1.65
10800984--10801284	126	2.4	125	91	0	494	27	19	18	33	1.96
10801362--10801440	40	2.0	40	84	0	104	21	27	24	26	1.99
10813631--10813672	18	2.3	18	91	0	66	21	28	7	42	1.79
10815034--10815070	14	2.6	14	86	0	56	56	5	5	32	1.45
10818215--10818304	25	3.6	25	86	5	121	25	20	3	51	1.63
10818373--10819046	126	5.4	126	87	1	940	28	16	16	38	1.91
10818400--10819046	251	2.6	251	88	1	929	28	16	16	38	1.90
10819136--10819268	28	4.6	28	76	12	117	45	17	0	37	1.49
10819178--10819245	33	2.1	33	88	5	102	44	10	0	45	1.38
10820073--10820127	27	2.0	27	85	3	74	49	5	5	40	1.49
10836290--10836346	23	2.7	22	84	12	75	52	33	1	12	1.49
10836379--10836416	19	2.1	19	85	14	53	63	10	2	23	1.39
10836407--10836489	41	2.0	42	85	2	114	48	25	1	25	1.59
10836397--10836487	22	4.2	22	72	16	73	48	23	2	26	1.62
10837409--10837487	39	2.1	38	83	7	97	51	2	5	40	1.37
10841837--10841890	27	2.0	27	100	0	108	48	14	14	22	1.81
10844805--10844999	41	4.8	41	83	2	203	35	25	19	19	1.95
10844846--10844999	82	1.9	82	87	0	227	33	25	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10845427--10845478	28	1.9	26	88	7	77	44	7	0	48	1.31
10851108--10851150	21	2.0	21	86	0	59	60	4	0	34	1.17
10851128--10851159	12	2.4	14	90	10	50	56	0	0	43	0.99
10851727--10851798	35	2.1	35	100	0	144	34	8	13	43	1.75
10857827--10858875	67	15.7	67	89	1	1503	36	16	23	23	1.95
10872722--10873037	67	4.7	67	80	2	323	35	14	24	25	1.93
10872725--10873037	133	2.3	134	80	2	351	35	14	24	25	1.93
10879995--10880844	67	12.7	67	79	2	823	35	14	23	26	1.93
10879999--10880844	200	4.2	201	79	2	831	35	14	23	26	1.93
10879995--10880844	267	3.2	267	99	0	1666	35	14	23	26	1.93
10891058--10891090	14	2.4	14	90	5	50	24	6	3	66	1.28
10903018--10903059	21	2.0	21	81	9	50	42	4	2	50	1.36
10908555--10908755	43	4.7	43	81	13	193	23	18	25	32	1.97
10919997--10920123	53	2.4	53	80	6	141	19	33	22	25	1.97
10922273--10922310	15	2.5	15	87	12	51	47	2	0	50	1.15
10933032--10933136	52	2.0	52	96	0	192	24	35	20	20	1.96
10934515--10934974	134	3.4	133	80	4	469	36	11	16	35	1.85
10938095--10938214	42	2.8	44	79	9	131	35	25	15	23	1.95
10938091--10938214	44	2.9	40	76	13	115	34	25	16	23	1.95
10951559--10951891	43	7.8	43	76	4	273	43	21	13	21	1.87
10951595--10951899	129	2.4	129	86	1	423	43	20	13	21	1.86
10952428--10952540	55	2.1	55	94	0	199	41	19	7	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10958851--10959186	43	7.9	43	89	2	464	28	28	18	24	1.98
10958829--10959203	129	2.9	128	88	2	513	29	27	17	25	1.98
10960560--10960791	115	2.0	116	95	3	423	42	15	10	31	1.81
10968676--10968703	2	14.0	2	100	0	56	50	0	0	50	1.00
10970270--10970323	19	2.8	19	91	0	90	38	16	7	37	1.77
10974707--10974759	2	26.5	2	90	7	81	49	3	0	47	1.19
10975106--10975150	22	2.0	23	83	8	58	31	4	8	55	1.51
10977033--10977272	120	2.0	122	97	1	457	47	6	15	29	1.71
10978361--10978400	18	2.2	18	86	0	53	70	0	5	25	1.08
11001791--11001903	56	2.0	56	89	0	172	31	5	18	44	1.72
11001859--11001924	33	2.0	33	85	5	89	25	10	18	45	1.81
11012649--11012673	13	1.9	13	100	0	50	32	0	0	68	0.90
11015519--11015554	15	2.4	15	90	0	54	52	0	0	47	1.00
11016154--11016199	21	2.2	21	84	7	58	65	6	0	28	1.17
11016231--11016293	20	3.2	19	74	21	58	69	3	1	25	1.12
11023617--11023658	19	2.3	19	88	12	61	69	4	21	4	1.26
11023783--11023807	10	2.5	10	100	0	50	60	0	16	24	1.36
11025599--11025623	8	3.1	8	100	0	50	64	12	0	24	1.27
11028357--11028381	13	1.9	13	100	0	50	48	12	0	40	1.40
11030523--11030566	23	1.9	23	85	0	61	38	2	2	56	1.24
11031863--11031975	41	2.8	41	86	8	133	29	26	20	23	1.99
11031903--11031987	41	2.0	42	93	2	145	29	24	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11036187--11036218	6	5.3	6	100	0	64	84	0	0	15	0.63
11037153--11037192	6	6.5	6	82	5	53	75	0	0	25	0.81
11037153--11037192	19	2.2	18	86	4	53	75	0	0	25	0.81
11037210--11037267	10	5.9	10	76	9	57	62	3	3	31	1.29
11037384--11037501	19	6.3	19	69	16	77	33	2	1	62	1.18
11037377--11037501	9	13.4	9	72	15	85	32	2	2	63	1.20
11037365--11037497	47	2.8	48	76	11	123	33	3	2	61	1.23
11037609--11037783	93	1.9	90	85	3	242	33	9	20	36	1.85
11047191--11047237	15	3.1	16	81	12	71	36	4	38	21	1.73
11052030--11052127	42	2.3	42	80	3	108	42	15	18	23	1.88
11052405--11052440	17	2.1	17	100	0	72	27	41	5	25	1.77
11055505--11055547	14	2.9	15	82	6	61	67	2	11	18	1.32
11058289--11058355	34	2.0	34	93	0	116	35	13	11	38	1.82
11060431--11060586	71	2.2	71	90	1	251	12	22	16	48	1.80
11061301--11061338	16	2.3	16	86	13	51	57	10	2	28	1.45
11065658--11065689	16	2.0	16	100	0	64	50	6	0	43	1.27
11068062--11068116	21	2.6	21	91	0	92	21	9	40	29	1.84
11068379--11068430	22	2.3	22	77	9	52	50	5	1	42	1.37
11083680--11083704	13	1.9	13	100	0	50	40	24	20	16	1.91
11086416--11086462	21	2.1	22	84	7	60	55	10	12	21	1.67
11086578--11086616	11	3.4	12	86	10	55	64	30	5	0	1.15
11086578--11086624	22	2.1	22	84	7	60	63	29	4	2	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11088100--11088165	33	2.0	32	82	8	80	63	3	3	30	1.24
11090767--11090890	44	2.8	45	85	1	160	38	13	24	23	1.91
11090769--11090890	45	2.8	44	84	1	154	38	13	24	22	1.91
11092131--11092336	102	2.0	102	97	0	385	29	13	22	34	1.92
11095681--11095766	38	2.2	39	93	4	156	26	19	4	48	1.68
11095692--11095810	38	2.9	39	85	8	123	31	20	6	42	1.78
11106435--11106540	41	2.6	41	77	7	115	29	31	22	16	1.96
11112733--11112817	26	3.3	26	72	18	86	25	12	23	37	1.91
11112702--11112815	52	2.2	53	87	3	158	23	11	24	40	1.88
11129758--11129805	26	2.0	22	84	15	60	37	6	14	41	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128