genome.fa.s12.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  54  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17153024--17153114	33	2.8	33	83	9	107	9	25	5	59	1.51
17153099--17153145	19	2.6	17	78	21	51	8	29	4	57	1.48
17154227--17154389	54	3.0	54	84	1	220	32	15	19	32	1.93
17158404--17158471	30	2.3	29	87	7	102	47	0	13	39	1.43
17158598--17159002	127	3.2	127	93	2	647	41	13	15	29	1.85
17159170--17159237	30	2.3	29	87	7	102	47	0	13	39	1.43
17161329--17161605	125	2.2	126	88	1	403	38	14	16	30	1.89
17161497--17161705	97	2.1	97	82	5	251	38	15	16	28	1.90
17161378--17161815	222	2.0	223	86	2	621	38	15	17	27	1.91
17163212--17163255	18	2.4	18	80	0	52	47	9	22	20	1.78
17164952--17164992	21	2.0	21	85	9	57	39	2	26	31	1.70
17165541--17165579	21	1.9	20	84	5	51	15	17	5	61	1.51
17166884--17166925	22	1.9	22	85	0	57	66	4	0	28	1.12
17172489--17172538	20	2.6	20	87	6	68	38	0	14	48	1.44
17193286--17193383	45	2.2	45	98	0	187	40	11	28	19	1.86
17199665--17199770	39	2.7	39	85	5	142	35	19	20	23	1.96
17199665--17199800	39	3.4	40	82	4	123	36	19	20	23	1.95
17199838--17200112	41	6.7	41	86	2	365	25	21	24	28	1.99
17200298--17200330	14	2.3	15	94	5	59	30	0	33	36	1.58
17200470--17200518	7	6.9	7	79	11	55	14	0	53	32	1.41
17200468--17200518	21	2.4	22	83	6	68	13	0	52	33	1.41
17200468--17200521	14	3.8	14	90	2	81	14	0	50	35	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17204977--17205036	18	3.4	18	64	13	52	43	6	10	40	1.64
17205200--17205230	16	1.9	16	93	0	53	45	0	0	54	0.99
17205245--17205442	43	4.6	43	87	2	299	20	17	32	29	1.95
17205661--17205953	139	2.1	140	88	0	435	24	21	22	31	1.99
17209259--17209290	6	5.3	6	100	0	64	18	0	0	81	0.70
17212720--17212874	21	7.3	21	68	5	98	16	24	17	41	1.90
17212677--17212872	42	4.6	42	80	7	164	16	23	17	41	1.89
17212673--17212870	85	2.3	84	80	2	236	16	23	17	42	1.88
17219949--17220518	43	13.3	42	84	4	753	18	16	31	32	1.94
17219946--17220520	86	6.7	86	99	0	1125	18	16	31	32	1.94
17220737--17221029	139	2.1	140	88	0	435	24	21	22	31	1.99
17224335--17224366	6	5.3	6	100	0	64	18	0	0	81	0.70
17227868--17227925	26	2.2	27	84	6	75	17	18	22	41	1.90
17227918--17227993	25	3.1	25	69	14	68	22	25	18	34	1.96
17236904--17236952	24	2.0	24	100	0	98	40	4	26	28	1.74
17245976--17246026	18	2.9	17	91	5	77	39	5	11	43	1.66
17246591--17246626	18	1.9	18	88	5	54	52	2	13	30	1.55
17248174--17248242	20	3.5	20	75	9	61	34	10	20	34	1.86
17250468--17250501	17	1.9	18	88	5	52	61	8	0	29	1.26
17257662--17257740	40	2.0	40	94	0	140	35	21	13	29	1.92
17266599--17266629	1	31.0	1	93	0	53	0	96	0	3	0.21
17271663--17271698	15	2.2	17	90	9	58	63	0	2	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17271663--17271701	12	3.4	11	80	13	51	64	0	2	33	1.08
17271657--17271707	21	2.4	21	78	18	61	64	0	5	29	1.17
17273140--17273636	263	1.9	263	93	0	852	30	24	16	27	1.97
17273135--17273637	132	3.8	132	89	1	787	30	24	16	28	1.97
17273696--17273849	50	3.1	50	66	9	127	26	18	20	34	1.96
17275562--17275602	7	6.0	7	83	16	59	14	14	0	70	1.16
17275562--17275601	13	3.0	13	92	3	62	15	15	0	70	1.18
17275562--17275602	20	2.0	21	90	4	66	14	14	0	70	1.16
17276553--17276592	19	2.1	19	86	9	55	70	7	10	12	1.35
17278503--17278528	13	2.0	13	100	0	52	46	15	7	30	1.74
17280800--17280838	3	13.0	3	84	10	53	64	0	2	33	1.08
17280790--17280844	24	2.4	24	80	17	71	65	0	5	29	1.15
17281559--17281657	9	11.6	8	67	22	51	62	1	2	34	1.13
17285165--17285200	18	2.0	18	88	0	54	36	36	8	19	1.82
17289738--17289877	10	14.0	10	68	15	76	37	1	5	55	1.30
17289732--17289877	21	7.4	19	70	13	91	36	1	4	56	1.29
17289816--17289878	28	2.2	28	83	11	74	34	0	7	57	1.28
17289723--17289948	10	23.4	9	67	21	63	34	1	4	58	1.30
17289741--17289891	19	7.6	19	70	17	85	37	1	5	54	1.34
17290094--17290152	16	3.8	16	82	6	68	45	1	20	32	1.61
17290211--17290263	16	3.3	16	91	0	88	37	3	33	24	1.74
17290085--17290301	116	1.9	116	82	1	274	35	6	25	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17290245--17290337	44	2.1	46	93	4	163	27	4	31	36	1.76
17290245--17290342	46	2.3	44	86	11	134	28	4	32	34	1.76
17293478--17293503	12	2.2	12	100	0	52	30	23	38	7	1.83
17295892--17295920	1	29.0	1	100	0	58	100	0	0	0	0.00
17295897--17296338	220	2.0	220	100	0	884	45	18	11	24	1.83
17300235--17300276	22	1.9	22	85	0	57	9	16	28	45	1.79
17300349--17300479	43	3.0	41	80	10	138	27	26	22	23	1.99
17303607--17303636	15	2.0	15	93	0	51	43	10	0	46	1.37
17305069--17305238	85	2.0	85	97	0	322	34	10	17	38	1.84
17305282--17305769	149	3.3	149	92	1	836	30	16	16	36	1.91
17305735--17306081	94	3.4	99	79	12	330	27	13	12	46	1.79
17305882--17306081	110	1.9	103	84	10	267	27	13	12	47	1.78
17306968--17307115	71	2.1	72	87	1	208	27	26	17	28	1.98
17307017--17307680	114	5.9	114	88	1	942	26	26	20	26	1.99
17307930--17307976	22	2.0	24	84	8	62	46	4	0	48	1.21
17307938--17307974	16	2.2	17	90	9	58	51	0	0	48	1.00
17316105--17316160	27	2.1	27	100	0	112	26	17	17	37	1.93
17320947--17320992	22	2.1	22	84	8	58	39	2	0	58	1.10
17334986--17335010	13	1.9	13	100	0	50	60	0	0	40	0.97
17334739--17335220	238	2.0	239	99	0	957	30	18	17	33	1.94
17338440--17338492	22	2.4	22	96	0	97	15	28	15	41	1.87
17338440--17338501	22	2.8	22	90	0	79	17	25	16	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17349415--17349487	26	2.9	24	82	11	83	35	21	26	16	1.94
17357393--17357437	21	2.1	22	84	12	58	20	8	15	55	1.66
17357642--17357770	40	3.2	39	83	4	159	20	30	17	32	1.95
17357644--17357709	20	3.3	20	68	8	62	16	31	16	34	1.92
17359466--17359730	131	2.0	131	98	1	514	43	18	13	25	1.86
17362140--17362174	17	2.0	18	88	5	54	54	0	2	42	1.15
17366907--17366968	25	2.5	26	82	7	76	30	14	30	24	1.95
17373091--17373126	19	2.0	19	89	10	58	33	5	16	44	1.71
17374634--17374688	10	5.6	10	75	12	51	60	1	3	34	1.25
17374624--17374738	29	4.0	28	75	15	92	57	1	6	33	1.36
17375034--17375081	20	2.5	19	83	9	62	56	0	4	39	1.19
17376889--17376951	32	2.0	32	87	0	90	42	6	6	44	1.55
17377072--17377117	16	3.1	15	81	9	58	47	0	0	52	1.00
17377887--17377933	16	2.9	16	96	0	85	44	0	29	25	1.54
17381419--17381469	24	2.1	24	85	7	68	54	0	7	37	1.29
17389497--17389521	11	2.3	11	100	0	50	8	20	8	64	1.46
17391995--17392035	3	13.7	3	100	0	82	65	0	34	0	0.93
17412432--17412471	2	19.5	2	94	5	71	47	2	0	50	1.14
17418431--17418465	3	11.7	3	100	0	70	68	0	0	31	0.90
17428141--17428180	17	2.2	17	86	8	53	30	5	12	52	1.60
17430557--17430942	193	2.0	193	93	0	664	32	16	24	26	1.96
17432826--17432876	13	3.8	13	75	14	50	33	5	21	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17442112--17442163	18	2.9	18	91	0	86	40	7	13	38	1.73
17452317--17452384	17	3.8	17	71	16	57	47	1	7	44	1.40
17452202--17452444	116	2.1	116	92	2	407	45	6	9	38	1.63
17452652--17452691	18	2.2	18	95	0	71	40	7	30	22	1.81
17462489--17462539	26	2.0	26	92	7	86	35	15	7	41	1.76
17463780--17463837	27	2.1	27	83	0	71	37	6	20	34	1.80
17469091--17469115	12	2.1	12	100	0	50	52	0	0	48	1.00
17471933--17471969	20	2.0	19	85	15	51	56	0	0	43	0.99
17472789--17473121	114	2.9	113	79	4	328	33	16	21	28	1.95
17473817--17473854	15	2.7	14	84	11	51	23	0	42	34	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128